Wall clock time and date at job start Tue Mar 31 2020 15:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47598 * 2 1 4 4 C 1.50703 * 109.47235 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37634 * 90.00597 * 4 3 2 6 6 C 1.36059 * 108.48127 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.45311 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00137 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99984 * 359.97438 * 7 6 5 10 10 C 1.46499 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47061 * 324.99834 * 10 9 7 12 12 C 1.53003 * 109.46582 * 205.00130 * 10 9 7 13 13 C 1.50699 * 109.47403 * 65.00009 * 12 10 9 14 14 H 1.07997 * 119.99795 * 359.97438 * 13 12 10 15 15 C 1.37882 * 119.99840 * 179.97438 * 13 12 10 16 16 N 1.31508 * 120.00102 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99669 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47213 * 59.99765 * 17 15 13 19 19 H 1.48504 * 109.47092 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47118 * 299.99548 * 17 15 13 21 21 C 1.50698 * 109.47327 * 85.00119 * 10 9 7 22 22 C 1.38234 * 120.00106 * 39.72075 * 21 10 9 23 23 C 1.38236 * 119.99910 * 179.80868 * 22 21 10 24 24 C 1.38236 * 120.00014 * 0.40319 * 23 22 21 25 25 C 1.38234 * 119.99856 * 359.85065 * 24 23 22 26 26 C 1.38233 * 120.00243 * 359.96130 * 25 24 23 27 27 C 1.36092 * 107.10283 * 359.97438 * 6 5 4 28 28 O 1.34047 * 125.38204 * 270.02594 * 4 3 2 29 29 H 1.08997 * 109.46759 * 59.99163 * 1 2 3 30 30 H 1.08991 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46494 * 299.99926 * 1 2 3 32 32 H 1.09003 * 109.46985 * 239.99914 * 2 1 3 33 33 H 1.09004 * 109.47071 * 120.00668 * 2 1 3 34 34 H 1.09005 * 109.47137 * 60.00468 * 3 2 1 35 35 H 1.08992 * 109.47313 * 300.00071 * 3 2 1 36 36 H 0.96998 * 119.99500 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.46489 * 185.00193 * 12 10 9 38 38 H 1.08999 * 109.46989 * 304.99122 * 12 10 9 39 39 H 0.97000 * 120.00370 * 179.97438 * 16 15 13 40 40 H 1.08006 * 119.99887 * 0.02562 * 22 21 10 41 41 H 1.08000 * 119.99531 * 180.23440 * 23 22 21 42 42 H 1.07996 * 120.00063 * 179.83235 * 24 23 22 43 43 H 1.07998 * 120.00137 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00190 * 180.02562 * 26 25 24 45 45 H 1.07995 * 126.53297 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4422 -1.0585 6 6 5.6015 1.4416 -0.6625 7 6 6.7846 1.4407 -1.5420 8 8 7.9009 1.4407 -1.0596 9 7 6.6290 1.4400 -2.8808 10 6 7.8047 1.4386 -3.7549 11 1 8.5990 2.0278 -3.2964 12 6 7.4344 2.0477 -5.1087 13 6 7.0759 3.4999 -4.9250 14 1 7.1084 3.9438 -3.9411 15 6 6.7062 4.2616 -6.0132 16 7 6.6671 3.7211 -7.2115 17 14 6.2625 6.0618 -5.7857 18 1 7.4247 6.7899 -5.2161 19 1 5.9029 6.6530 -7.0997 20 1 5.1065 6.1735 -4.8603 21 6 8.2807 0.0228 -3.9543 22 6 7.3634 -0.9983 -4.1178 23 6 7.8001 -2.2965 -4.3048 24 6 9.1541 -2.5748 -4.3199 25 6 10.0713 -1.5545 -4.1511 26 6 9.6347 -0.2558 -3.9681 27 6 5.6059 1.4419 0.6984 28 8 4.3228 1.4419 1.0939 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.6769 1.9563 0.8901 35 1 1.6768 1.9563 -0.8899 36 1 5.7386 1.4397 -3.2656 37 1 8.2829 1.9660 -5.7880 38 1 6.5816 1.5128 -5.5266 39 1 6.4067 4.2569 -7.9770 40 1 6.3054 -0.7813 -4.1030 41 1 7.0834 -3.0936 -4.4363 42 1 9.4952 -3.5894 -4.4632 43 1 11.1291 -1.7719 -4.1625 44 1 10.3513 0.5414 -3.8367 45 1 6.4757 1.4419 1.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273711426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:17 Heat of formation + Delta-G solvation = -31.521558 kcal Electronic energy + Delta-G solvation = -27310.714315 eV Core-core repulsion = 23486.087145 eV Total energy + Delta-G solvation = -3824.627170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.48564 -41.04687 -39.70274 -36.87860 -36.41599 -35.70692 -34.73915 -32.60832 -31.74330 -31.55237 -30.57079 -28.12131 -26.99775 -25.12499 -23.82540 -23.39926 -23.20431 -22.25720 -21.47982 -21.22792 -19.28095 -18.63830 -17.85347 -17.70685 -17.52155 -17.06694 -16.51310 -16.26954 -16.00658 -15.83256 -15.54284 -15.36854 -14.98045 -14.59972 -14.45128 -14.21322 -14.18025 -14.13156 -13.70575 -13.48232 -13.03065 -12.96183 -12.74982 -12.67401 -12.51271 -12.42478 -12.18645 -12.08002 -11.91206 -11.88275 -11.63029 -11.61652 -11.39764 -11.27632 -10.60703 -10.21151 -9.95259 -9.77984 -9.55586 -8.22382 -6.32810 0.05287 0.48029 0.53502 0.95024 1.37293 1.38857 1.47148 1.54065 2.14890 2.24840 2.37976 2.82499 2.96321 3.11594 3.70542 3.75444 3.95492 4.00371 4.03550 4.09155 4.18598 4.28557 4.30170 4.39549 4.49638 4.59883 4.61262 4.71138 4.72251 4.75467 4.78022 4.93430 5.02119 5.09324 5.16802 5.19958 5.25148 5.27844 5.38033 5.45789 5.54627 5.58866 5.61730 5.74330 5.84361 6.12878 6.17431 6.35783 6.63865 6.78305 7.12672 7.35678 8.88316 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007089 B = 0.004451 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.724598 B = 6289.107483 C = 8647.230780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.023 4.023 4 C 0.203 3.797 5 N -0.486 5.486 6 C -0.098 4.098 7 C 0.594 3.406 8 O -0.574 6.574 9 N -0.679 5.679 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.039 3.961 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.956 3.044 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.271 1.271 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.129 4.129 27 C 0.027 3.973 28 O -0.191 6.191 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.409 0.591 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.118 0.882 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 -11.007 15.364 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.061 4.061 4 C -0.007 4.007 5 N -0.215 5.215 6 C -0.217 4.217 7 C 0.381 3.619 8 O -0.455 6.455 9 N -0.327 5.327 10 C 0.094 3.906 11 H 0.084 0.916 12 C 0.002 3.998 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.781 3.219 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.100 4.100 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.047 4.047 28 O -0.077 6.077 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.244 0.756 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.162 0.838 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.136 0.864 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.761 -10.948 14.860 20.023 hybrid contribution -0.011 1.284 -0.005 1.284 sum -7.772 -9.664 14.856 19.352 Atomic orbital electron populations 1.21730 0.93079 1.02752 1.02924 1.21508 0.97709 0.93830 1.02572 1.20511 0.78015 1.00551 1.06986 1.27127 0.97569 0.98311 0.77654 1.70765 1.00802 1.18586 1.31375 1.21701 0.91835 1.14227 0.93900 1.17096 0.86627 0.75950 0.82224 1.90738 1.25514 1.53439 1.75823 1.45728 1.10551 1.71494 1.04883 1.19864 0.87179 0.91882 0.91712 0.91623 1.19114 0.95912 0.94705 0.90057 1.21340 1.46035 0.96038 0.93701 0.93202 1.25761 0.95263 1.02743 0.94825 1.70055 1.48711 1.38111 0.99492 0.85640 0.78839 0.79934 0.77469 1.19762 1.20395 1.19604 1.20395 0.94684 0.95359 0.99569 1.21026 0.99071 0.93491 1.00609 1.21412 0.97058 0.95974 0.99814 1.21483 0.92734 1.00324 0.99871 1.21417 1.01114 0.91924 0.99426 1.21191 0.94659 0.98140 1.00808 1.25700 0.85613 0.98486 0.94895 1.84408 1.16329 1.69235 1.37730 0.92162 0.91837 0.91067 0.92610 0.91173 0.85980 0.87032 0.75564 0.97205 0.97411 0.92610 0.87135 0.83789 0.82846 0.83411 0.86439 0.72720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 3 C -0.02 -0.34 5.84 29.85 0.17 -0.17 16 4 C 0.20 4.91 7.56 88.39 0.67 5.58 16 5 N -0.49 -15.47 11.06 -293.04 -3.24 -18.71 16 6 C -0.10 -3.30 6.99 40.41 0.28 -3.02 16 7 C 0.59 24.11 7.77 86.66 0.67 24.79 16 8 O -0.57 -25.45 16.55 -4.06 -0.07 -25.52 16 9 N -0.68 -28.74 4.02 -449.37 -1.81 -30.55 16 10 C 0.20 9.00 2.12 44.25 0.09 9.09 16 11 H 0.07 3.22 7.44 -2.39 -0.02 3.21 16 12 C 0.04 2.09 4.50 29.85 0.13 2.22 16 13 C -0.53 -30.34 8.84 25.60 0.23 -30.11 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.74 5.46 84.66 0.46 1.20 16 16 N -0.92 -55.29 13.29 21.45 0.28 -55.01 16 17 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.10 -3.98 4.92 -19.87 -0.10 -4.08 16 22 C -0.12 -4.48 9.33 22.27 0.21 -4.28 16 23 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 24 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 25 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 26 C -0.13 -4.70 9.67 22.27 0.22 -4.49 16 27 C 0.03 0.70 11.95 67.32 0.80 1.51 16 28 O -0.19 -4.43 10.73 0.37 0.00 -4.42 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 17.25 8.33 -92.71 -0.77 16.48 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.11 4.01 7.71 -2.91 -0.02 3.99 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 44 H 0.12 4.18 8.04 -2.91 -0.02 4.16 16 45 H 0.26 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -73.06 390.47 2.84 -70.22 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.22 Total: 30.80 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 5.41 Total: -13.68 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.76 Total: -104.27 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.06 Total: -29.94 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -73.06 2.84 -70.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273711426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.703 kcal (2) G-P(sol) polarization free energy of solvation -73.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds