Wall clock time and date at job start Tue Mar 31 2020 15:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47297 * 179.97438 * 3 2 1 5 5 N 1.29940 * 125.37578 * 89.99675 * 4 3 2 6 6 C 1.36065 * 108.47409 * 180.02562 * 5 4 3 7 7 C 1.47425 * 126.44709 * 179.97438 * 6 5 4 8 8 O 1.21615 * 119.99764 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00005 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00240 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46783 * 34.99218 * 10 9 7 12 12 C 1.53000 * 109.47369 * 154.99867 * 10 9 7 13 13 C 1.50700 * 109.46751 * 294.99698 * 12 10 9 14 14 H 1.08001 * 120.00624 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99683 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47271 * 89.99972 * 17 15 13 19 19 H 1.48498 * 109.47291 * 209.99717 * 17 15 13 20 20 H 1.48505 * 109.47237 * 330.00119 * 17 15 13 21 21 C 1.50703 * 109.47065 * 275.00247 * 10 9 7 22 22 C 1.38235 * 120.00292 * 139.99706 * 21 10 9 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 10 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 319.96999 * 21 10 9 27 27 C 1.36090 * 107.10280 * 0.23421 * 6 5 4 28 28 O 1.34046 * 125.37911 * 270.03848 * 4 3 2 29 29 H 1.08996 * 109.47624 * 300.00284 * 1 2 3 30 30 H 1.09001 * 109.46879 * 60.00573 * 1 2 3 31 31 H 1.09000 * 109.46721 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47624 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.46879 * 119.99427 * 2 1 3 34 34 H 1.08996 * 109.47073 * 59.99379 * 3 2 1 35 35 H 1.09006 * 109.46417 * 300.00149 * 3 2 1 36 36 H 0.96997 * 120.00034 * 359.97438 * 9 7 6 37 37 H 1.08995 * 109.46916 * 54.99829 * 12 10 9 38 38 H 1.09003 * 109.46852 * 175.00197 * 12 10 9 39 39 H 0.97001 * 119.99717 * 180.02562 * 16 15 13 40 40 H 1.08001 * 119.99730 * 359.97438 * 22 21 10 41 41 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 43 43 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00455 * 0.02562 * 26 21 10 45 45 H 1.08001 * 126.52354 * 179.77236 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2997 1.4424 -1.0585 6 6 5.6014 1.4419 -0.6624 7 6 6.7845 1.4410 -1.5419 8 8 7.9009 1.4402 -1.0594 9 7 6.6290 1.4411 -2.8806 10 6 7.8047 1.4408 -3.7547 11 1 8.5984 0.8512 -3.2958 12 6 7.4338 0.8313 -5.1082 13 6 7.0739 -0.6204 -4.9236 14 1 7.1060 -1.0639 -3.9394 15 6 6.7036 -1.3825 -6.0114 16 7 6.6650 -0.8426 -7.2100 17 14 6.2569 -3.1818 -5.7825 18 1 4.8005 -3.3003 -5.5174 19 1 6.5988 -3.9373 -7.0144 20 1 7.0160 -3.7381 -4.6338 21 6 8.2821 2.8561 -3.9549 22 6 9.6363 3.1333 -3.9688 23 6 10.0742 4.4314 -4.1530 24 6 9.1580 5.4523 -4.3242 25 6 7.8038 5.1748 -4.3118 26 6 7.3658 3.8770 -4.1253 27 6 5.6056 1.4365 0.6985 28 8 4.3226 1.4420 1.0939 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 5.7386 1.4414 -3.2655 37 1 6.5815 1.3667 -5.5264 38 1 8.2824 0.9117 -5.7876 39 1 6.4042 -1.3787 -7.9752 40 1 10.3522 2.3356 -3.8357 41 1 11.1322 4.6482 -4.1634 42 1 9.4999 6.4672 -4.4637 43 1 7.0879 5.9724 -4.4451 44 1 6.3078 3.6604 -4.1145 45 1 6.4755 1.4313 1.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273711424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:14 Heat of formation + Delta-G solvation = -31.656124 kcal Electronic energy + Delta-G solvation = -27310.474113 eV Core-core repulsion = 23485.841108 eV Total energy + Delta-G solvation = -3824.633006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.48426 -41.04594 -39.70213 -36.87929 -36.41778 -35.70806 -34.74129 -32.60941 -31.74246 -31.55452 -30.57073 -28.12216 -26.99984 -25.12517 -23.82751 -23.39952 -23.20914 -22.26151 -21.47919 -21.22836 -19.27768 -18.64584 -17.85426 -17.70761 -17.51843 -17.06166 -16.51442 -16.27488 -16.01119 -15.83602 -15.54178 -15.36877 -14.98231 -14.60518 -14.45064 -14.21171 -14.19680 -14.12242 -13.71032 -13.48051 -13.02452 -12.97513 -12.76620 -12.66346 -12.51897 -12.43391 -12.18459 -12.08448 -11.91256 -11.88176 -11.63549 -11.62804 -11.39225 -11.27358 -10.61265 -10.21119 -9.95283 -9.77809 -9.55544 -8.23017 -6.33151 0.05362 0.48129 0.53693 0.94976 1.36201 1.36765 1.47814 1.54370 2.14468 2.25294 2.37287 2.82845 2.96483 3.11032 3.70612 3.75623 3.95554 4.00501 4.02957 4.08630 4.18823 4.28209 4.30347 4.39519 4.49421 4.59636 4.61348 4.70332 4.72334 4.75542 4.77988 4.91949 5.02068 5.09401 5.16972 5.19960 5.24506 5.27639 5.37945 5.44537 5.54667 5.58984 5.61896 5.74152 5.84414 6.12697 6.17423 6.35855 6.63946 6.78139 7.12733 7.35314 8.87894 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.004606 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3918.972782 B = 6077.422340 C = 8825.090829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.020 4.020 4 C 0.203 3.797 5 N -0.485 5.485 6 C -0.098 4.098 7 C 0.594 3.406 8 O -0.574 6.574 9 N -0.679 5.679 10 C 0.198 3.802 11 H 0.065 0.935 12 C 0.039 3.961 13 C -0.531 4.531 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.273 1.273 21 C -0.099 4.099 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.123 4.123 27 C 0.027 3.973 28 O -0.191 6.191 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.409 0.591 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.265 0.735 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.145 0.855 44 H 0.111 0.889 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 9.782 15.365 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.058 4.058 4 C -0.007 4.007 5 N -0.215 5.215 6 C -0.217 4.217 7 C 0.381 3.619 8 O -0.455 6.455 9 N -0.326 5.326 10 C 0.094 3.906 11 H 0.083 0.917 12 C 0.002 3.998 13 C -0.569 4.569 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.101 4.101 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.047 4.047 28 O -0.077 6.077 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.244 0.756 37 H 0.026 0.974 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.166 0.834 42 H 0.172 0.828 43 H 0.162 0.838 44 H 0.129 0.871 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.804 9.731 14.864 19.405 hybrid contribution -0.002 -1.346 -0.017 1.346 sum -7.806 8.386 14.848 18.754 Atomic orbital electron populations 1.21722 0.92915 1.02653 1.03082 1.21530 0.97892 0.94277 1.02324 1.20497 0.77959 1.00132 1.07218 1.27139 0.97590 0.98309 0.77650 1.70771 1.00790 1.18580 1.31371 1.21702 0.91838 1.14231 0.93895 1.17099 0.86631 0.75949 0.82227 1.90740 1.25529 1.53446 1.75823 1.45724 1.10554 1.71489 1.04882 1.19862 0.87169 0.91885 0.91705 0.91663 1.19122 0.95942 0.94704 0.90074 1.21358 1.45844 0.96054 0.93654 0.93261 1.25758 0.95314 1.02695 0.94845 1.70067 1.48763 1.38045 0.99490 0.85597 0.78753 0.79949 0.77658 1.19727 1.20376 1.19729 1.20398 0.94695 0.95372 0.99595 1.21188 0.94650 0.98143 1.00804 1.21416 1.01116 0.91930 0.99434 1.21485 0.92748 1.00317 0.99860 1.21417 0.97050 0.95990 0.99819 1.21027 0.99090 0.93483 1.00556 1.25697 0.85623 0.98483 0.94899 1.84407 1.16321 1.69225 1.37732 0.90746 0.91996 0.92197 0.93148 0.91350 0.85673 0.86681 0.75554 0.97366 0.97170 0.92619 0.86454 0.83418 0.82844 0.83763 0.87096 0.72736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 3 C -0.02 -0.30 5.84 29.85 0.17 -0.13 16 4 C 0.20 4.88 7.56 88.39 0.67 5.55 16 5 N -0.49 -15.42 11.06 -293.04 -3.24 -18.66 16 6 C -0.10 -3.30 6.99 40.41 0.28 -3.02 16 7 C 0.59 24.11 7.77 86.66 0.67 24.79 16 8 O -0.57 -25.49 16.55 -4.08 -0.07 -25.56 16 9 N -0.68 -28.73 4.03 -449.37 -1.81 -30.54 16 10 C 0.20 9.01 2.12 44.25 0.09 9.10 16 11 H 0.07 3.21 7.44 -2.39 -0.02 3.19 16 12 C 0.04 2.06 4.49 29.85 0.13 2.19 16 13 C -0.53 -30.23 8.84 25.60 0.23 -30.01 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.73 5.46 84.66 0.46 1.19 16 16 N -0.92 -55.28 13.29 21.45 0.28 -55.00 16 17 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.10 -4.00 4.91 -19.87 -0.10 -4.10 16 22 C -0.13 -4.70 9.67 22.27 0.22 -4.48 16 23 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 24 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 25 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 26 C -0.12 -4.46 9.32 22.27 0.21 -4.25 16 27 C 0.03 0.70 11.95 67.32 0.80 1.50 16 28 O -0.19 -4.41 10.73 0.44 0.00 -4.40 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.41 17.23 8.33 -92.71 -0.77 16.46 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.12 4.18 8.04 -2.91 -0.02 4.15 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.11 4.01 7.72 -2.91 -0.02 3.99 16 45 H 0.26 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -73.27 390.48 2.83 -70.44 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.22 Total: 30.75 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 5.41 Total: -14.01 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.77 Total: -104.19 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.06 Total: -29.96 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.27 2.83 -70.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273711424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.786 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds