Wall clock time and date at job start Tue Mar 31 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47319 * 2 1 4 4 O 1.33497 * 126.72082 * 270.13458 * 3 2 1 5 5 N 1.20656 * 113.39147 * 180.33911 * 4 3 2 6 6 C 1.30873 * 112.09822 * 359.71733 * 5 4 3 7 7 C 1.48323 * 127.44360 * 180.02562 * 6 5 4 8 8 C 1.39371 * 120.12226 * 144.70058 * 7 6 5 9 9 C 1.38007 * 119.87526 * 179.79470 * 8 7 6 10 10 C 1.38330 * 120.12462 * 0.46070 * 9 8 7 11 11 C 1.38326 * 120.24966 * 359.79029 * 10 9 8 12 12 C 1.38012 * 120.12264 * 359.97438 * 11 10 9 13 13 C 1.37209 * 126.72142 * 89.99869 * 3 2 1 14 14 C 1.47279 * 128.57657 * 359.96933 * 13 3 2 15 15 O 1.21622 * 119.99925 * 269.69993 * 14 13 3 16 16 N 1.34775 * 120.00313 * 89.70332 * 14 13 3 17 17 C 1.46500 * 120.00366 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47175 * 34.99887 * 17 16 14 19 19 C 1.50706 * 109.46949 * 154.99861 * 17 16 14 20 20 H 1.07995 * 120.00167 * 359.72205 * 19 17 16 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 17 16 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.52997 * 109.47204 * 274.99782 * 17 16 14 28 28 C 1.52996 * 109.46894 * 64.99698 * 27 17 16 29 29 H 1.09008 * 109.46875 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47249 * 300.00085 * 1 2 3 32 32 H 1.09001 * 109.47249 * 239.99915 * 2 1 3 33 33 H 1.08994 * 109.46960 * 120.00246 * 2 1 3 34 34 H 1.08007 * 120.06132 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.94085 * 180.23360 * 9 8 7 36 36 H 1.07999 * 119.87587 * 179.76794 * 10 9 8 37 37 H 1.08000 * 119.94027 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.06163 * 180.02562 * 12 11 10 39 39 H 0.97001 * 119.99752 * 359.97438 * 16 14 13 40 40 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 41 41 H 1.08994 * 109.47510 * 185.00146 * 27 17 16 42 42 H 1.09001 * 109.47096 * 305.00009 * 27 17 16 43 43 H 1.09004 * 109.47017 * 180.02562 * 28 27 17 44 44 H 1.08998 * 109.47867 * 299.99927 * 28 27 17 45 45 H 1.08993 * 109.47122 * 60.00537 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2961 2.1742 -1.0701 5 7 2.6943 3.2786 -0.7919 6 6 2.7632 3.4659 0.5015 7 6 3.2045 4.6901 1.2132 8 6 2.5983 5.0587 2.4128 9 6 3.0157 6.1965 3.0729 10 6 4.0274 6.9759 2.5412 11 6 4.6291 6.6177 1.3483 12 6 4.2230 5.4794 0.6820 13 6 2.3059 2.1943 1.0998 14 6 2.1806 1.8421 2.5244 15 8 1.1379 2.0532 3.1136 16 7 3.2216 1.2859 3.1751 17 6 3.0972 0.9360 4.5923 18 1 2.0811 0.5980 4.7953 19 6 4.0693 -0.1666 4.9247 20 1 4.7120 -0.5698 4.1561 21 6 4.1345 -0.6641 6.2089 22 7 3.3481 -0.1768 7.1436 23 14 5.3399 -2.0303 6.6211 24 1 6.7241 -1.5694 6.3443 25 1 5.2137 -2.3849 8.0576 26 1 5.0397 -3.2231 5.7891 27 6 3.4069 2.1646 5.4499 28 6 2.3459 3.2390 5.2035 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8052 4.4534 2.8266 35 1 2.5493 6.4810 4.0045 36 1 4.3484 7.8675 3.0592 37 1 5.4182 7.2301 0.9374 38 1 4.6938 5.2005 -0.2492 39 1 4.0532 1.1171 2.7051 40 1 3.3937 -0.5271 8.0470 41 1 3.4015 1.8834 6.5030 42 1 4.3887 2.5557 5.1833 43 1 2.5667 4.1145 5.8142 44 1 2.3512 3.5204 4.1505 45 1 1.3641 2.8480 5.4702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281433924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:13 Heat of formation + Delta-G solvation = 35.304926 kcal Electronic energy + Delta-G solvation = -28658.164349 eV Core-core repulsion = 24836.434992 eV Total energy + Delta-G solvation = -3821.729357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.73923 -39.30435 -38.79069 -35.23405 -34.68563 -34.10273 -32.41068 -31.23403 -30.98005 -30.27889 -30.01686 -27.16214 -24.83038 -24.27079 -23.11853 -22.77357 -22.45634 -20.56552 -19.87114 -19.37843 -17.90715 -17.54831 -17.14304 -16.36870 -15.89942 -15.45299 -15.13322 -15.00235 -14.68398 -14.43382 -14.11781 -13.88013 -13.45776 -13.37977 -13.11905 -12.93664 -12.68132 -12.63853 -12.19949 -11.71089 -11.58534 -11.53176 -11.32464 -11.30359 -11.16192 -11.07507 -10.94136 -10.82315 -10.45884 -10.37409 -10.17225 -9.67118 -9.41879 -9.23085 -9.08421 -8.92169 -8.59050 -8.53624 -7.94216 -6.16903 -4.26671 0.89564 1.40177 1.45264 2.25238 2.88500 3.06319 3.22606 3.28367 3.29417 3.77028 3.82289 4.15230 4.33651 4.43892 4.88063 4.94589 4.99070 5.04433 5.11581 5.13107 5.15592 5.29130 5.35753 5.45335 5.53220 5.65983 5.77560 5.80170 5.93047 5.95276 6.02346 6.18286 6.35089 6.39374 6.42901 6.51270 6.52488 6.61144 6.91653 7.02471 7.14021 7.28092 7.34276 7.56479 7.66577 7.83328 8.12112 8.25154 8.54445 8.69395 8.97557 9.40424 10.88279 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010007 B = 0.004791 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.264936 B = 5842.972044 C = 7564.523710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C 0.010 3.990 4 O 0.099 5.901 5 N -0.351 5.351 6 C 0.088 3.912 7 C -0.026 4.026 8 C -0.085 4.085 9 C -0.115 4.115 10 C -0.107 4.107 11 C -0.125 4.125 12 C -0.090 4.090 13 C -0.223 4.223 14 C 0.583 3.417 15 O -0.534 6.534 16 N -0.692 5.692 17 C 0.271 3.729 18 H 0.052 0.948 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.069 3.931 22 N -0.881 5.881 23 Si 0.901 3.099 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.126 4.126 28 C -0.150 4.150 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.390 0.610 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.031 0.969 43 H 0.023 0.977 44 H 0.050 0.950 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 7.237 -12.406 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.053 4.053 4 O 0.035 5.965 5 N -0.055 5.055 6 C -0.071 4.071 7 C -0.027 4.027 8 C -0.104 4.104 9 C -0.133 4.133 10 C -0.126 4.126 11 C -0.143 4.143 12 C -0.110 4.110 13 C -0.231 4.231 14 C 0.366 3.634 15 O -0.412 6.412 16 N -0.338 5.338 17 C 0.170 3.830 18 H 0.069 0.931 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.135 4.135 22 N -0.518 5.518 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.165 4.165 28 C -0.207 4.207 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.222 0.778 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.777 8.074 -12.818 15.169 hybrid contribution 1.052 -1.028 0.778 1.664 sum 0.276 7.046 -12.040 13.953 Atomic orbital electron populations 1.21788 0.92978 1.02947 1.03127 1.20248 0.97208 0.85648 1.05213 1.24592 0.99528 0.96234 0.84901 1.84458 1.61332 1.17533 1.33215 1.73912 1.17103 0.98556 1.15927 1.22960 1.01130 0.94427 0.88611 1.17616 0.98006 0.91944 0.95101 1.21522 0.99376 0.96468 0.93071 1.21112 0.97456 0.94770 0.99976 1.21279 0.96014 0.99541 0.95760 1.21032 1.00474 0.96994 0.95846 1.21142 0.95913 0.94383 0.99515 1.22368 1.10075 0.94109 0.96540 1.16784 0.84870 0.78716 0.83075 1.90801 1.28701 1.54549 1.67198 1.46538 1.13807 1.59343 1.14135 1.18873 0.98615 0.92322 0.73192 0.93056 1.21161 1.21805 1.18924 0.95530 0.92118 1.24859 0.95778 0.96832 0.96001 1.69876 1.37701 1.41665 1.02582 0.86524 0.81258 0.81982 0.77447 1.20163 1.21100 1.20154 1.21914 0.95503 0.94660 1.04438 1.22078 1.00295 0.98083 1.00206 0.92240 0.91040 0.91326 0.88959 0.87875 0.84267 0.85353 0.85782 0.85675 0.85781 0.77751 0.92447 0.88203 0.94996 0.95764 0.93160 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 37.16 0.37 -1.27 16 2 C -0.04 -0.51 6.37 -27.88 -0.18 -0.69 16 3 C 0.01 0.15 6.79 -34.68 -0.24 -0.08 16 4 O 0.10 1.45 11.05 18.64 0.21 1.65 16 5 N -0.35 -5.60 12.05 34.60 0.42 -5.18 16 6 C 0.09 1.47 7.03 -80.22 -0.56 0.91 16 7 C -0.03 -0.41 5.87 -104.91 -0.62 -1.02 16 8 C -0.09 -1.36 8.07 -39.24 -0.32 -1.67 16 9 C -0.12 -1.55 10.03 -39.63 -0.40 -1.95 16 10 C -0.11 -1.25 10.04 -39.52 -0.40 -1.65 16 11 C -0.13 -1.46 10.03 -39.63 -0.40 -1.85 16 12 C -0.09 -1.23 9.78 -39.24 -0.38 -1.61 16 13 C -0.22 -3.81 6.19 -102.69 -0.64 -4.44 16 14 C 0.58 11.44 5.14 -12.59 -0.06 11.38 16 15 O -0.53 -11.96 13.72 5.26 0.07 -11.89 16 16 N -0.69 -14.06 5.02 -56.06 -0.28 -14.34 16 17 C 0.27 6.54 2.24 -69.08 -0.15 6.38 16 18 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 19 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 22 N -0.88 -23.91 11.29 55.43 0.63 -23.29 16 23 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 27 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 28 C -0.15 -3.18 8.51 37.16 0.32 -2.87 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.14 2.49 5.04 -52.48 -0.26 2.22 16 35 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.39 7.26 8.52 -40.82 -0.35 6.91 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 1.01 2.32 -51.93 -0.12 0.89 16 45 H 0.05 1.13 7.84 -51.93 -0.41 0.73 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -29.22 371.93 -8.61 -37.83 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.03 Total: 10.35 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -4.20 Total: -15.80 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.76 Total: -42.81 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.28 Total: -10.24 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.22 -8.61 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281433924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.134 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds