Wall clock time and date at job start Tue Mar 31 2020 15:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47297 * 179.97438 * 3 2 1 5 5 N 1.29940 * 125.37578 * 89.99675 * 4 3 2 6 6 C 1.36065 * 108.47409 * 180.02562 * 5 4 3 7 7 C 1.47425 * 126.44709 * 179.97438 * 6 5 4 8 8 O 1.21615 * 119.99764 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00005 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00240 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46783 * 34.99218 * 10 9 7 12 12 C 1.53000 * 109.47369 * 154.99867 * 10 9 7 13 13 C 1.50700 * 109.46751 * 294.99698 * 12 10 9 14 14 H 1.08001 * 120.00624 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99683 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47271 * 89.99972 * 17 15 13 19 19 H 1.48498 * 109.47291 * 209.99717 * 17 15 13 20 20 H 1.48505 * 109.47237 * 330.00119 * 17 15 13 21 21 C 1.50703 * 109.47065 * 275.00247 * 10 9 7 22 22 C 1.38235 * 120.00292 * 139.99706 * 21 10 9 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 10 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 319.96999 * 21 10 9 27 27 C 1.36090 * 107.10280 * 0.23421 * 6 5 4 28 28 O 1.34046 * 125.37911 * 270.03848 * 4 3 2 29 29 H 1.08996 * 109.47624 * 300.00284 * 1 2 3 30 30 H 1.09001 * 109.46879 * 60.00573 * 1 2 3 31 31 H 1.09000 * 109.46721 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47624 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.46879 * 119.99427 * 2 1 3 34 34 H 1.08996 * 109.47073 * 59.99379 * 3 2 1 35 35 H 1.09006 * 109.46417 * 300.00149 * 3 2 1 36 36 H 0.96997 * 120.00034 * 359.97438 * 9 7 6 37 37 H 1.08995 * 109.46916 * 54.99829 * 12 10 9 38 38 H 1.09003 * 109.46852 * 175.00197 * 12 10 9 39 39 H 0.97001 * 119.99717 * 180.02562 * 16 15 13 40 40 H 1.08001 * 119.99730 * 359.97438 * 22 21 10 41 41 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 43 43 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00455 * 0.02562 * 26 21 10 45 45 H 1.08001 * 126.52354 * 179.77236 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2997 1.4424 -1.0585 6 6 5.6014 1.4419 -0.6624 7 6 6.7845 1.4410 -1.5419 8 8 7.9009 1.4402 -1.0594 9 7 6.6290 1.4411 -2.8806 10 6 7.8047 1.4408 -3.7547 11 1 8.5984 0.8512 -3.2958 12 6 7.4338 0.8313 -5.1082 13 6 7.0739 -0.6204 -4.9236 14 1 7.1060 -1.0639 -3.9394 15 6 6.7036 -1.3825 -6.0114 16 7 6.6650 -0.8426 -7.2100 17 14 6.2569 -3.1818 -5.7825 18 1 4.8005 -3.3003 -5.5174 19 1 6.5988 -3.9373 -7.0144 20 1 7.0160 -3.7381 -4.6338 21 6 8.2821 2.8561 -3.9549 22 6 9.6363 3.1333 -3.9688 23 6 10.0742 4.4314 -4.1530 24 6 9.1580 5.4523 -4.3242 25 6 7.8038 5.1748 -4.3118 26 6 7.3658 3.8770 -4.1253 27 6 5.6056 1.4365 0.6985 28 8 4.3226 1.4420 1.0939 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 5.7386 1.4414 -3.2655 37 1 6.5815 1.3667 -5.5264 38 1 8.2824 0.9117 -5.7876 39 1 6.4042 -1.3787 -7.9752 40 1 10.3522 2.3356 -3.8357 41 1 11.1322 4.6482 -4.1634 42 1 9.4999 6.4672 -4.4637 43 1 7.0879 5.9724 -4.4451 44 1 6.3078 3.6604 -4.1145 45 1 6.4755 1.4313 1.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273711424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:15 Heat of formation + Delta-G solvation = -11.062691 kcal Electronic energy + Delta-G solvation = -27309.581115 eV Core-core repulsion = 23485.841108 eV Total energy + Delta-G solvation = -3823.740007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.39982 -39.54608 -38.31771 -35.65082 -35.19860 -34.64391 -32.68631 -31.17329 -30.59945 -30.39673 -28.77712 -27.28298 -25.25790 -23.70155 -22.45680 -22.26770 -21.92234 -21.23460 -20.23311 -19.70467 -17.95765 -16.86573 -16.72339 -16.31201 -16.13324 -15.55368 -15.29413 -14.93036 -14.84676 -14.51245 -14.12171 -14.05821 -13.77132 -13.54616 -13.13347 -12.99911 -12.71889 -12.49552 -12.45888 -12.08990 -12.06232 -11.65170 -11.54695 -11.16227 -11.12229 -11.00621 -10.91001 -10.74879 -10.71143 -10.58688 -10.45212 -9.76130 -9.72701 -9.26995 -8.99203 -8.52509 -8.43327 -8.40074 -8.17025 -6.05936 -4.08885 1.19055 1.79507 1.82693 2.11140 2.55164 3.29570 3.36228 3.40592 3.53701 3.67066 3.91795 4.25947 4.42946 4.63830 4.67667 4.82088 4.98275 5.11302 5.24117 5.28457 5.30064 5.31328 5.35164 5.39819 5.46807 5.56242 5.57237 5.64493 5.78824 5.87847 5.93352 5.95810 5.99939 6.09630 6.20971 6.37372 6.45733 6.58984 6.86842 6.87327 6.89139 7.12749 7.42398 7.48910 7.52279 7.65051 7.90597 8.14188 8.28664 8.68330 8.96299 9.55829 11.04702 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.004606 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3918.972782 B = 6077.422340 C = 8825.090829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.021 4.021 4 C 0.191 3.809 5 N -0.451 5.451 6 C -0.058 4.058 7 C 0.595 3.405 8 O -0.548 6.548 9 N -0.678 5.678 10 C 0.183 3.817 11 H 0.089 0.911 12 C 0.024 3.976 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.072 4.072 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.107 4.107 27 C 0.000 4.000 28 O -0.200 6.200 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.410 0.590 37 H 0.026 0.974 38 H 0.036 0.964 39 H 0.261 0.739 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 8.503 13.738 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.060 4.060 4 C -0.018 4.018 5 N -0.181 5.181 6 C -0.179 4.179 7 C 0.379 3.621 8 O -0.426 6.426 9 N -0.326 5.326 10 C 0.079 3.921 11 H 0.107 0.893 12 C -0.013 4.013 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.073 4.073 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.074 4.074 28 O -0.086 6.086 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.246 0.754 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.778 8.449 13.240 17.106 hybrid contribution -0.303 -1.013 0.456 1.152 sum -7.081 7.436 13.696 17.117 Atomic orbital electron populations 1.21745 0.94626 1.02310 1.02107 1.21565 0.96495 0.94715 1.03500 1.20199 0.80852 0.99626 1.05277 1.26307 0.96330 1.00709 0.78418 1.70818 1.00807 1.16768 1.29727 1.22008 0.92267 1.10496 0.93086 1.16766 0.85867 0.76974 0.82446 1.90778 1.24222 1.52119 1.75530 1.45811 1.11222 1.71085 1.04458 1.20338 0.87440 0.90517 0.93806 0.89303 1.19397 0.97910 0.95552 0.88459 1.21122 1.45877 0.94766 0.93949 0.92457 1.24966 0.95477 0.98398 0.95189 1.69961 1.47983 1.36375 0.98752 0.86604 0.78766 0.85146 0.77584 1.20656 1.21207 1.19898 1.20527 0.93491 0.96407 0.96923 1.21013 0.95282 0.96564 0.99723 1.21035 0.99120 0.93068 1.00924 1.20997 0.93428 0.98675 1.02162 1.21042 0.95636 0.96506 1.01123 1.20941 0.99533 0.92446 0.99571 1.25224 0.84624 1.01688 0.95849 1.84352 1.16753 1.69541 1.37970 0.92532 0.92168 0.92171 0.90597 0.91485 0.88925 0.87376 0.75387 0.95616 0.94562 0.92895 0.86103 0.86575 0.86834 0.86736 0.86504 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.35 16 4 C 0.19 2.42 7.56 -13.08 -0.10 2.32 16 5 N -0.45 -7.11 11.06 -7.66 -0.08 -7.19 16 6 C -0.06 -0.97 6.99 -83.02 -0.58 -1.55 16 7 C 0.60 11.55 7.77 -12.52 -0.10 11.46 16 8 O -0.55 -11.68 16.55 5.26 0.09 -11.60 16 9 N -0.68 -13.46 4.03 -56.01 -0.23 -13.69 16 10 C 0.18 3.87 2.12 -69.08 -0.15 3.73 16 11 H 0.09 2.01 7.44 -51.93 -0.39 1.63 16 12 C 0.02 0.59 4.49 -27.88 -0.13 0.47 16 13 C -0.52 -14.11 8.84 -34.44 -0.30 -14.41 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.07 -1.39 4.91 -104.62 -0.51 -1.90 16 22 C -0.11 -1.90 9.67 -39.59 -0.38 -2.28 16 23 C -0.12 -1.89 10.05 -39.59 -0.40 -2.29 16 24 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.11 -1.89 9.32 -39.58 -0.37 -2.26 16 27 C 0.00 -0.01 11.95 29.96 0.36 0.35 16 28 O -0.20 -2.50 10.73 6.53 0.07 -2.43 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.41 8.05 8.33 -40.82 -0.34 7.71 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.12 2.01 7.72 -52.49 -0.41 1.60 16 45 H 0.23 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -32.45 390.48 -8.65 -41.10 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.59 Total: 8.24 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.50 Total: -11.58 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.43 Total: -46.10 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.16 Total: -14.03 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.45 -8.65 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273711424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.039 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds