Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47102 * 2 1 4 4 O 1.33490 * 126.72668 * 270.13735 * 3 2 1 5 5 N 1.20660 * 113.39826 * 180.34127 * 4 3 2 6 6 C 1.30872 * 112.09333 * 359.71595 * 5 4 3 7 7 C 1.48331 * 127.44174 * 180.02562 * 6 5 4 8 8 C 1.39376 * 120.11982 * 144.69910 * 7 6 5 9 9 C 1.38008 * 119.86808 * 179.79084 * 8 7 6 10 10 C 1.38318 * 120.12803 * 0.47036 * 9 8 7 11 11 C 1.38331 * 120.24970 * 359.78381 * 10 9 8 12 12 C 1.38004 * 120.12331 * 359.97438 * 11 10 9 13 13 C 1.37214 * 126.71798 * 90.00384 * 3 2 1 14 14 C 1.47278 * 128.58138 * 359.96364 * 13 3 2 15 15 O 1.21619 * 120.00583 * 269.70820 * 14 13 3 16 16 N 1.34784 * 119.99881 * 89.70379 * 14 13 3 17 17 C 1.46494 * 119.99635 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.47325 * 90.00335 * 17 16 14 19 19 C 1.46493 * 119.99864 * 179.72838 * 16 14 13 20 20 C 1.50702 * 109.47427 * 89.99800 * 19 16 14 21 21 H 1.07999 * 119.99972 * 0.02562 * 20 19 16 22 22 C 1.37875 * 119.99945 * 179.97438 * 20 19 16 23 23 N 1.31519 * 120.00264 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99887 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46962 * 59.99982 * 24 22 20 26 26 H 1.48504 * 109.46839 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47142 * 300.00289 * 24 22 20 28 28 H 1.09008 * 109.46882 * 299.99517 * 1 2 3 29 29 H 1.08999 * 109.47535 * 59.99454 * 1 2 3 30 30 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46745 * 240.00230 * 2 1 3 32 32 H 1.08991 * 109.47255 * 120.00481 * 2 1 3 33 33 H 1.08000 * 120.06019 * 0.02562 * 8 7 6 34 34 H 1.08007 * 119.92956 * 180.22978 * 9 8 7 35 35 H 1.08003 * 119.87629 * 179.76426 * 10 9 8 36 36 H 1.08003 * 119.93264 * 180.02562 * 11 10 9 37 37 H 1.08000 * 120.06058 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47006 * 210.00121 * 17 16 14 39 39 H 1.09004 * 109.47665 * 329.99813 * 17 16 14 40 40 H 1.08998 * 109.46465 * 299.99693 * 18 17 16 41 41 H 1.08993 * 109.47021 * 59.99589 * 18 17 16 42 42 H 1.08996 * 109.47055 * 179.97438 * 18 17 16 43 43 H 1.09002 * 109.47192 * 209.99937 * 19 16 14 44 44 H 1.08996 * 109.47342 * 329.99648 * 19 16 14 45 45 H 0.96991 * 120.00123 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2960 2.1742 -1.0699 5 7 2.6942 3.2788 -0.7918 6 6 2.7632 3.4659 0.5016 7 6 3.2045 4.6902 1.2134 8 6 2.5982 5.0587 2.4131 9 6 3.0158 6.1964 3.0732 10 6 4.0273 6.9758 2.5414 11 6 4.6290 6.6177 1.3484 12 6 4.2229 5.4794 0.6822 13 6 2.3059 2.1942 1.0999 14 6 2.1807 1.8420 2.5245 15 8 1.1379 2.0531 3.1138 16 7 3.2218 1.2858 3.1751 17 6 4.4779 1.0320 2.4654 18 6 5.3876 2.2564 2.5850 19 6 3.0992 0.9410 4.5936 20 6 2.5879 -0.4706 4.7252 21 1 2.3759 -1.0527 3.8406 22 6 2.3919 -1.0190 5.9749 23 7 2.6505 -0.3103 7.0521 24 14 1.7587 -2.7690 6.1380 25 1 2.7091 -3.7024 5.4815 26 1 1.6356 -3.1188 7.5760 27 1 0.4289 -2.8770 5.4860 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8057 4.4529 2.8271 34 1 2.5492 6.4809 4.0048 35 1 4.3483 7.8674 3.0595 36 1 5.4186 7.2298 0.9381 37 1 4.6936 5.2006 -0.2490 38 1 4.9744 0.1663 2.9038 39 1 4.2681 0.8365 1.4138 40 1 4.8911 3.1220 2.1466 41 1 5.5975 2.4518 3.6365 42 1 6.3224 2.0673 2.0573 43 1 4.0753 1.0199 5.0724 44 1 2.4019 1.6263 5.0752 45 1 2.5122 -0.6960 7.9312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280678875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = 24.513298 kcal Electronic energy + Delta-G solvation = -28877.727092 eV Core-core repulsion = 25055.529776 eV Total energy + Delta-G solvation = -3822.197317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.98372 -40.80804 -40.02709 -37.06348 -35.89721 -35.36007 -34.78352 -32.06160 -31.73886 -31.62811 -31.24018 -29.24119 -26.41429 -25.34596 -24.80294 -24.33636 -23.70025 -23.16792 -21.29926 -20.24737 -18.98238 -18.61746 -18.47577 -18.07060 -17.46143 -17.23489 -16.44170 -16.26701 -16.09053 -15.76933 -15.36923 -15.08294 -14.76332 -14.67185 -14.46331 -14.43818 -14.19576 -13.98744 -13.74756 -13.58378 -13.32129 -13.15749 -12.88516 -12.71649 -12.58966 -12.56613 -12.33115 -12.20475 -12.14450 -12.03164 -11.94141 -11.75496 -11.54301 -11.09367 -10.63443 -10.45551 -10.00415 -9.66532 -9.57640 -8.21485 -6.36012 -0.21844 0.22454 0.35307 1.05119 1.38417 1.42949 1.44509 1.50783 1.70054 2.23963 2.42420 2.69740 2.80999 3.09174 3.22226 3.55692 3.80300 3.91511 3.96958 4.01262 4.06683 4.16357 4.18710 4.26241 4.31034 4.33620 4.47602 4.49816 4.55913 4.72093 4.81415 4.85806 4.89037 4.91238 4.98452 5.00195 5.01267 5.17281 5.25451 5.26849 5.39723 5.44928 5.47859 5.53635 5.78590 5.92030 6.04052 6.56982 6.71470 7.03201 7.17291 7.36682 8.86154 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004751 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.008230 B = 5891.751751 C = 7360.567503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.030 3.970 4 O 0.112 5.888 5 N -0.354 5.354 6 C 0.088 3.912 7 C -0.042 4.042 8 C -0.113 4.113 9 C -0.126 4.126 10 C -0.099 4.099 11 C -0.114 4.114 12 C -0.093 4.093 13 C -0.246 4.246 14 C 0.594 3.406 15 O -0.579 6.579 16 N -0.582 5.582 17 C 0.105 3.895 18 C -0.163 4.163 19 C 0.265 3.735 20 C -0.541 4.541 21 H 0.059 0.941 22 C 0.011 3.989 23 N -0.928 5.928 24 Si 0.966 3.034 25 H -0.259 1.259 26 H -0.281 1.281 27 H -0.275 1.275 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.026 0.974 44 H -0.001 1.001 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 7.728 -16.057 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.034 4.034 4 O 0.048 5.952 5 N -0.058 5.058 6 C -0.071 4.071 7 C -0.043 4.043 8 C -0.133 4.133 9 C -0.144 4.144 10 C -0.117 4.117 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.253 4.253 14 C 0.380 3.620 15 O -0.459 6.459 16 N -0.312 5.312 17 C -0.017 4.017 18 C -0.221 4.221 19 C 0.145 3.855 20 C -0.580 4.580 21 H 0.077 0.923 22 C -0.188 4.188 23 N -0.568 5.568 24 Si 0.790 3.210 25 H -0.183 1.183 26 H -0.207 1.207 27 H -0.201 1.201 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.017 0.983 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.510 8.545 -16.629 19.491 hybrid contribution -0.841 -1.084 1.620 2.123 sum 4.669 7.461 -15.008 17.399 Atomic orbital electron populations 1.21772 0.92629 1.04128 1.01984 1.20453 0.97434 0.84058 1.06462 1.24975 0.97545 0.96851 0.83993 1.84452 1.60931 1.17213 1.32623 1.73877 1.17627 0.98974 1.15298 1.23099 1.00936 0.94405 0.88692 1.17708 0.99186 0.92311 0.95144 1.21253 0.99537 0.97851 0.94611 1.21330 0.98341 0.94294 1.00388 1.21683 0.94407 0.99827 0.95742 1.21498 1.00407 0.96108 0.95098 1.21356 0.95132 0.94650 1.00035 1.21911 1.12739 0.95788 0.94911 1.17068 0.83242 0.77205 0.84488 1.90755 1.29989 1.56398 1.68808 1.48148 1.12660 1.58269 1.12072 1.21637 0.83938 0.99225 0.96908 1.22176 1.00162 0.97651 1.02092 1.18800 0.95998 0.94837 0.75902 1.21617 1.44847 0.98787 0.92711 0.92308 1.25831 0.95301 1.02557 0.95152 1.70047 1.49325 1.38971 0.98425 0.85489 0.79030 0.79206 0.77257 1.18298 1.20668 1.20052 0.95106 0.90601 0.88810 0.84650 0.89428 0.88742 0.84558 0.82182 0.81788 0.84496 0.89615 0.90209 0.93173 0.93435 0.88903 0.95651 0.98275 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.89 71.98 0.71 -2.74 16 2 C -0.05 -1.08 6.37 29.85 0.19 -0.89 16 3 C 0.03 0.88 6.47 25.44 0.16 1.04 16 4 O 0.11 3.14 11.05 77.01 0.85 3.99 16 5 N -0.35 -10.92 12.05 -45.00 -0.54 -11.47 16 6 C 0.09 2.96 6.57 44.51 0.29 3.25 16 7 C -0.04 -1.33 4.26 -20.05 -0.09 -1.41 16 8 C -0.11 -3.80 9.32 22.49 0.21 -3.59 16 9 C -0.13 -3.33 10.03 22.23 0.22 -3.11 16 10 C -0.10 -1.94 10.04 22.31 0.22 -1.72 16 11 C -0.11 -2.13 10.03 22.24 0.22 -1.91 16 12 C -0.09 -2.24 9.75 22.49 0.22 -2.02 16 13 C -0.25 -8.92 4.43 -18.61 -0.08 -9.00 16 14 C 0.59 26.55 6.30 86.62 0.55 27.09 16 15 O -0.58 -31.33 16.04 -4.09 -0.07 -31.39 16 16 N -0.58 -25.62 2.46 -830.21 -2.04 -27.66 16 17 C 0.11 3.57 5.94 86.38 0.51 4.09 16 18 C -0.16 -4.83 10.24 71.98 0.74 -4.09 16 19 C 0.27 14.28 5.16 85.64 0.44 14.73 16 20 C -0.54 -30.45 9.39 25.60 0.24 -30.21 16 21 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 22 C 0.01 0.61 5.46 84.65 0.46 1.07 16 23 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 24 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 33 H 0.09 3.88 6.60 -2.91 -0.02 3.86 16 34 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.09 2.88 8.07 -2.39 -0.02 2.86 16 39 H 0.08 2.38 6.64 -2.38 -0.02 2.37 16 40 H 0.05 1.55 5.87 -2.39 -0.01 1.54 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 44 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 45 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -74.25 383.37 6.74 -67.51 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.99 Total: 17.81 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.23 Total: -9.42 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -2.30 Total: -94.25 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: 0.78 Total: -27.40 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -74.25 6.74 -67.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280678875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.023 kcal (2) G-P(sol) polarization free energy of solvation -74.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds