Wall clock time and date at job start Tue Mar 31 2020 15:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46713 * 2 1 4 4 C 1.53001 * 109.46845 * 175.98964 * 3 2 1 5 5 C 1.52990 * 109.47432 * 295.28880 * 4 3 2 6 6 C 1.50700 * 109.47548 * 295.99278 * 3 2 1 7 7 N 1.30106 * 126.14129 * 300.04723 * 6 3 2 8 8 O 1.21282 * 110.59192 * 179.66372 * 7 6 3 9 9 C 1.34441 * 109.64052 * 0.46873 * 8 7 6 10 10 C 1.46373 * 126.72788 * 179.80145 * 9 8 7 11 11 C 1.34895 * 120.00142 * 359.68498 * 10 9 8 12 12 C 1.47036 * 119.99852 * 179.97438 * 11 10 9 13 13 C 1.39986 * 120.10119 * 180.02562 * 12 11 10 14 14 C 1.37624 * 119.89982 * 180.02562 * 13 12 11 15 15 C 1.39150 * 120.10122 * 0.27615 * 14 13 12 16 16 O 1.35606 * 119.89812 * 179.72733 * 15 14 13 17 17 C 1.34787 * 116.99894 * 5.50697 * 16 15 14 18 18 H 1.07995 * 120.00465 * 5.08280 * 17 16 15 19 19 C 1.38685 * 119.99438 * 185.08323 * 17 16 15 20 20 N 1.31530 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99643 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47369 * 90.00351 * 21 19 17 23 23 H 1.48507 * 109.46757 * 210.00177 * 21 19 17 24 24 H 1.48494 * 109.47208 * 329.99830 * 21 19 17 25 25 C 1.39150 * 120.19957 * 359.44580 * 15 14 13 26 26 C 1.37633 * 120.09595 * 0.55362 * 25 15 14 27 27 N 1.32611 * 106.53549 * 359.53990 * 9 8 7 28 28 H 1.09007 * 109.46760 * 185.03618 * 1 2 3 29 29 H 1.09000 * 109.47423 * 305.03516 * 1 2 3 30 30 H 1.08993 * 109.47077 * 65.04195 * 1 2 3 31 31 H 1.09000 * 109.46807 * 240.00070 * 2 1 3 32 32 H 1.08999 * 109.46958 * 120.00108 * 2 1 3 33 33 H 1.09005 * 109.47252 * 55.99817 * 3 2 1 34 34 H 1.08997 * 109.46616 * 55.29108 * 4 3 2 35 35 H 1.09007 * 109.46783 * 175.28611 * 4 3 2 36 36 H 1.08994 * 109.47335 * 55.56616 * 5 4 3 37 37 H 1.09003 * 109.47455 * 175.56902 * 5 4 3 38 38 H 1.08999 * 109.47353 * 295.56228 * 5 4 3 39 39 H 1.08001 * 119.99674 * 179.68604 * 10 9 8 40 40 H 1.08001 * 120.00184 * 0.02562 * 11 10 9 41 41 H 1.07999 * 120.04210 * 0.02562 * 13 12 11 42 42 H 1.08004 * 119.94948 * 179.97438 * 14 13 12 43 43 H 0.96997 * 120.00297 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.94872 * 180.27980 * 25 15 14 45 45 H 1.08001 * 120.04770 * 179.74285 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5666 1.4437 0.1009 5 6 3.9891 0.8585 1.4498 6 6 1.6203 2.1237 -1.2771 7 7 1.9397 1.7561 -2.4836 8 8 1.4440 2.5015 -3.3019 9 6 0.7413 3.4598 -2.6730 10 6 -0.0032 4.5532 -3.2997 11 6 -0.0225 4.6730 -4.6432 12 6 -0.7708 5.7710 -5.2727 13 6 -0.7928 5.8970 -6.6667 14 6 -1.4941 6.9267 -7.2515 15 6 -2.1760 7.8451 -6.4591 16 8 -2.8611 8.8612 -7.0395 17 6 -2.9361 8.8586 -8.3853 18 1 -2.5340 8.0285 -8.9470 19 6 -3.5298 9.9221 -9.0487 20 7 -4.0191 10.9334 -8.3646 21 14 -3.6344 9.9181 -10.9137 22 1 -4.9014 9.2697 -11.3371 23 1 -3.6025 11.3160 -11.4142 24 1 -2.4825 9.1659 -11.4726 25 6 -2.1617 7.7205 -5.0733 26 6 -1.4630 6.6939 -4.4798 27 7 0.8503 3.2168 -1.3740 28 1 -0.3633 -1.0238 0.0902 29 1 -0.3634 0.5899 0.8414 30 1 -0.3633 0.4336 -0.9316 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6192 1.9766 0.8520 34 1 3.9844 0.8393 -0.7043 35 1 3.9355 2.4660 0.0167 36 1 3.5545 -0.1341 1.5674 37 1 5.0760 0.7864 1.4903 38 1 3.6380 1.5064 2.2530 39 1 -0.5370 5.2641 -2.6865 40 1 0.5110 3.9618 -5.2565 41 1 -0.2601 5.1872 -7.2822 42 1 -1.5112 7.0249 -8.3270 43 1 -4.4339 11.6773 -8.8286 44 1 -2.6961 8.4329 -4.4624 45 1 -1.4491 6.6003 -3.4039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273873292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:24 Heat of formation + Delta-G solvation = 41.012535 kcal Electronic energy + Delta-G solvation = -25724.869831 eV Core-core repulsion = 21903.387975 eV Total energy + Delta-G solvation = -3821.481856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -46.42815 -40.83033 -38.70465 -38.60751 -36.33925 -35.34468 -34.29203 -32.75962 -32.52963 -31.94057 -29.54363 -28.26580 -27.50973 -25.28854 -24.67844 -23.89194 -23.65765 -23.00418 -21.60298 -20.35066 -19.68928 -19.04642 -18.87814 -18.31167 -17.29801 -16.49675 -16.37287 -16.08413 -15.90732 -15.60480 -15.53656 -15.27707 -14.93926 -14.68015 -14.59983 -14.18937 -13.83614 -13.55384 -13.45891 -13.40026 -13.05151 -12.98110 -12.95905 -12.79308 -12.66189 -12.58121 -12.37184 -12.22244 -12.13499 -12.12202 -12.05791 -11.72178 -11.64056 -11.32833 -11.21765 -10.89266 -10.24918 -9.86692 -8.62309 -8.51650 -6.17365 -0.63832 0.49701 0.61319 1.12710 1.37073 1.45240 1.54047 1.83267 1.86389 2.16037 2.58965 2.85835 3.03717 3.19369 3.42762 3.65996 3.81855 3.87834 3.94620 4.08254 4.12421 4.25012 4.26977 4.35782 4.44885 4.47441 4.51050 4.63379 4.64274 4.72984 4.80085 4.85534 4.94403 4.95029 5.00444 5.05529 5.10960 5.13611 5.19108 5.19543 5.30064 5.32372 5.35067 5.43080 5.57355 5.66005 5.76979 5.98112 6.12211 6.92945 7.17041 7.70315 8.70517 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037952 B = 0.001686 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.595921 B =16604.697682 C =16757.222148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.001 3.999 4 C -0.112 4.112 5 C -0.148 4.148 6 C 0.183 3.817 7 N -0.408 5.408 8 O 0.063 5.937 9 C 0.233 3.767 10 C -0.145 4.145 11 C 0.023 3.977 12 C -0.170 4.170 13 C -0.031 4.031 14 C -0.250 4.250 15 C 0.131 3.869 16 O -0.221 6.221 17 C -0.415 4.415 18 H 0.108 0.892 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.250 1.250 25 C -0.210 4.210 26 C -0.038 4.038 27 N -0.509 5.509 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.166 0.834 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.126 0.874 43 H 0.275 0.725 44 H 0.119 0.881 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 -20.400 14.183 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.205 4.205 6 C -0.091 4.091 7 N -0.120 5.120 8 O 0.008 5.992 9 C 0.019 3.981 10 C -0.165 4.165 11 C 0.000 4.000 12 C -0.171 4.171 13 C -0.049 4.049 14 C -0.269 4.269 15 C 0.079 3.921 16 O -0.125 6.125 17 C -0.491 4.491 18 H 0.125 0.875 19 C -0.218 4.218 20 N -0.551 5.551 21 Si 0.838 3.162 22 H -0.188 1.188 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.229 4.229 26 C -0.056 4.056 27 N -0.243 5.243 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.143 0.857 43 H 0.084 0.916 44 H 0.137 0.863 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.814 -20.633 14.543 28.309 hybrid contribution -0.534 0.880 -1.178 1.564 sum 12.280 -19.753 13.365 26.825 Atomic orbital electron populations 1.21763 0.95802 1.02442 1.00725 1.21663 0.95908 0.93594 1.03896 1.19929 0.97265 0.95990 0.88761 1.21519 0.92134 1.01401 1.00030 1.21805 1.01930 1.01730 0.95028 1.26172 0.94823 0.92054 0.96024 1.74493 1.20502 1.15908 1.01112 1.85403 1.49012 1.30519 1.34296 1.26886 0.92759 0.91916 0.86518 1.20693 1.04709 0.96061 0.95078 1.22269 0.90784 0.93117 0.93805 1.18628 1.06111 0.99256 0.93081 1.21349 0.94309 0.95205 0.94045 1.21234 1.05630 0.99431 1.00624 1.20221 0.90078 0.88111 0.93716 1.83908 1.63232 1.41971 1.23430 1.21904 1.40811 1.07553 0.78789 0.87495 1.26615 0.95276 0.93697 1.06210 1.70159 1.37136 1.09037 1.38748 0.84582 0.79833 0.78460 0.73366 1.18845 1.19759 1.17382 1.20399 1.07988 1.03319 0.91187 1.21289 0.92589 0.91295 1.00428 1.72307 1.20365 1.15954 1.15627 0.91032 0.91819 0.95949 0.92239 0.87615 0.87645 0.91944 0.92777 0.90953 0.91670 0.91842 0.81656 0.83513 0.82824 0.85658 0.91639 0.86316 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.63 71.98 0.69 -1.62 16 2 C -0.11 -1.57 5.25 30.60 0.16 -1.41 16 3 C 0.00 0.01 2.35 -11.54 -0.03 -0.02 16 4 C -0.11 -1.63 5.39 30.59 0.16 -1.47 16 5 C -0.15 -1.35 9.77 71.98 0.70 -0.65 16 6 C 0.18 4.37 5.72 138.55 0.79 5.17 16 7 N -0.41 -10.62 12.14 -57.88 -0.70 -11.32 16 8 O 0.06 1.61 11.03 67.32 0.74 2.35 16 9 C 0.23 5.73 8.12 86.79 0.70 6.43 16 10 C -0.15 -3.09 9.58 23.62 0.23 -2.87 16 11 C 0.02 0.47 9.57 23.81 0.23 0.70 16 12 C -0.17 -4.63 5.87 -20.12 -0.12 -4.75 16 13 C -0.03 -0.92 9.78 22.55 0.22 -0.70 16 14 C -0.25 -9.82 9.11 22.34 0.20 -9.61 16 15 C 0.13 6.04 6.66 22.71 0.15 6.19 16 16 O -0.22 -12.54 9.74 -20.71 -0.20 -12.74 16 17 C -0.41 -22.84 9.44 67.93 0.64 -22.20 16 18 H 0.11 5.32 5.26 -2.91 -0.02 5.30 16 19 C -0.02 -1.04 5.49 84.84 0.47 -0.58 16 20 N -0.91 -53.93 13.67 21.62 0.30 -53.64 16 21 Si 1.02 40.71 29.55 68.60 2.03 42.74 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 25 C -0.21 -8.13 9.97 22.35 0.22 -7.91 16 26 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 27 N -0.51 -13.36 11.60 -302.53 -3.51 -16.87 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.02 0.45 7.52 -2.39 -0.02 0.43 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.92 6.29 -2.39 -0.02 0.91 16 33 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 36 H 0.07 0.50 6.28 -2.39 -0.02 0.49 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.17 3.20 6.06 -2.91 -0.02 3.18 16 40 H 0.15 2.47 7.82 -2.91 -0.02 2.45 16 41 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.13 5.00 5.68 -2.91 -0.02 4.98 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.16 3.47 6.16 -2.91 -0.02 3.45 16 Total: -1.00 -68.34 380.79 5.31 -63.03 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 1.01 Total: 22.66 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 5.65 Total: -36.21 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.92 Total: -81.83 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.54 Total: -10.39 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -68.34 5.31 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273873292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.044 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds