Wall clock time and date at job start Tue Mar 31 2020 14:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47452 * 2 1 4 4 O 1.33499 * 126.71817 * 269.97961 * 3 2 1 5 5 N 1.20656 * 113.39125 * 180.02562 * 4 3 2 6 6 C 1.30874 * 112.09749 * 359.97438 * 5 4 3 7 7 C 1.48328 * 127.43937 * 180.02562 * 6 5 4 8 8 C 1.39370 * 120.11617 * 144.70212 * 7 6 5 9 9 C 1.38018 * 119.86836 * 179.76910 * 8 7 6 10 10 C 1.38324 * 120.12346 * 0.50342 * 9 8 7 11 11 C 1.38324 * 120.25107 * 359.74652 * 10 9 8 12 12 C 1.38010 * 120.12659 * 0.02562 * 11 10 9 13 13 C 1.37204 * 126.72510 * 89.99428 * 3 2 1 14 14 C 1.47291 * 128.57576 * 359.97438 * 13 3 2 15 15 O 1.21620 * 119.99621 * 269.97214 * 14 13 3 16 16 N 1.34774 * 119.99620 * 89.97543 * 14 13 3 17 17 C 1.46508 * 119.99738 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46978 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.46874 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47133 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00015 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99759 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00484 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99772 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47257 * 59.99632 * 24 22 20 26 26 H 1.48499 * 109.47158 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47115 * 299.99760 * 24 22 20 28 28 H 1.08994 * 109.47131 * 300.00244 * 1 2 3 29 29 H 1.09002 * 109.47011 * 59.99922 * 1 2 3 30 30 H 1.08995 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47570 * 239.99600 * 2 1 3 32 32 H 1.08997 * 109.47276 * 119.99674 * 2 1 3 33 33 H 1.07998 * 120.06478 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.93699 * 180.25136 * 9 8 7 35 35 H 1.08000 * 119.87369 * 179.72300 * 10 9 8 36 36 H 1.08004 * 119.93531 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.06553 * 180.02562 * 12 11 10 38 38 H 0.96992 * 120.00336 * 359.97438 * 16 14 13 39 39 H 1.08999 * 109.47176 * 300.00575 * 17 16 14 40 40 H 1.09008 * 109.46598 * 60.00227 * 17 16 14 41 41 H 1.08994 * 109.47368 * 300.00230 * 18 17 16 42 42 H 1.08995 * 109.46911 * 60.00836 * 18 17 16 43 43 H 1.08999 * 109.47115 * 300.00680 * 19 18 17 44 44 H 1.09008 * 109.47279 * 60.00284 * 19 18 17 45 45 H 0.96998 * 120.00337 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2989 2.1732 -1.0701 5 7 2.6907 3.2800 -0.7920 6 6 2.7566 3.4683 0.5014 7 6 3.1902 4.6954 1.2130 8 6 2.5802 5.0613 2.4115 9 6 2.9909 6.2015 3.0718 10 6 3.9988 6.9861 2.5409 11 6 4.6042 6.6306 1.3491 12 6 4.2049 5.4900 0.6826 13 6 2.3058 2.1944 1.0997 14 6 2.1806 1.8422 2.5244 15 8 1.1362 2.0489 3.1123 16 7 3.2235 1.2912 3.1764 17 6 3.0991 0.9414 4.5937 18 6 4.4151 0.3368 5.0871 19 6 4.2850 -0.0290 6.5671 20 6 5.5815 -0.6239 7.0533 21 1 6.4147 -0.7308 6.3746 22 6 5.7034 -1.0327 8.3644 23 7 4.6887 -0.9030 9.1908 24 14 7.3107 -1.7695 8.9673 25 1 8.4040 -0.7791 8.7971 26 1 7.1840 -2.1259 10.4033 27 1 7.6216 -2.9901 8.1805 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7898 4.4519 2.8244 34 1 2.5217 6.4839 4.0027 35 1 4.3140 7.8800 3.0587 36 1 5.3910 7.2467 0.9394 37 1 4.6785 5.2131 -0.2476 38 1 4.0563 1.1261 2.7075 39 1 2.8717 1.8378 5.1706 40 1 2.2962 0.2149 4.7195 41 1 4.6420 -0.5596 4.5102 42 1 5.2182 1.0629 4.9613 43 1 4.0578 0.8672 7.1443 44 1 3.4819 -0.7553 6.6926 45 1 4.7747 -1.1903 10.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280565655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:59 Heat of formation + Delta-G solvation = 5.298261 kcal Electronic energy + Delta-G solvation = -26998.515109 eV Core-core repulsion = 23175.484566 eV Total energy + Delta-G solvation = -3823.030543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.04114 -40.83036 -40.06176 -37.04695 -35.91417 -35.37620 -35.18817 -33.08669 -32.06917 -31.57210 -31.28896 -28.80712 -26.38103 -25.36340 -24.76232 -23.88344 -23.42488 -22.36874 -21.79447 -20.87379 -19.12289 -18.82514 -18.48879 -18.19651 -17.41033 -17.05684 -16.74242 -16.45617 -16.24450 -16.02483 -15.67662 -15.24230 -15.05540 -14.71377 -14.47088 -14.44394 -14.24851 -14.00633 -13.79239 -13.65751 -13.52121 -12.91273 -12.72203 -12.60429 -12.57169 -12.43990 -12.35320 -12.18665 -12.00068 -11.76725 -11.68962 -11.58980 -11.33111 -11.14288 -10.59655 -10.53942 -10.25714 -10.02976 -9.71969 -8.18726 -6.30012 -0.25416 0.16625 0.32756 0.99436 1.19790 1.42500 1.44987 1.52842 1.63586 2.14176 2.42935 2.66576 2.77641 3.15202 3.17354 3.61074 3.71916 3.88790 3.94199 4.03943 4.10288 4.16247 4.18350 4.19228 4.25343 4.31980 4.45445 4.52611 4.53345 4.73233 4.85879 4.90612 4.92058 4.93269 4.97968 4.99794 5.15489 5.27093 5.29895 5.36795 5.40724 5.45698 5.51750 5.70815 5.84623 5.88883 6.22438 6.33940 6.86967 6.97180 7.00613 7.39554 8.93032 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.002981 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.052141 B = 9389.570874 C =11149.648948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C 0.043 3.957 4 O 0.110 5.890 5 N -0.358 5.358 6 C 0.087 3.913 7 C -0.051 4.051 8 C -0.109 4.109 9 C -0.125 4.125 10 C -0.101 4.101 11 C -0.117 4.117 12 C -0.095 4.095 13 C -0.262 4.262 14 C 0.604 3.396 15 O -0.563 6.563 16 N -0.699 5.699 17 C 0.130 3.870 18 C -0.102 4.102 19 C 0.025 3.975 20 C -0.542 4.542 21 H 0.065 0.935 22 C -0.001 4.001 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.134 0.866 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.064 0.936 43 H -0.008 1.008 44 H -0.004 1.004 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 9.465 -22.282 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.021 4.021 4 O 0.046 5.954 5 N -0.062 5.062 6 C -0.072 4.072 7 C -0.052 4.052 8 C -0.128 4.128 9 C -0.143 4.143 10 C -0.119 4.119 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.269 4.269 14 C 0.389 3.611 15 O -0.443 6.443 16 N -0.349 5.349 17 C 0.007 3.993 18 C -0.140 4.140 19 C -0.012 4.012 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.199 4.199 23 N -0.574 5.574 24 Si 0.789 3.211 25 H -0.192 1.192 26 H -0.212 1.212 27 H -0.190 1.190 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.152 0.848 38 H 0.250 0.750 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.011 0.989 44 H 0.014 0.986 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.145 10.302 -22.771 25.190 hybrid contribution 0.558 -0.690 1.438 1.690 sum -2.587 9.611 -21.333 23.541 Atomic orbital electron populations 1.21796 0.92532 1.04276 1.02178 1.20540 0.97358 0.83643 1.07066 1.25150 0.96184 0.96915 0.83861 1.84489 1.60830 1.17096 1.32982 1.73934 1.17729 0.98904 1.15605 1.23136 1.00881 0.94488 0.88729 1.17787 0.99386 0.92545 0.95528 1.21282 0.99427 0.97863 0.94250 1.21385 0.98106 0.94285 1.00534 1.21710 0.94592 0.99941 0.95629 1.21492 1.00448 0.96270 0.95298 1.21365 0.95408 0.94664 0.99979 1.21819 1.14506 0.95612 0.94975 1.16926 0.83328 0.76625 0.84267 1.90809 1.29757 1.55046 1.68640 1.45956 1.15610 1.61591 1.11792 1.21369 0.99090 0.99383 0.79432 1.21605 0.94901 1.00289 0.97207 1.18923 0.95916 0.94982 0.91406 1.21639 0.99633 1.40764 0.95981 0.91681 1.25975 1.00227 0.96374 0.97276 1.70090 1.32931 1.48721 1.05642 0.85514 0.79384 0.79161 0.77070 1.19166 1.21161 1.19004 0.94276 0.91286 0.88670 0.85131 0.87988 0.87420 0.84066 0.82468 0.82266 0.84799 0.74995 0.92822 0.92017 0.91091 0.91766 0.98918 0.98586 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.90 71.98 0.71 -1.45 16 2 C -0.05 -0.67 6.37 29.85 0.19 -0.48 16 3 C 0.04 0.89 6.79 25.44 0.17 1.07 16 4 O 0.11 2.45 11.05 76.93 0.85 3.30 16 5 N -0.36 -9.30 12.05 -45.01 -0.54 -9.84 16 6 C 0.09 2.39 7.03 44.50 0.31 2.70 16 7 C -0.05 -1.35 5.87 -20.05 -0.12 -1.47 16 8 C -0.11 -2.94 9.32 22.49 0.21 -2.73 16 9 C -0.13 -2.72 10.03 22.24 0.22 -2.50 16 10 C -0.10 -1.71 10.04 22.31 0.22 -1.49 16 11 C -0.12 -1.97 10.03 22.24 0.22 -1.75 16 12 C -0.10 -2.03 9.78 22.49 0.22 -1.81 16 13 C -0.26 -6.97 6.19 -18.61 -0.12 -7.09 16 14 C 0.60 18.51 6.44 86.62 0.56 19.07 16 15 O -0.56 -21.36 16.46 -4.09 -0.07 -21.43 16 16 N -0.70 -19.81 5.55 -466.48 -2.59 -22.40 16 17 C 0.13 4.45 5.67 86.38 0.49 4.94 16 18 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 19 C 0.03 1.29 4.97 29.85 0.15 1.44 16 20 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 21 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 22 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 23 N -0.93 -56.22 13.29 21.44 0.28 -55.93 16 24 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.11 3.37 6.60 -2.91 -0.02 3.35 16 34 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.41 9.64 8.46 -92.71 -0.78 8.86 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -71.91 390.38 4.49 -67.42 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.22 Total: 18.00 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 4.31 Total: -24.33 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.85 Total: -88.17 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.78 Total: -18.13 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.91 4.49 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280565655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.722 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds