Wall clock time and date at job start Tue Mar 31 2020 14:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47452 * 2 1 4 4 O 1.33499 * 126.71817 * 269.97961 * 3 2 1 5 5 N 1.20656 * 113.39125 * 180.02562 * 4 3 2 6 6 C 1.30874 * 112.09749 * 359.97438 * 5 4 3 7 7 C 1.48328 * 127.43937 * 180.02562 * 6 5 4 8 8 C 1.39370 * 120.11617 * 144.70212 * 7 6 5 9 9 C 1.38018 * 119.86836 * 179.76910 * 8 7 6 10 10 C 1.38324 * 120.12346 * 0.50342 * 9 8 7 11 11 C 1.38324 * 120.25107 * 359.74652 * 10 9 8 12 12 C 1.38010 * 120.12659 * 0.02562 * 11 10 9 13 13 C 1.37204 * 126.72510 * 89.99428 * 3 2 1 14 14 C 1.47291 * 128.57576 * 359.97438 * 13 3 2 15 15 O 1.21620 * 119.99621 * 269.97214 * 14 13 3 16 16 N 1.34774 * 119.99620 * 89.97543 * 14 13 3 17 17 C 1.46508 * 119.99738 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46978 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46874 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47133 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00015 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99759 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00484 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99772 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47257 * 59.99632 * 24 22 20 26 26 H 1.48499 * 109.47158 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47115 * 299.99760 * 24 22 20 28 28 H 1.08994 * 109.47131 * 300.00244 * 1 2 3 29 29 H 1.09002 * 109.47011 * 59.99922 * 1 2 3 30 30 H 1.08995 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47570 * 239.99600 * 2 1 3 32 32 H 1.08997 * 109.47276 * 119.99674 * 2 1 3 33 33 H 1.07998 * 120.06478 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.93699 * 180.25136 * 9 8 7 35 35 H 1.08000 * 119.87369 * 179.72300 * 10 9 8 36 36 H 1.08004 * 119.93531 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.06553 * 180.02562 * 12 11 10 38 38 H 0.96992 * 120.00336 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.47176 * 300.00575 * 17 16 14 40 40 H 1.09008 * 109.46598 * 60.00227 * 17 16 14 41 41 H 1.08994 * 109.47368 * 300.00230 * 18 17 16 42 42 H 1.08995 * 109.46911 * 60.00836 * 18 17 16 43 43 H 1.08999 * 109.47115 * 300.00680 * 19 18 17 44 44 H 1.09008 * 109.47279 * 60.00284 * 19 18 17 45 45 H 0.96998 * 120.00337 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2989 2.1732 -1.0701 5 7 2.6907 3.2800 -0.7920 6 6 2.7566 3.4683 0.5014 7 6 3.1902 4.6954 1.2130 8 6 2.5802 5.0613 2.4115 9 6 2.9909 6.2015 3.0718 10 6 3.9988 6.9861 2.5409 11 6 4.6042 6.6306 1.3491 12 6 4.2049 5.4900 0.6826 13 6 2.3058 2.1944 1.0997 14 6 2.1806 1.8422 2.5244 15 8 1.1362 2.0489 3.1123 16 7 3.2235 1.2912 3.1764 17 6 3.0991 0.9414 4.5937 18 6 4.4151 0.3368 5.0871 19 6 4.2850 -0.0290 6.5671 20 6 5.5815 -0.6239 7.0533 21 1 6.4147 -0.7308 6.3746 22 6 5.7034 -1.0327 8.3644 23 7 4.6887 -0.9030 9.1908 24 14 7.3107 -1.7695 8.9673 25 1 8.4040 -0.7791 8.7971 26 1 7.1840 -2.1259 10.4033 27 1 7.6216 -2.9901 8.1805 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7898 4.4519 2.8244 34 1 2.5217 6.4839 4.0027 35 1 4.3140 7.8800 3.0587 36 1 5.3910 7.2467 0.9394 37 1 4.6785 5.2131 -0.2476 38 1 4.0563 1.1261 2.7075 39 1 2.8717 1.8378 5.1706 40 1 2.2962 0.2149 4.7195 41 1 4.6420 -0.5596 4.5102 42 1 5.2182 1.0629 4.9613 43 1 4.0578 0.8672 7.1443 44 1 3.4819 -0.7553 6.6926 45 1 4.7747 -1.1903 10.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280565655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:00 Heat of formation + Delta-G solvation = 23.382340 kcal Electronic energy + Delta-G solvation = -26997.730925 eV Core-core repulsion = 23175.484566 eV Total energy + Delta-G solvation = -3822.246359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.06747 -39.63042 -39.16112 -35.54068 -35.08125 -34.42501 -33.34826 -31.43801 -31.18960 -30.63065 -30.38702 -27.10056 -25.08311 -24.56049 -23.41677 -22.89022 -22.41101 -20.90875 -20.56589 -19.79611 -18.07988 -17.77170 -17.32566 -16.49423 -16.43498 -15.71789 -15.55634 -15.27383 -15.03908 -14.75416 -14.49536 -14.30917 -13.84568 -13.66484 -13.56947 -13.51782 -13.14308 -12.93366 -12.32139 -12.11245 -11.91910 -11.87539 -11.79101 -11.56011 -11.40604 -11.21361 -10.91362 -10.80137 -10.74227 -10.64849 -10.26269 -9.92015 -9.63496 -9.47317 -9.18211 -9.17488 -8.93554 -8.84958 -8.40051 -6.04783 -4.08106 0.64189 1.09273 1.17303 1.95283 2.36691 2.59267 3.26549 3.30035 3.35053 3.37110 3.53227 3.71678 4.08043 4.41738 4.56927 4.61034 4.72135 4.77333 4.81235 4.84710 4.93792 4.99325 5.14844 5.26991 5.31071 5.37887 5.44675 5.50785 5.61316 5.64625 5.69024 5.70028 5.80328 5.90668 6.07732 6.18804 6.25379 6.27811 6.33012 6.52384 6.68889 6.73467 6.93341 7.52129 7.59139 7.71253 7.93324 7.94816 8.15684 8.34572 8.98183 9.56309 11.06424 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.002981 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.052141 B = 9389.570874 C =11149.648948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.047 4.047 3 C 0.021 3.979 4 O 0.104 5.896 5 N -0.347 5.347 6 C 0.095 3.905 7 C -0.030 4.030 8 C -0.087 4.087 9 C -0.116 4.116 10 C -0.105 4.105 11 C -0.123 4.123 12 C -0.088 4.088 13 C -0.235 4.235 14 C 0.594 3.406 15 O -0.527 6.527 16 N -0.711 5.711 17 C 0.116 3.884 18 C -0.121 4.121 19 C 0.025 3.975 20 C -0.524 4.524 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.401 0.599 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 9.455 -20.564 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 C -0.043 4.043 4 O 0.039 5.961 5 N -0.050 5.050 6 C -0.065 4.065 7 C -0.031 4.031 8 C -0.106 4.106 9 C -0.134 4.134 10 C -0.123 4.123 11 C -0.141 4.141 12 C -0.107 4.107 13 C -0.242 4.242 14 C 0.377 3.623 15 O -0.404 6.404 16 N -0.360 5.360 17 C -0.006 4.006 18 C -0.159 4.159 19 C -0.013 4.013 20 C -0.562 4.562 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.177 10.292 -21.013 23.964 hybrid contribution 1.227 -0.727 0.925 1.700 sum -3.950 9.565 -20.088 22.597 Atomic orbital electron populations 1.21803 0.92709 1.03210 1.03274 1.20288 0.97395 0.85502 1.05327 1.24630 0.98525 0.96247 0.84873 1.84502 1.61187 1.17381 1.33016 1.73958 1.16968 0.98251 1.15802 1.22942 1.00898 0.94166 0.88544 1.17613 0.98281 0.91990 0.95227 1.21361 0.99052 0.96829 0.93390 1.21146 0.97489 0.94686 1.00094 1.21334 0.95765 0.99519 0.95683 1.21088 1.00377 0.96889 0.95731 1.21164 0.95804 0.94257 0.99506 1.22012 1.11914 0.94682 0.95625 1.16819 0.84086 0.77676 0.83683 1.90832 1.28281 1.53672 1.67606 1.46204 1.15032 1.61883 1.12929 1.21754 1.00434 1.00333 0.78102 1.21903 0.93732 0.99342 1.00945 1.19021 0.97450 0.96931 0.87859 1.21154 0.98579 1.41020 0.95469 0.92701 1.25015 0.96515 0.95887 0.96936 1.69945 1.30547 1.47480 1.05275 0.86650 0.83922 0.79644 0.77731 1.20228 1.21244 1.20229 0.91430 0.91960 0.90794 0.88546 0.88118 0.84996 0.85160 0.85527 0.85427 0.85601 0.76519 0.91417 0.91347 0.92624 0.92634 0.96247 0.96234 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 37.16 0.37 -0.82 16 2 C -0.05 -0.37 6.37 -27.88 -0.18 -0.55 16 3 C 0.02 0.23 6.79 -34.68 -0.24 -0.01 16 4 O 0.10 1.21 11.05 18.64 0.21 1.42 16 5 N -0.35 -4.57 12.05 34.60 0.42 -4.15 16 6 C 0.09 1.28 7.03 -80.22 -0.56 0.71 16 7 C -0.03 -0.39 5.87 -104.90 -0.62 -1.01 16 8 C -0.09 -1.13 9.32 -39.24 -0.37 -1.50 16 9 C -0.12 -1.28 10.03 -39.63 -0.40 -1.67 16 10 C -0.10 -1.00 10.04 -39.52 -0.40 -1.40 16 11 C -0.12 -1.17 10.03 -39.63 -0.40 -1.57 16 12 C -0.09 -0.99 9.78 -39.25 -0.38 -1.37 16 13 C -0.23 -3.10 6.19 -102.69 -0.64 -3.74 16 14 C 0.59 8.87 6.44 -12.58 -0.08 8.79 16 15 O -0.53 -9.52 16.46 5.26 0.09 -9.43 16 16 N -0.71 -10.06 5.55 -61.42 -0.34 -10.40 16 17 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 18 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 19 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 20 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 24 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.13 1.89 6.60 -52.49 -0.35 1.54 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.40 4.85 8.46 -40.82 -0.35 4.51 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -32.38 390.38 -9.20 -41.58 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.57 Total: 1.90 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -4.60 Total: -17.32 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.81 Total: -40.22 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.29 Total: -8.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.38 -9.20 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280565655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.965 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds