Wall clock time and date at job start Tue Mar 31 2020 14:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47119 * 2 1 4 4 N 1.30166 * 126.80129 * 270.02260 * 3 2 1 5 5 O 1.20927 * 111.60287 * 179.97438 * 4 3 2 6 6 C 1.34035 * 111.56693 * 359.76134 * 5 4 3 7 7 C 1.50703 * 126.77555 * 180.28294 * 6 5 4 8 8 C 1.52995 * 109.47633 * 270.11309 * 7 6 5 9 9 C 1.35444 * 106.44772 * 0.38304 * 6 5 4 10 10 C 1.50699 * 128.01084 * 179.91023 * 9 6 5 11 11 N 1.46498 * 109.47253 * 269.68114 * 10 9 6 12 12 C 1.34783 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00186 * 359.97438 * 12 11 10 14 14 C 1.47642 * 119.99765 * 179.71985 * 12 11 10 15 15 C 1.40015 * 119.89395 * 0.02562 * 14 12 11 16 16 C 1.36321 * 120.10544 * 179.71765 * 15 14 12 17 17 C 1.40895 * 119.88932 * 0.55022 * 16 15 14 18 18 C 1.41108 * 120.10152 * 179.69677 * 17 16 15 19 19 H 1.07992 * 119.99872 * 204.66399 * 18 17 16 20 20 C 1.40225 * 120.00051 * 24.66454 * 18 17 16 21 21 N 1.30654 * 119.99982 * 17.86632 * 20 18 17 22 22 Si 1.86795 * 120.00136 * 197.86918 * 20 18 17 23 23 H 1.48493 * 109.47526 * 59.99350 * 22 20 18 24 24 H 1.48496 * 109.47534 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46856 * 299.99762 * 22 20 18 26 26 C 1.40889 * 119.79304 * 359.72558 * 17 16 15 27 27 C 1.36323 * 119.89189 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47752 * 300.00477 * 1 2 3 30 30 H 1.09008 * 109.47079 * 60.00317 * 1 2 3 31 31 H 1.09001 * 109.47450 * 239.99978 * 2 1 3 32 32 H 1.09008 * 109.47079 * 119.99683 * 2 1 3 33 33 H 1.09001 * 109.47356 * 30.11912 * 7 6 5 34 34 H 1.09006 * 109.46745 * 150.11216 * 7 6 5 35 35 H 1.09001 * 109.47437 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47241 * 300.00673 * 8 7 6 37 37 H 1.09006 * 109.47131 * 60.00143 * 8 7 6 38 38 H 1.08996 * 109.47570 * 149.67173 * 10 9 6 39 39 H 1.09008 * 109.46759 * 29.68006 * 10 9 6 40 40 H 0.96998 * 119.99837 * 359.97438 * 11 10 9 41 41 H 1.07996 * 119.94843 * 359.97438 * 15 14 12 42 42 H 1.07994 * 120.05729 * 180.27717 * 16 15 14 43 43 H 0.97000 * 119.99535 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.04925 * 179.97438 * 26 17 16 45 45 H 1.07994 * 119.94393 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1561 -1.0423 5 8 2.6804 3.2565 -0.7252 6 6 2.7252 3.3984 0.6068 7 6 3.1509 4.6264 1.3696 8 6 4.6574 4.5683 1.6301 9 6 2.3145 2.2194 1.1321 10 6 2.1824 1.8472 2.5864 11 7 3.4418 1.2661 3.0580 12 6 3.5580 0.8571 4.3371 13 8 2.6178 0.9709 5.0995 14 6 4.8252 0.2658 4.8107 15 6 5.9049 0.1314 3.9295 16 6 7.0788 -0.4087 4.3638 17 6 7.2007 -0.8426 5.6987 18 6 8.4117 -1.4082 6.1512 19 1 8.4104 -2.0840 6.9936 20 6 9.6167 -1.0928 5.5072 21 7 9.6901 -0.0391 4.7382 22 14 11.1170 -2.1792 5.7486 23 1 10.8113 -3.5559 5.2836 24 1 12.2547 -1.6330 4.9661 25 1 11.4778 -2.2119 7.1888 26 6 6.1095 -0.7106 6.5801 27 6 4.9416 -0.1636 6.1382 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.9173 5.5163 0.7851 34 1 2.6190 4.6662 2.3202 35 1 4.9652 5.4564 2.1822 36 1 4.8910 3.6784 2.2146 37 1 5.1893 4.5286 0.6795 38 1 1.3798 1.1191 2.7037 39 1 1.9525 2.7386 3.1701 40 1 4.1920 1.1756 2.4498 41 1 5.8090 0.4599 2.9052 42 1 7.9126 -0.5079 3.6846 43 1 10.5235 0.1788 4.2924 44 1 6.1982 -1.0422 7.6040 45 1 4.1045 -0.0624 6.8130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270378142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:16 Heat of formation + Delta-G solvation = 2.089998 kcal Electronic energy + Delta-G solvation = -27292.006566 eV Core-core repulsion = 23468.836902 eV Total energy + Delta-G solvation = -3823.169664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.04254 -40.76615 -38.94772 -37.32147 -36.02459 -35.65920 -34.93438 -32.59792 -32.02231 -31.30907 -31.17135 -28.60008 -27.06532 -25.60291 -24.58055 -23.69583 -22.86078 -22.41067 -21.27428 -20.77577 -19.35772 -18.77624 -18.64794 -17.80067 -17.29322 -16.78076 -16.40888 -15.88465 -15.73151 -15.52772 -15.32868 -15.10994 -15.03073 -14.61091 -14.43494 -14.03519 -13.89365 -13.83559 -13.71446 -13.61816 -13.35655 -13.16787 -12.85283 -12.74957 -12.63380 -12.50929 -12.36322 -12.34716 -12.10610 -11.79236 -11.71477 -11.36514 -11.15773 -11.09340 -10.74973 -10.26193 -10.09659 -9.56280 -9.39462 -8.78914 -6.47514 0.34684 0.45702 1.00638 1.16424 1.39111 1.44586 1.52040 2.02880 2.12904 2.18440 2.54032 2.79637 3.06784 3.36089 3.65677 3.71182 3.82217 4.07844 4.19562 4.26286 4.27550 4.28566 4.30886 4.41080 4.43463 4.46768 4.62576 4.72199 4.80843 4.93632 4.94188 4.97073 4.99956 5.03542 5.03755 5.10205 5.16994 5.25258 5.30755 5.33550 5.48746 5.59856 5.83217 5.95222 6.00453 6.23969 6.54875 6.66662 6.78157 6.89840 7.20570 7.42535 8.15888 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002852 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.005201 B = 9815.478813 C =10234.287739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.037 3.963 4 N -0.389 5.389 5 O 0.090 5.910 6 C 0.007 3.993 7 C -0.043 4.043 8 C -0.151 4.151 9 C -0.228 4.228 10 C 0.210 3.790 11 N -0.720 5.720 12 C 0.578 3.422 13 O -0.599 6.599 14 C -0.291 4.291 15 C -0.053 4.053 16 C -0.198 4.198 17 C 0.103 3.897 18 C -0.475 4.475 19 H 0.085 0.915 20 C 0.039 3.961 21 N -0.797 5.797 22 Si 0.985 3.015 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.258 1.258 26 C -0.253 4.253 27 C -0.030 4.030 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.403 0.597 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.296 0.704 44 H 0.104 0.896 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 6.022 -10.005 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.123 4.123 4 N -0.096 5.096 5 O 0.029 5.971 6 C -0.057 4.057 7 C -0.081 4.081 8 C -0.209 4.209 9 C -0.233 4.233 10 C 0.087 3.913 11 N -0.372 5.372 12 C 0.371 3.629 13 O -0.484 6.484 14 C -0.295 4.295 15 C -0.072 4.072 16 C -0.217 4.217 17 C 0.100 3.900 18 C -0.502 4.502 19 H 0.103 0.897 20 C -0.180 4.180 21 N -0.421 5.421 22 Si 0.805 3.195 23 H -0.183 1.183 24 H -0.189 1.189 25 H -0.183 1.183 26 C -0.272 4.272 27 C -0.049 4.049 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.104 6.101 -10.983 15.516 hybrid contribution 1.013 -0.521 0.634 1.303 sum -8.091 5.580 -10.350 14.273 Atomic orbital electron populations 1.21682 0.92686 1.03394 1.02042 1.20078 0.97480 0.87159 1.04238 1.23780 1.00593 0.99753 0.88159 1.73844 1.18050 0.93255 1.24454 1.84799 1.62617 1.26653 1.23032 1.24880 0.98431 0.99123 0.83288 1.20365 0.97616 0.91163 0.98979 1.21790 0.93548 1.03154 1.02386 1.20873 1.11237 0.94528 0.96647 1.19236 0.86618 0.98888 0.86547 1.45810 1.15951 1.64294 1.11142 1.18288 0.87167 0.76165 0.81254 1.90629 1.41841 1.59587 1.56296 1.19142 0.95037 1.18956 0.96372 1.20660 0.92352 0.96586 0.97561 1.20988 0.97362 1.07292 0.96082 1.18112 0.92686 0.87539 0.91682 1.20099 0.91897 1.24044 1.14193 0.89666 1.26897 1.03644 0.95143 0.92334 1.69760 1.29951 1.20949 1.21408 0.85186 0.75547 0.78852 0.79883 1.18308 1.18853 1.18254 1.20860 0.95507 1.11774 0.99087 1.20508 0.96086 0.93998 0.94348 0.89967 0.92437 0.92790 0.89591 0.89403 0.86811 0.87537 0.89606 0.93692 0.92017 0.90680 0.90097 0.76061 0.86595 0.87104 0.89231 0.87802 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.68 16 2 C -0.05 -1.05 6.44 29.85 0.19 -0.85 16 3 C 0.04 0.89 6.58 43.58 0.29 1.17 16 4 N -0.39 -10.23 12.07 -49.57 -0.60 -10.82 16 5 O 0.09 2.16 11.20 71.67 0.80 2.97 16 6 C 0.01 0.16 6.74 25.04 0.17 0.32 16 7 C -0.04 -0.65 6.35 29.85 0.19 -0.46 16 8 C -0.15 -2.55 9.89 71.98 0.71 -1.84 16 9 C -0.23 -5.28 5.69 -19.74 -0.11 -5.39 16 10 C 0.21 5.36 6.00 85.63 0.51 5.87 16 11 N -0.72 -21.87 5.50 -469.88 -2.58 -24.45 16 12 C 0.58 22.80 7.76 86.73 0.67 23.47 16 13 O -0.60 -26.67 16.32 -3.99 -0.07 -26.73 16 14 C -0.29 -12.74 5.89 -19.93 -0.12 -12.86 16 15 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 16 C -0.20 -9.63 8.64 22.47 0.19 -9.43 16 17 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 18 C -0.48 -23.70 9.04 23.46 0.21 -23.49 16 19 H 0.09 4.07 7.91 -2.91 -0.02 4.05 16 20 C 0.04 1.79 5.14 85.35 0.44 2.23 16 21 N -0.80 -37.66 10.95 21.87 0.24 -37.42 16 22 Si 0.99 34.44 29.60 68.60 2.03 36.47 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 25 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 26 C -0.25 -12.26 9.73 22.47 0.22 -12.04 16 27 C -0.03 -1.40 9.52 22.25 0.21 -1.19 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.47 7.44 -2.38 -0.02 1.45 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.00 7.44 -2.38 -0.02 1.98 16 40 H 0.40 11.50 6.46 -92.71 -0.60 10.90 16 41 H 0.12 4.15 6.37 -2.91 -0.02 4.14 16 42 H 0.11 5.51 6.15 -2.91 -0.02 5.50 16 43 H 0.30 12.50 8.29 -92.71 -0.77 11.73 16 44 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.11 4.71 7.63 -2.91 -0.02 4.69 16 Total: -1.00 -60.37 382.50 4.83 -55.54 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.42 Total: 37.52 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.59 Total: -33.06 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -2.94 Total: -72.69 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.74 Total: -23.77 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -60.37 4.83 -55.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270378142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.630 kcal (2) G-P(sol) polarization free energy of solvation -60.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds