Wall clock time and date at job start Tue Mar 31 2020 15:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46713 * 2 1 4 4 C 1.53001 * 109.46845 * 175.98964 * 3 2 1 5 5 C 1.52990 * 109.47432 * 295.28880 * 4 3 2 6 6 C 1.50700 * 109.47548 * 295.99278 * 3 2 1 7 7 N 1.30106 * 126.14129 * 300.04723 * 6 3 2 8 8 O 1.21282 * 110.59192 * 179.66372 * 7 6 3 9 9 C 1.34441 * 109.64052 * 0.46873 * 8 7 6 10 10 C 1.46373 * 126.72788 * 179.80145 * 9 8 7 11 11 C 1.34895 * 120.00142 * 359.68498 * 10 9 8 12 12 C 1.47036 * 119.99852 * 179.97438 * 11 10 9 13 13 C 1.39986 * 120.10119 * 180.02562 * 12 11 10 14 14 C 1.37624 * 119.89982 * 180.02562 * 13 12 11 15 15 C 1.39150 * 120.10122 * 0.27615 * 14 13 12 16 16 O 1.35606 * 119.89812 * 179.72733 * 15 14 13 17 17 C 1.34787 * 116.99894 * 5.50697 * 16 15 14 18 18 H 1.07995 * 120.00465 * 5.08280 * 17 16 15 19 19 C 1.38685 * 119.99438 * 185.08323 * 17 16 15 20 20 N 1.31530 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99643 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47369 * 90.00351 * 21 19 17 23 23 H 1.48507 * 109.46757 * 210.00177 * 21 19 17 24 24 H 1.48494 * 109.47208 * 329.99830 * 21 19 17 25 25 C 1.39150 * 120.19957 * 359.44580 * 15 14 13 26 26 C 1.37633 * 120.09595 * 0.55362 * 25 15 14 27 27 N 1.32611 * 106.53549 * 359.53990 * 9 8 7 28 28 H 1.09007 * 109.46760 * 185.03618 * 1 2 3 29 29 H 1.09000 * 109.47423 * 305.03516 * 1 2 3 30 30 H 1.08993 * 109.47077 * 65.04195 * 1 2 3 31 31 H 1.09000 * 109.46807 * 240.00070 * 2 1 3 32 32 H 1.08999 * 109.46958 * 120.00108 * 2 1 3 33 33 H 1.09005 * 109.47252 * 55.99817 * 3 2 1 34 34 H 1.08997 * 109.46616 * 55.29108 * 4 3 2 35 35 H 1.09007 * 109.46783 * 175.28611 * 4 3 2 36 36 H 1.08994 * 109.47335 * 55.56616 * 5 4 3 37 37 H 1.09003 * 109.47455 * 175.56902 * 5 4 3 38 38 H 1.08999 * 109.47353 * 295.56228 * 5 4 3 39 39 H 1.08001 * 119.99674 * 179.68604 * 10 9 8 40 40 H 1.08001 * 120.00184 * 0.02562 * 11 10 9 41 41 H 1.07999 * 120.04210 * 0.02562 * 13 12 11 42 42 H 1.08004 * 119.94948 * 179.97438 * 14 13 12 43 43 H 0.96997 * 120.00297 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.94872 * 180.27980 * 25 15 14 45 45 H 1.08001 * 120.04770 * 179.74285 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5666 1.4437 0.1009 5 6 3.9891 0.8585 1.4498 6 6 1.6203 2.1237 -1.2771 7 7 1.9397 1.7561 -2.4836 8 8 1.4440 2.5015 -3.3019 9 6 0.7413 3.4598 -2.6730 10 6 -0.0032 4.5532 -3.2997 11 6 -0.0225 4.6730 -4.6432 12 6 -0.7708 5.7710 -5.2727 13 6 -0.7928 5.8970 -6.6667 14 6 -1.4941 6.9267 -7.2515 15 6 -2.1760 7.8451 -6.4591 16 8 -2.8611 8.8612 -7.0395 17 6 -2.9361 8.8586 -8.3853 18 1 -2.5340 8.0285 -8.9470 19 6 -3.5298 9.9221 -9.0487 20 7 -4.0191 10.9334 -8.3646 21 14 -3.6344 9.9181 -10.9137 22 1 -4.9014 9.2697 -11.3371 23 1 -3.6025 11.3160 -11.4142 24 1 -2.4825 9.1659 -11.4726 25 6 -2.1617 7.7205 -5.0733 26 6 -1.4630 6.6939 -4.4798 27 7 0.8503 3.2168 -1.3740 28 1 -0.3633 -1.0238 0.0902 29 1 -0.3634 0.5899 0.8414 30 1 -0.3633 0.4336 -0.9316 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6192 1.9766 0.8520 34 1 3.9844 0.8393 -0.7043 35 1 3.9355 2.4660 0.0167 36 1 3.5545 -0.1341 1.5674 37 1 5.0760 0.7864 1.4903 38 1 3.6380 1.5064 2.2530 39 1 -0.5370 5.2641 -2.6865 40 1 0.5110 3.9618 -5.2565 41 1 -0.2601 5.1872 -7.2822 42 1 -1.5112 7.0249 -8.3270 43 1 -4.4339 11.6773 -8.8286 44 1 -2.6961 8.4329 -4.4624 45 1 -1.4491 6.6003 -3.4039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273873292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:25 Heat of formation + Delta-G solvation = 57.004694 kcal Electronic energy + Delta-G solvation = -25724.176359 eV Core-core repulsion = 21903.387975 eV Total energy + Delta-G solvation = -3820.788384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.33082 -39.27124 -37.87579 -37.13527 -35.24311 -34.16101 -32.56886 -32.10185 -31.34582 -30.48822 -28.19608 -27.50652 -25.77067 -24.04946 -23.68204 -23.09290 -22.39674 -21.79420 -20.46198 -19.17567 -18.22338 -17.94403 -17.41379 -17.01684 -16.08011 -15.54694 -15.04497 -14.87472 -14.59726 -14.52929 -14.44352 -13.95658 -13.88855 -13.46890 -13.25214 -12.94139 -12.73442 -12.44884 -12.39333 -12.18652 -12.12342 -11.94127 -11.81275 -11.76389 -11.72248 -11.32428 -11.19158 -11.12550 -11.10051 -10.94115 -10.83801 -10.71861 -10.57995 -10.41902 -9.59934 -9.32410 -8.81742 -8.44361 -7.14647 -6.71327 -4.25142 0.51744 1.69832 2.08236 2.30505 2.93371 2.95679 3.00850 3.06043 3.10848 3.54506 3.77300 4.01671 4.43083 4.47578 4.54896 4.66715 4.87608 4.88909 4.93831 4.97309 5.06203 5.09439 5.16798 5.32717 5.37122 5.45021 5.49767 5.53038 5.56113 5.58498 5.68958 5.74362 5.83351 5.85729 5.91885 5.96361 5.98003 6.03469 6.12793 6.35862 6.38193 6.51239 6.70737 6.85036 7.04934 7.15310 7.20395 7.57210 7.73729 8.25698 8.73103 9.39421 10.44919 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037952 B = 0.001686 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.595921 B =16604.697682 C =16757.222148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.004 3.996 4 C -0.117 4.117 5 C -0.152 4.152 6 C 0.182 3.818 7 N -0.397 5.397 8 O 0.065 5.935 9 C 0.240 3.760 10 C -0.173 4.173 11 C 0.024 3.976 12 C -0.199 4.199 13 C -0.032 4.032 14 C -0.242 4.242 15 C 0.167 3.833 16 O -0.159 6.159 17 C -0.392 4.392 18 H 0.098 0.902 19 C 0.042 3.958 20 N -0.849 5.849 21 Si 0.946 3.054 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.198 4.198 26 C -0.041 4.041 27 N -0.496 5.496 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.132 0.868 43 H 0.275 0.725 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.346 -16.708 12.473 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.016 4.016 4 C -0.155 4.155 5 C -0.209 4.209 6 C -0.091 4.091 7 N -0.108 5.108 8 O 0.008 5.992 9 C 0.027 3.973 10 C -0.193 4.193 11 C 0.002 3.998 12 C -0.200 4.200 13 C -0.051 4.051 14 C -0.261 4.261 15 C 0.110 3.890 16 O -0.059 6.059 17 C -0.467 4.467 18 H 0.116 0.884 19 C -0.165 4.165 20 N -0.481 5.481 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.217 4.217 26 C -0.060 4.060 27 N -0.229 5.229 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.173 0.827 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.149 0.851 43 H 0.085 0.915 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.513 -16.872 12.802 23.645 hybrid contribution -0.147 0.227 -1.147 1.179 sum 10.366 -16.645 11.654 22.811 Atomic orbital electron populations 1.21768 0.95377 1.01691 1.02046 1.21664 0.96395 0.94484 1.03059 1.19684 0.96363 0.95394 0.90205 1.21553 0.93211 1.01984 0.98768 1.21822 1.01376 1.01222 0.96502 1.25549 0.95799 0.92588 0.95186 1.74492 1.20018 1.15600 1.00663 1.85417 1.49027 1.30522 1.34195 1.26719 0.92526 0.91653 0.86389 1.20507 1.06764 0.97153 0.94922 1.22281 0.90527 0.93425 0.93610 1.18281 1.08558 0.99909 0.93255 1.20962 0.95189 0.95777 0.93165 1.21102 1.05314 0.98892 1.00809 1.19636 0.89110 0.87978 0.92272 1.83930 1.59486 1.39328 1.23191 1.21494 1.40102 1.06860 0.78274 0.88448 1.25417 0.95702 0.94266 1.01114 1.70018 1.33693 1.07595 1.36764 0.85633 0.79345 0.78353 0.79731 1.19572 1.20005 1.18917 1.20158 1.07312 1.02194 0.92058 1.20895 0.93946 0.92595 0.98532 1.72297 1.20051 1.15346 1.15252 0.92425 0.92284 0.93275 0.91272 0.90310 0.88246 0.91199 0.91667 0.92105 0.92340 0.92406 0.82749 0.86063 0.86730 0.85062 0.91481 0.86007 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.63 37.16 0.36 -0.99 16 2 C -0.12 -0.99 5.25 -26.73 -0.14 -1.13 16 3 C 0.00 0.04 2.35 -91.77 -0.22 -0.18 16 4 C -0.12 -0.98 5.39 -26.74 -0.14 -1.13 16 5 C -0.15 -0.93 9.77 37.15 0.36 -0.57 16 6 C 0.18 2.39 5.72 -156.63 -0.90 1.50 16 7 N -0.40 -5.61 12.14 31.31 0.38 -5.23 16 8 O 0.07 0.92 11.03 16.00 0.18 1.10 16 9 C 0.24 3.35 8.12 -14.23 -0.12 3.24 16 10 C -0.17 -2.22 9.58 -37.50 -0.36 -2.58 16 11 C 0.02 0.31 9.57 -37.20 -0.36 -0.05 16 12 C -0.20 -3.07 5.87 -105.02 -0.62 -3.69 16 13 C -0.03 -0.53 9.78 -39.15 -0.38 -0.91 16 14 C -0.24 -4.73 9.11 -39.47 -0.36 -5.09 16 15 C 0.17 3.68 6.66 -38.90 -0.26 3.42 16 16 O -0.16 -4.19 9.74 0.62 0.01 -4.18 16 17 C -0.39 -10.11 9.44 30.90 0.29 -9.81 16 18 H 0.10 2.29 5.26 -52.49 -0.28 2.02 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.85 -23.24 13.67 55.48 0.76 -22.48 16 21 Si 0.95 18.99 29.55 -169.99 -5.02 13.97 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.20 -3.79 9.97 -39.46 -0.39 -4.18 16 26 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 27 N -0.50 -7.18 11.60 -10.31 -0.12 -7.30 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.55 7.52 -51.93 -0.39 0.16 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.50 6.29 -51.93 -0.33 0.17 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.32 6.28 -51.93 -0.33 0.00 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.16 1.87 6.06 -52.49 -0.32 1.55 16 40 H 0.12 1.35 7.82 -52.49 -0.41 0.94 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.13 2.55 5.68 -52.48 -0.30 2.25 16 43 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 45 H 0.12 1.58 6.16 -52.49 -0.32 1.26 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -28.63 380.79 -7.81 -36.44 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.03 Total: 4.15 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.69 Total: -22.20 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 1.02 Total: -35.01 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.18 Total: -3.09 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.63 -7.81 -36.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273873292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.443 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds