Wall clock time and date at job start Tue Mar 31 2020 15:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47598 * 2 1 4 4 C 1.50703 * 109.47235 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37634 * 90.00597 * 4 3 2 6 6 C 1.36059 * 108.48127 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.45311 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00137 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99984 * 359.97438 * 7 6 5 10 10 C 1.46499 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47061 * 324.99834 * 10 9 7 12 12 C 1.53003 * 109.46582 * 205.00130 * 10 9 7 13 13 C 1.50699 * 109.47403 * 65.00009 * 12 10 9 14 14 H 1.07997 * 119.99795 * 359.97438 * 13 12 10 15 15 C 1.37882 * 119.99840 * 179.97438 * 13 12 10 16 16 N 1.31508 * 120.00102 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99669 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47213 * 59.99765 * 17 15 13 19 19 H 1.48504 * 109.47092 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47118 * 299.99548 * 17 15 13 21 21 C 1.50698 * 109.47327 * 85.00119 * 10 9 7 22 22 C 1.38234 * 120.00106 * 39.72075 * 21 10 9 23 23 C 1.38236 * 119.99910 * 179.80868 * 22 21 10 24 24 C 1.38236 * 120.00014 * 0.40319 * 23 22 21 25 25 C 1.38234 * 119.99856 * 359.85065 * 24 23 22 26 26 C 1.38233 * 120.00243 * 359.96130 * 25 24 23 27 27 C 1.36092 * 107.10283 * 359.97438 * 6 5 4 28 28 O 1.34047 * 125.38204 * 270.02594 * 4 3 2 29 29 H 1.08997 * 109.46759 * 59.99163 * 1 2 3 30 30 H 1.08991 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46494 * 299.99926 * 1 2 3 32 32 H 1.09003 * 109.46985 * 239.99914 * 2 1 3 33 33 H 1.09004 * 109.47071 * 120.00668 * 2 1 3 34 34 H 1.09005 * 109.47137 * 60.00468 * 3 2 1 35 35 H 1.08992 * 109.47313 * 300.00071 * 3 2 1 36 36 H 0.96998 * 119.99500 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.46489 * 185.00193 * 12 10 9 38 38 H 1.08999 * 109.46989 * 304.99122 * 12 10 9 39 39 H 0.97000 * 120.00370 * 179.97438 * 16 15 13 40 40 H 1.08006 * 119.99887 * 0.02562 * 22 21 10 41 41 H 1.08000 * 119.99531 * 180.23440 * 23 22 21 42 42 H 1.07996 * 120.00063 * 179.83235 * 24 23 22 43 43 H 1.07998 * 120.00137 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00190 * 180.02562 * 26 25 24 45 45 H 1.07995 * 126.53297 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4422 -1.0585 6 6 5.6015 1.4416 -0.6625 7 6 6.7846 1.4407 -1.5420 8 8 7.9009 1.4407 -1.0596 9 7 6.6290 1.4400 -2.8808 10 6 7.8047 1.4386 -3.7549 11 1 8.5990 2.0278 -3.2964 12 6 7.4344 2.0477 -5.1087 13 6 7.0759 3.4999 -4.9250 14 1 7.1084 3.9438 -3.9411 15 6 6.7062 4.2616 -6.0132 16 7 6.6671 3.7211 -7.2115 17 14 6.2625 6.0618 -5.7857 18 1 7.4247 6.7899 -5.2161 19 1 5.9029 6.6530 -7.0997 20 1 5.1065 6.1735 -4.8603 21 6 8.2807 0.0228 -3.9543 22 6 7.3634 -0.9983 -4.1178 23 6 7.8001 -2.2965 -4.3048 24 6 9.1541 -2.5748 -4.3199 25 6 10.0713 -1.5545 -4.1511 26 6 9.6347 -0.2558 -3.9681 27 6 5.6059 1.4419 0.6984 28 8 4.3228 1.4419 1.0939 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.6769 1.9563 0.8901 35 1 1.6768 1.9563 -0.8899 36 1 5.7386 1.4397 -3.2656 37 1 8.2829 1.9660 -5.7880 38 1 6.5816 1.5128 -5.5266 39 1 6.4067 4.2569 -7.9770 40 1 6.3054 -0.7813 -4.1030 41 1 7.0834 -3.0936 -4.4363 42 1 9.4952 -3.5894 -4.4632 43 1 11.1291 -1.7719 -4.1625 44 1 10.3513 0.5414 -3.8367 45 1 6.4757 1.4419 1.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273711426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:18 Heat of formation + Delta-G solvation = -10.967568 kcal Electronic energy + Delta-G solvation = -27309.823027 eV Core-core repulsion = 23486.087145 eV Total energy + Delta-G solvation = -3823.735882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.39936 -39.54673 -38.31778 -35.67221 -35.19838 -34.64840 -32.68526 -31.17514 -30.60617 -30.39767 -28.77754 -27.29461 -25.25658 -23.70151 -22.48132 -22.26633 -21.92348 -21.24007 -20.23524 -19.70413 -17.96088 -16.84354 -16.74551 -16.31067 -16.13130 -15.56203 -15.32114 -14.92893 -14.85350 -14.51400 -14.11346 -14.06967 -13.77674 -13.56514 -13.13336 -12.99895 -12.71754 -12.49702 -12.47160 -12.09112 -12.08118 -11.68639 -11.54597 -11.17395 -11.11425 -11.03527 -10.91119 -10.74616 -10.70015 -10.60867 -10.44783 -9.75842 -9.72589 -9.28004 -8.99288 -8.52438 -8.42972 -8.39976 -8.16997 -6.05493 -4.08617 1.19067 1.79463 1.82603 2.11273 2.55025 3.31860 3.35985 3.39520 3.54090 3.66555 3.91617 4.25891 4.43273 4.61782 4.64993 4.80343 4.96923 5.10383 5.22910 5.28382 5.29982 5.31527 5.34059 5.39712 5.44826 5.55738 5.56789 5.63519 5.75146 5.84584 5.93276 5.95308 5.95782 6.09451 6.20954 6.37320 6.45665 6.59031 6.86802 6.87231 6.89167 7.12763 7.42325 7.48996 7.52317 7.65183 7.90787 8.14223 8.28948 8.68347 8.96317 9.56069 11.05099 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007089 B = 0.004451 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.724598 B = 6289.107483 C = 8647.230780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.023 4.023 4 C 0.192 3.808 5 N -0.451 5.451 6 C -0.058 4.058 7 C 0.595 3.405 8 O -0.548 6.548 9 N -0.678 5.678 10 C 0.183 3.817 11 H 0.089 0.911 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.072 4.072 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.123 4.123 26 C -0.107 4.107 27 C 0.000 4.000 28 O -0.200 6.200 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.410 0.590 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 -10.000 13.734 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.061 4.061 4 C -0.017 4.017 5 N -0.181 5.181 6 C -0.178 4.178 7 C 0.379 3.621 8 O -0.426 6.426 9 N -0.326 5.326 10 C 0.079 3.921 11 H 0.107 0.893 12 C -0.013 4.013 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.073 4.073 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.126 4.126 27 C -0.074 4.074 28 O -0.086 6.086 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.246 0.754 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.798 -9.937 13.231 17.889 hybrid contribution -0.292 1.052 0.469 1.188 sum -7.090 -8.885 13.700 17.802 Atomic orbital electron populations 1.21752 0.94625 1.02243 1.02239 1.21547 0.96495 0.94745 1.03270 1.20209 0.80882 0.99547 1.05455 1.26298 0.96319 1.00714 0.78416 1.70812 1.00812 1.16751 1.29737 1.22005 0.92267 1.10493 0.93086 1.16767 0.85866 0.76973 0.82447 1.90777 1.24217 1.52120 1.75534 1.45815 1.11222 1.71085 1.04455 1.20338 0.87447 0.90515 0.93813 0.89301 1.19390 0.97900 0.95533 0.88444 1.21086 1.46066 0.94754 0.93940 0.92502 1.24960 0.95445 0.98398 0.95183 1.69944 1.47931 1.36445 0.98756 0.86658 0.78992 0.85196 0.77189 1.20225 1.21281 1.20264 1.20525 0.93484 0.96398 0.96910 1.20941 0.99524 0.92442 0.99604 1.21039 0.95639 0.96496 1.01117 1.20995 0.93422 0.98679 1.02168 1.21036 0.99117 0.93063 1.00925 1.21015 0.95292 0.96558 0.99727 1.25225 0.84621 1.01692 0.95847 1.84354 1.16753 1.69545 1.37973 0.92126 0.92213 0.92473 0.90803 0.91526 0.88870 0.87277 0.75384 0.94580 0.95625 0.92831 0.86513 0.86742 0.86836 0.86576 0.86104 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.02 -0.19 5.84 -27.88 -0.16 -0.36 16 4 C 0.19 2.43 7.56 -13.08 -0.10 2.33 16 5 N -0.45 -7.13 11.06 -7.66 -0.08 -7.21 16 6 C -0.06 -0.97 6.99 -83.03 -0.58 -1.55 16 7 C 0.60 11.56 7.77 -12.52 -0.10 11.46 16 8 O -0.55 -11.68 16.55 5.27 0.09 -11.59 16 9 N -0.68 -13.48 4.02 -56.01 -0.22 -13.70 16 10 C 0.18 3.87 2.12 -69.08 -0.15 3.73 16 11 H 0.09 2.01 7.44 -51.93 -0.39 1.63 16 12 C 0.02 0.61 4.50 -27.88 -0.13 0.48 16 13 C -0.52 -14.17 8.84 -34.44 -0.30 -14.47 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C -0.07 -1.38 4.92 -104.62 -0.51 -1.90 16 22 C -0.11 -1.89 9.33 -39.58 -0.37 -2.26 16 23 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 24 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 26 C -0.11 -1.90 9.67 -39.58 -0.38 -2.29 16 27 C 0.00 -0.01 11.95 29.96 0.36 0.35 16 28 O -0.20 -2.51 10.73 6.51 0.07 -2.44 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 8.06 8.33 -40.82 -0.34 7.72 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.12 2.01 7.71 -52.48 -0.40 1.60 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 45 H 0.23 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -32.46 390.47 -8.65 -41.11 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.59 Total: 8.08 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.50 Total: -11.41 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.43 Total: -46.15 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.16 Total: -14.03 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.46 -8.65 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273711426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.142 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds