Wall clock time and date at job start Tue Mar 31 2020 14:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47102 * 2 1 4 4 O 1.33490 * 126.72668 * 270.13735 * 3 2 1 5 5 N 1.20660 * 113.39826 * 180.34127 * 4 3 2 6 6 C 1.30872 * 112.09333 * 359.71595 * 5 4 3 7 7 C 1.48331 * 127.44174 * 180.02562 * 6 5 4 8 8 C 1.39376 * 120.11982 * 144.69910 * 7 6 5 9 9 C 1.38008 * 119.86808 * 179.79084 * 8 7 6 10 10 C 1.38318 * 120.12803 * 0.47036 * 9 8 7 11 11 C 1.38331 * 120.24970 * 359.78381 * 10 9 8 12 12 C 1.38004 * 120.12331 * 359.97438 * 11 10 9 13 13 C 1.37214 * 126.71798 * 90.00384 * 3 2 1 14 14 C 1.47278 * 128.58138 * 359.96364 * 13 3 2 15 15 O 1.21619 * 120.00583 * 269.70820 * 14 13 3 16 16 N 1.34784 * 119.99881 * 89.70379 * 14 13 3 17 17 C 1.46494 * 119.99635 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.47325 * 90.00335 * 17 16 14 19 19 C 1.46493 * 119.99864 * 179.72838 * 16 14 13 20 20 C 1.50702 * 109.47427 * 89.99800 * 19 16 14 21 21 H 1.07999 * 119.99972 * 0.02562 * 20 19 16 22 22 C 1.37875 * 119.99945 * 179.97438 * 20 19 16 23 23 N 1.31519 * 120.00264 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99887 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46962 * 59.99982 * 24 22 20 26 26 H 1.48504 * 109.46839 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47142 * 300.00289 * 24 22 20 28 28 H 1.09008 * 109.46882 * 299.99517 * 1 2 3 29 29 H 1.08999 * 109.47535 * 59.99454 * 1 2 3 30 30 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46745 * 240.00230 * 2 1 3 32 32 H 1.08991 * 109.47255 * 120.00481 * 2 1 3 33 33 H 1.08000 * 120.06019 * 0.02562 * 8 7 6 34 34 H 1.08007 * 119.92956 * 180.22978 * 9 8 7 35 35 H 1.08003 * 119.87629 * 179.76426 * 10 9 8 36 36 H 1.08003 * 119.93264 * 180.02562 * 11 10 9 37 37 H 1.08000 * 120.06058 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47006 * 210.00121 * 17 16 14 39 39 H 1.09004 * 109.47665 * 329.99813 * 17 16 14 40 40 H 1.08998 * 109.46465 * 299.99693 * 18 17 16 41 41 H 1.08993 * 109.47021 * 59.99589 * 18 17 16 42 42 H 1.08996 * 109.47055 * 179.97438 * 18 17 16 43 43 H 1.09002 * 109.47192 * 209.99937 * 19 16 14 44 44 H 1.08996 * 109.47342 * 329.99648 * 19 16 14 45 45 H 0.96991 * 120.00123 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2960 2.1742 -1.0699 5 7 2.6942 3.2788 -0.7918 6 6 2.7632 3.4659 0.5016 7 6 3.2045 4.6902 1.2134 8 6 2.5982 5.0587 2.4131 9 6 3.0158 6.1964 3.0732 10 6 4.0273 6.9758 2.5414 11 6 4.6290 6.6177 1.3484 12 6 4.2229 5.4794 0.6822 13 6 2.3059 2.1942 1.0999 14 6 2.1807 1.8420 2.5245 15 8 1.1379 2.0531 3.1138 16 7 3.2218 1.2858 3.1751 17 6 4.4779 1.0320 2.4654 18 6 5.3876 2.2564 2.5850 19 6 3.0992 0.9410 4.5936 20 6 2.5879 -0.4706 4.7252 21 1 2.3759 -1.0527 3.8406 22 6 2.3919 -1.0190 5.9749 23 7 2.6505 -0.3103 7.0521 24 14 1.7587 -2.7690 6.1380 25 1 2.7091 -3.7024 5.4815 26 1 1.6356 -3.1188 7.5760 27 1 0.4289 -2.8770 5.4860 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8057 4.4529 2.8271 34 1 2.5492 6.4809 4.0048 35 1 4.3483 7.8674 3.0595 36 1 5.4186 7.2298 0.9381 37 1 4.6936 5.2006 -0.2490 38 1 4.9744 0.1663 2.9038 39 1 4.2681 0.8365 1.4138 40 1 4.8911 3.1220 2.1466 41 1 5.5975 2.4518 3.6365 42 1 6.3224 2.0673 2.0573 43 1 4.0753 1.0199 5.0724 44 1 2.4019 1.6263 5.0752 45 1 2.5122 -0.6960 7.9312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280678875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:03 Heat of formation + Delta-G solvation = 41.395434 kcal Electronic energy + Delta-G solvation = -28876.995028 eV Core-core repulsion = 25055.529776 eV Total energy + Delta-G solvation = -3821.465252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.72187 -39.31022 -38.81271 -35.33958 -34.71232 -34.12673 -32.77890 -31.02645 -30.50202 -30.19672 -30.03378 -27.36366 -24.83633 -24.25532 -23.17297 -23.02111 -22.59425 -21.84091 -20.08560 -18.75873 -17.67854 -17.25491 -16.81073 -16.48154 -16.09696 -15.63036 -15.08755 -15.02239 -14.62119 -14.38310 -14.11670 -13.73445 -13.47291 -13.43196 -13.38171 -13.05444 -12.88753 -12.61409 -12.30590 -12.04878 -11.76922 -11.69556 -11.51719 -11.33533 -11.28886 -11.14247 -10.95677 -10.86848 -10.74396 -10.60309 -10.36262 -10.18626 -9.72272 -9.41321 -9.08935 -8.98318 -8.59505 -8.47224 -7.77137 -6.08727 -4.13940 0.87862 1.36945 1.48728 2.25945 2.92297 3.08529 3.28700 3.33698 3.36051 3.74765 3.77326 4.06452 4.39445 4.43744 4.86264 4.91431 4.93708 5.01436 5.08304 5.18919 5.22211 5.26516 5.34243 5.38735 5.39588 5.51983 5.62386 5.65372 5.78023 5.80677 5.85786 5.92328 5.99628 6.02241 6.08135 6.22314 6.26450 6.37990 6.46977 6.50082 6.51873 6.89104 6.99360 7.36202 7.44730 7.86490 8.16625 8.27206 8.28285 8.79476 8.95617 9.51095 10.99406 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004751 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.008230 B = 5891.751751 C = 7360.567503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C 0.007 3.993 4 O 0.099 5.901 5 N -0.351 5.351 6 C 0.087 3.913 7 C -0.021 4.021 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.109 4.109 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.213 4.213 14 C 0.587 3.413 15 O -0.527 6.527 16 N -0.580 5.580 17 C 0.109 3.891 18 C -0.171 4.171 19 C 0.247 3.753 20 C -0.528 4.528 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.893 5.893 24 Si 0.897 3.103 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 7.944 -13.627 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.056 4.056 4 O 0.034 5.966 5 N -0.055 5.055 6 C -0.073 4.073 7 C -0.022 4.022 8 C -0.104 4.104 9 C -0.134 4.134 10 C -0.127 4.127 11 C -0.143 4.143 12 C -0.110 4.110 13 C -0.221 4.221 14 C 0.371 3.629 15 O -0.404 6.404 16 N -0.311 5.311 17 C -0.015 4.015 18 C -0.229 4.229 19 C 0.129 3.871 20 C -0.566 4.566 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.532 5.532 24 Si 0.725 3.275 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.737 8.758 -14.156 17.061 hybrid contribution -0.315 -1.251 0.875 1.558 sum 3.422 7.508 -13.281 15.636 Atomic orbital electron populations 1.21782 0.92946 1.02981 1.03090 1.20250 0.97310 0.85628 1.05126 1.24578 0.99891 0.96286 0.84843 1.84450 1.61395 1.17510 1.33210 1.73906 1.17091 0.98597 1.15891 1.22924 1.01331 0.94405 0.88619 1.17590 0.97748 0.91818 0.95006 1.21428 0.99123 0.96570 0.93309 1.21125 0.97440 0.94770 1.00046 1.21276 0.96081 0.99534 0.95813 1.21034 1.00469 0.96958 0.95813 1.21137 0.95984 0.94396 0.99519 1.22295 1.09325 0.93993 0.96462 1.16767 0.84319 0.78566 0.83265 1.90800 1.27931 1.54468 1.67183 1.48207 1.10942 1.58441 1.13471 1.21396 0.85512 0.98228 0.96396 1.22251 0.99246 0.98867 1.02587 1.19339 0.97998 0.96351 0.73430 1.21342 1.44725 0.98166 0.92401 0.92457 1.24915 0.95310 0.98088 0.95593 1.69915 1.48413 1.36990 0.97888 0.86575 0.79546 0.84363 0.77052 1.20222 1.21169 1.20117 0.91257 0.92295 0.91047 0.89039 0.87858 0.84794 0.85306 0.85777 0.85672 0.85762 0.89689 0.92209 0.92634 0.91984 0.92321 0.94705 0.93737 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.04 -0.56 6.37 -27.88 -0.18 -0.74 16 3 C 0.01 0.10 6.47 -34.68 -0.22 -0.12 16 4 O 0.10 1.47 11.05 18.66 0.21 1.68 16 5 N -0.35 -5.59 12.05 34.60 0.42 -5.18 16 6 C 0.09 1.44 6.57 -80.22 -0.53 0.91 16 7 C -0.02 -0.32 4.26 -104.90 -0.45 -0.77 16 8 C -0.09 -1.34 9.32 -39.24 -0.37 -1.71 16 9 C -0.12 -1.52 10.03 -39.64 -0.40 -1.91 16 10 C -0.11 -1.21 10.04 -39.52 -0.40 -1.60 16 11 C -0.12 -1.38 10.03 -39.63 -0.40 -1.77 16 12 C -0.09 -1.19 9.75 -39.25 -0.38 -1.57 16 13 C -0.21 -3.76 4.43 -102.69 -0.45 -4.21 16 14 C 0.59 12.32 6.30 -12.58 -0.08 12.24 16 15 O -0.53 -13.06 16.04 5.26 0.08 -12.98 16 16 N -0.58 -12.13 2.46 -176.39 -0.43 -12.57 16 17 C 0.11 1.84 5.94 -4.04 -0.02 1.82 16 18 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 19 C 0.25 6.26 5.16 -5.20 -0.03 6.23 16 20 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 21 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 24 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 33 H 0.13 2.43 6.60 -52.49 -0.35 2.08 16 34 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 39 H 0.06 0.92 6.64 -51.93 -0.34 0.58 16 40 H 0.05 0.87 5.87 -51.93 -0.30 0.56 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 44 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -31.77 383.37 -8.22 -39.99 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.41 Total: 2.12 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.57 Total: -9.87 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.72 Total: -42.84 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.29 Total: -11.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.77 -8.22 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280678875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.385 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds