Wall clock time and date at job start Tue Mar 31 2020 15:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46531 * 2 1 4 4 C 1.50693 * 109.47451 * 119.99742 * 2 1 3 5 5 N 1.30434 * 125.99529 * 300.17741 * 4 2 1 6 6 N 1.39931 * 108.91647 * 180.29417 * 5 4 2 7 7 C 1.46501 * 125.74185 * 179.68669 * 6 5 4 8 8 C 1.34226 * 108.51661 * 359.71350 * 6 5 4 9 9 C 1.38132 * 107.40661 * 359.97438 * 8 6 5 10 10 C 1.47288 * 126.42638 * 180.02562 * 9 8 6 11 11 O 1.21516 * 119.99703 * 180.29754 * 10 9 8 12 12 O 1.34751 * 119.99858 * 0.02562 * 10 9 8 13 13 C 1.45194 * 116.99866 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47425 * 180.02562 * 13 12 10 15 15 C 1.38637 * 119.74956 * 269.73267 * 14 13 12 16 16 C 1.37619 * 120.24358 * 179.72129 * 15 14 13 17 17 C 1.40711 * 119.74897 * 0.56588 * 16 15 14 18 18 C 1.41393 * 120.24503 * 179.68504 * 17 16 15 19 19 H 1.08003 * 120.00034 * 155.31134 * 18 17 16 20 20 C 1.39941 * 120.00201 * 335.31291 * 18 17 16 21 21 N 1.30835 * 119.99677 * 342.23078 * 20 18 17 22 22 Si 1.86799 * 120.00307 * 162.23393 * 20 18 17 23 23 H 1.48500 * 109.47389 * 94.66291 * 22 20 18 24 24 H 1.48499 * 109.47087 * 214.66300 * 22 20 18 25 25 H 1.48501 * 109.47169 * 334.66121 * 22 20 18 26 26 C 1.40715 * 119.50969 * 359.70450 * 17 16 15 27 27 C 1.37622 * 119.74571 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47549 * 299.99635 * 1 2 3 29 29 H 1.08999 * 109.47530 * 60.00208 * 1 2 3 30 30 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47549 * 240.00365 * 2 1 3 32 32 H 1.09000 * 109.46912 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47421 * 299.99714 * 3 2 1 34 34 H 1.08998 * 109.47364 * 60.00200 * 3 2 1 35 35 H 1.09003 * 109.47407 * 270.03106 * 7 6 5 36 36 H 1.08999 * 109.46690 * 30.03054 * 7 6 5 37 37 H 1.09006 * 109.46839 * 150.02644 * 7 6 5 38 38 H 1.07992 * 126.29861 * 179.97438 * 8 6 5 39 39 H 1.09002 * 109.47504 * 300.00055 * 13 12 10 40 40 H 1.09003 * 109.47254 * 60.00028 * 13 12 10 41 41 H 1.07998 * 119.87344 * 359.97113 * 15 14 13 42 42 H 1.08007 * 120.12060 * 180.28060 * 16 15 14 43 43 H 0.96998 * 119.99259 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.12853 * 179.97438 * 26 17 16 45 45 H 1.08003 * 119.87480 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7878 -0.3700 2.4656 6 7 2.4340 -1.2698 3.3205 7 6 2.4107 -1.2263 4.7847 8 6 3.0794 -2.1791 2.5733 9 6 2.8479 -1.8646 1.2483 10 6 3.3604 -2.5918 0.0744 11 8 3.0868 -2.2074 -1.0454 12 8 4.1370 -3.6801 0.2423 13 6 4.6057 -4.3471 -0.9592 14 6 5.4528 -5.5335 -0.5773 15 6 6.8206 -5.3781 -0.4135 16 6 7.6030 -6.4534 -0.0593 17 6 7.0113 -7.7167 0.1251 18 6 7.8062 -8.8300 0.4826 19 1 7.3616 -9.6669 1.0008 20 6 9.1690 -8.8477 0.1651 21 7 9.6397 -8.0320 -0.7430 22 14 10.3161 -10.0360 1.0378 23 1 10.4656 -11.2684 0.2229 24 1 11.6448 -9.3982 1.2192 25 1 9.7497 -10.3860 2.3652 26 6 5.6228 -7.8638 -0.0493 27 6 4.8591 -6.7734 -0.3982 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1298 1.4427 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.2412 -0.6183 5.1435 36 1 1.4697 -0.7903 5.1202 37 1 2.5036 -2.2380 5.1797 38 1 3.6709 -3.0047 2.9405 39 1 3.7505 -4.6851 -1.5443 40 1 5.1999 -3.6519 -1.5524 41 1 7.2733 -4.4086 -0.5606 42 1 8.6678 -6.3290 0.0722 43 1 10.5842 -8.0445 -0.9633 44 1 5.1583 -8.8290 0.0893 45 1 3.7931 -6.8839 -0.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271808036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:49 Heat of formation + Delta-G solvation = -22.447985 kcal Electronic energy + Delta-G solvation = -26647.494342 eV Core-core repulsion = 22823.260631 eV Total energy + Delta-G solvation = -3824.233711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.57744 -40.93562 -39.41854 -37.49047 -36.61802 -35.65127 -33.50988 -32.62828 -31.54278 -31.20000 -28.95453 -28.03605 -27.93916 -25.79067 -24.30625 -23.24592 -22.92981 -21.90126 -21.57224 -20.12609 -19.25427 -18.71772 -17.95654 -17.40874 -17.16096 -16.78650 -16.46680 -15.94615 -15.69124 -15.54512 -15.43774 -15.38533 -14.48463 -14.37509 -14.29584 -13.91768 -13.87836 -13.81238 -13.52971 -13.33523 -13.23778 -13.03396 -12.96867 -12.76736 -12.45688 -12.38074 -12.25845 -12.12890 -12.07554 -11.90871 -11.61964 -11.49969 -11.27245 -11.08998 -11.00759 -10.43931 -9.83032 -9.41859 -9.31843 -8.68079 -6.38136 0.31743 0.74889 0.94469 1.12848 1.33369 1.39576 1.46496 1.54803 2.05672 2.14763 2.20354 2.74489 3.25943 3.58413 3.71814 3.94791 4.05917 4.14190 4.15595 4.16649 4.23465 4.37088 4.42565 4.50788 4.52756 4.56871 4.57793 4.67983 4.70193 4.79117 4.91888 4.93884 5.02376 5.07976 5.13409 5.25532 5.32164 5.32547 5.40097 5.42242 5.65141 5.66864 5.81411 5.90774 6.07096 6.16943 6.33530 6.46662 6.65806 6.88958 6.90062 6.98819 8.28965 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.002322 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.192821 B =12056.545275 C =12765.764255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 C -0.132 4.132 4 C 0.137 3.863 5 N -0.311 5.311 6 N -0.356 5.356 7 C 0.085 3.915 8 C 0.144 3.856 9 C -0.314 4.314 10 C 0.538 3.462 11 O -0.544 6.544 12 O -0.355 6.355 13 C 0.144 3.856 14 C -0.226 4.226 15 C -0.079 4.079 16 C -0.193 4.193 17 C 0.088 3.912 18 C -0.493 4.493 19 H 0.080 0.920 20 C 0.035 3.965 21 N -0.820 5.820 22 Si 0.983 3.017 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.064 4.064 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.217 0.783 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.290 0.710 44 H 0.103 0.897 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 13.599 9.037 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.190 4.190 4 C -0.031 4.031 5 N -0.132 5.132 6 N -0.132 5.132 7 C -0.053 4.053 8 C -0.010 4.010 9 C -0.327 4.327 10 C 0.385 3.615 11 O -0.436 6.436 12 O -0.272 6.272 13 C 0.071 3.929 14 C -0.227 4.227 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.086 3.914 18 C -0.522 4.522 19 H 0.098 0.902 20 C -0.181 4.181 21 N -0.445 5.445 22 Si 0.804 3.196 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.181 1.181 26 C -0.264 4.264 27 C -0.082 4.082 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.234 0.766 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.341 14.592 9.548 21.364 hybrid contribution 1.254 -1.301 -0.569 1.894 sum -11.088 13.291 8.980 19.499 Atomic orbital electron populations 1.21725 0.92460 1.01695 1.03075 1.20040 0.97230 0.96379 0.92173 1.21729 1.00448 0.93733 1.03086 1.22609 0.93708 0.92480 0.94278 1.77086 1.20929 1.15412 0.99756 1.48783 1.35845 1.19830 1.08751 1.22475 1.05881 1.06650 0.70331 1.23672 0.93306 0.94045 0.89980 1.19528 1.16592 1.04718 0.91861 1.20369 0.74888 0.78063 0.88185 1.90703 1.58515 1.67538 1.26891 1.86681 1.61345 1.39764 1.39434 1.21509 0.96493 0.91203 0.83668 1.18952 0.93058 0.93454 1.17262 1.20762 0.93416 0.97467 0.98141 1.21256 0.99267 0.92589 1.08099 1.18030 0.92352 0.93130 0.87891 1.19913 0.94317 1.03641 1.34313 0.90213 1.26821 1.00145 0.97716 0.93399 1.69879 1.16765 1.34290 1.23556 0.85176 0.76976 0.78005 0.79488 1.18715 1.19032 1.18061 1.21160 0.94507 0.98088 1.12599 1.20693 0.98356 0.92231 0.96954 0.92017 0.90135 0.93663 0.88653 0.93768 0.90112 0.92015 0.88568 0.87957 0.86157 0.76617 0.91104 0.91649 0.87706 0.87872 0.89916 0.87924 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.17 71.98 0.66 -1.96 16 2 C -0.04 -0.92 3.26 -11.54 -0.04 -0.95 16 3 C -0.13 -2.66 9.18 71.98 0.66 -2.00 16 4 C 0.14 3.69 5.77 43.53 0.25 3.94 16 5 N -0.31 -7.63 12.50 -46.65 -0.58 -8.21 16 6 N -0.36 -6.86 3.98 -367.72 -1.46 -8.32 16 7 C 0.09 0.72 11.44 127.77 1.46 2.18 16 8 C 0.14 3.15 11.33 84.30 0.96 4.11 16 9 C -0.31 -9.04 6.13 -20.16 -0.12 -9.17 16 10 C 0.54 18.31 7.95 70.20 0.56 18.87 16 11 O -0.54 -20.31 14.36 19.78 0.28 -20.03 16 12 O -0.36 -12.72 10.03 -56.61 -0.57 -13.28 16 13 C 0.14 5.35 5.59 71.24 0.40 5.75 16 14 C -0.23 -9.72 5.54 -19.67 -0.11 -9.83 16 15 C -0.08 -3.68 9.67 22.22 0.21 -3.47 16 16 C -0.19 -10.03 8.70 22.73 0.20 -9.84 16 17 C 0.09 4.71 5.57 -21.29 -0.12 4.59 16 18 C -0.49 -25.97 9.05 23.46 0.21 -25.76 16 19 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 20 C 0.04 1.72 5.14 85.25 0.44 2.16 16 21 N -0.82 -42.04 10.97 21.83 0.24 -41.80 16 22 Si 0.98 36.95 29.59 68.60 2.03 38.99 16 23 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 25 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 26 C -0.24 -11.77 9.80 22.73 0.22 -11.55 16 27 C -0.06 -2.78 9.67 22.22 0.21 -2.57 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 2.73 5.61 -2.39 -0.01 2.71 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.22 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.07 2.50 8.08 -2.39 -0.02 2.48 16 40 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 41 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.10 5.60 6.18 -2.91 -0.02 5.58 16 43 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 44 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -66.44 385.35 6.99 -59.46 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.99 Total: 28.70 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 6.06 Total: -35.49 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -1.81 Total: -58.33 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.28 Total: -33.32 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.99 kcal Total: -66.44 6.99 -59.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271808036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.007 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds