Wall clock time and date at job start Tue Mar 31 2020 14:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47319 * 2 1 4 4 O 1.33497 * 126.72082 * 270.13458 * 3 2 1 5 5 N 1.20656 * 113.39147 * 180.33911 * 4 3 2 6 6 C 1.30873 * 112.09822 * 359.71733 * 5 4 3 7 7 C 1.48323 * 127.44360 * 180.02562 * 6 5 4 8 8 C 1.39371 * 120.12226 * 144.70058 * 7 6 5 9 9 C 1.38007 * 119.87526 * 179.79470 * 8 7 6 10 10 C 1.38330 * 120.12462 * 0.46070 * 9 8 7 11 11 C 1.38326 * 120.24966 * 359.79029 * 10 9 8 12 12 C 1.38012 * 120.12264 * 359.97438 * 11 10 9 13 13 C 1.37209 * 126.72142 * 89.99869 * 3 2 1 14 14 C 1.47279 * 128.57657 * 359.96933 * 13 3 2 15 15 O 1.21622 * 119.99925 * 269.69993 * 14 13 3 16 16 N 1.34775 * 120.00313 * 89.70332 * 14 13 3 17 17 C 1.46500 * 120.00366 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47175 * 34.99887 * 17 16 14 19 19 C 1.50706 * 109.46949 * 154.99861 * 17 16 14 20 20 H 1.07995 * 120.00167 * 359.72205 * 19 17 16 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 17 16 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.52997 * 109.47204 * 274.99782 * 17 16 14 28 28 C 1.52996 * 109.46894 * 64.99698 * 27 17 16 29 29 H 1.09008 * 109.46875 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47249 * 300.00085 * 1 2 3 32 32 H 1.09001 * 109.47249 * 239.99915 * 2 1 3 33 33 H 1.08994 * 109.46960 * 120.00246 * 2 1 3 34 34 H 1.08007 * 120.06132 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.94085 * 180.23360 * 9 8 7 36 36 H 1.07999 * 119.87587 * 179.76794 * 10 9 8 37 37 H 1.08000 * 119.94027 * 179.97438 * 11 10 9 38 38 H 1.08006 * 120.06163 * 180.02562 * 12 11 10 39 39 H 0.97001 * 119.99752 * 359.97438 * 16 14 13 40 40 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 41 41 H 1.08994 * 109.47510 * 185.00146 * 27 17 16 42 42 H 1.09001 * 109.47096 * 305.00009 * 27 17 16 43 43 H 1.09004 * 109.47017 * 180.02562 * 28 27 17 44 44 H 1.08998 * 109.47867 * 299.99927 * 28 27 17 45 45 H 1.08993 * 109.47122 * 60.00537 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2961 2.1742 -1.0701 5 7 2.6943 3.2786 -0.7919 6 6 2.7632 3.4659 0.5015 7 6 3.2045 4.6901 1.2132 8 6 2.5983 5.0587 2.4128 9 6 3.0157 6.1965 3.0729 10 6 4.0274 6.9759 2.5412 11 6 4.6291 6.6177 1.3483 12 6 4.2230 5.4794 0.6820 13 6 2.3059 2.1943 1.0998 14 6 2.1806 1.8421 2.5244 15 8 1.1379 2.0532 3.1136 16 7 3.2216 1.2859 3.1751 17 6 3.0972 0.9360 4.5923 18 1 2.0811 0.5980 4.7953 19 6 4.0693 -0.1666 4.9247 20 1 4.7120 -0.5698 4.1561 21 6 4.1345 -0.6641 6.2089 22 7 3.3481 -0.1768 7.1436 23 14 5.3399 -2.0303 6.6211 24 1 6.7241 -1.5694 6.3443 25 1 5.2137 -2.3849 8.0576 26 1 5.0397 -3.2231 5.7891 27 6 3.4069 2.1646 5.4499 28 6 2.3459 3.2390 5.2035 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8052 4.4534 2.8266 35 1 2.5493 6.4810 4.0045 36 1 4.3484 7.8675 3.0592 37 1 5.4182 7.2301 0.9374 38 1 4.6938 5.2005 -0.2492 39 1 4.0532 1.1171 2.7051 40 1 3.3937 -0.5271 8.0470 41 1 3.4015 1.8834 6.5030 42 1 4.3887 2.5557 5.1833 43 1 2.5667 4.1145 5.8142 44 1 2.3512 3.5204 4.1505 45 1 1.3641 2.8480 5.4702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281433924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:12 Heat of formation + Delta-G solvation = 19.679744 kcal Electronic energy + Delta-G solvation = -28658.841907 eV Core-core repulsion = 24836.434992 eV Total energy + Delta-G solvation = -3822.406915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.97541 -40.80039 -39.99634 -37.02170 -35.84237 -35.30067 -34.29199 -32.90229 -32.07230 -31.42456 -31.20165 -29.04032 -26.28642 -25.31481 -24.80967 -23.99408 -23.53892 -22.05599 -21.40159 -20.90112 -19.41161 -18.83034 -18.33163 -17.79190 -17.42497 -17.16242 -16.50837 -16.30871 -16.00971 -15.82391 -15.35745 -15.14313 -14.71436 -14.60763 -14.47482 -14.36564 -13.99666 -13.81707 -13.63254 -13.45047 -13.16837 -12.95289 -12.84373 -12.66081 -12.58189 -12.34384 -12.24332 -12.16677 -11.99386 -11.94507 -11.61566 -11.45120 -11.09786 -11.05847 -10.53287 -10.49872 -9.96353 -9.74584 -9.66148 -8.15805 -6.33053 -0.20751 0.23465 0.37323 1.05645 1.44993 1.46259 1.47685 1.54911 1.73897 2.33971 2.51790 2.72996 2.88329 3.13908 3.24491 3.78074 3.84126 3.92792 3.98513 4.08330 4.18269 4.20962 4.28457 4.36023 4.49027 4.50736 4.56575 4.61398 4.74743 4.77412 4.89991 4.93391 5.00809 5.01543 5.09707 5.27309 5.27566 5.40426 5.43784 5.46481 5.49747 5.49903 5.59000 5.77406 5.86935 5.93596 6.14956 6.71556 6.83404 7.04065 7.26876 7.43211 8.89260 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010007 B = 0.004791 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.264936 B = 5842.972044 C = 7564.523710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.035 3.965 4 O 0.110 5.890 5 N -0.358 5.358 6 C 0.085 3.915 7 C -0.051 4.051 8 C -0.108 4.108 9 C -0.124 4.124 10 C -0.099 4.099 11 C -0.117 4.117 12 C -0.096 4.096 13 C -0.258 4.258 14 C 0.595 3.405 15 O -0.567 6.567 16 N -0.688 5.688 17 C 0.281 3.719 18 H 0.006 0.994 19 C -0.549 4.549 20 H 0.070 0.930 21 C 0.021 3.979 22 N -0.912 5.912 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.270 1.270 27 C -0.118 4.118 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.133 0.867 39 H 0.400 0.600 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.063 0.937 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 7.747 -14.141 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.029 4.029 4 O 0.046 5.954 5 N -0.061 5.061 6 C -0.074 4.074 7 C -0.052 4.052 8 C -0.128 4.128 9 C -0.142 4.142 10 C -0.117 4.117 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.265 4.265 14 C 0.379 3.621 15 O -0.447 6.447 16 N -0.336 5.336 17 C 0.179 3.821 18 H 0.024 0.976 19 C -0.587 4.587 20 H 0.088 0.912 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.792 3.208 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.195 1.195 27 C -0.157 4.157 28 C -0.198 4.198 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.151 0.849 39 H 0.234 0.766 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.154 8.589 -14.592 16.972 hybrid contribution 0.414 -1.129 1.273 1.752 sum 1.567 7.460 -13.319 15.346 Atomic orbital electron populations 1.21777 0.92424 1.04194 1.02114 1.20479 0.97511 0.83838 1.06621 1.25068 0.97014 0.96854 0.83963 1.84454 1.60885 1.17239 1.32852 1.73883 1.17717 0.99058 1.15483 1.23168 1.00904 0.94597 0.88773 1.17793 0.99416 0.92481 0.95503 1.21374 0.99693 0.97669 0.94040 1.21342 0.98194 0.94290 1.00382 1.21691 0.94514 0.99915 0.95616 1.21475 1.00491 0.96181 0.95304 1.21357 0.95316 0.94802 1.00032 1.22066 1.13389 0.95629 0.95427 1.16938 0.83806 0.77335 0.84003 1.90778 1.29943 1.55589 1.68426 1.46287 1.14631 1.59722 1.12920 1.18467 0.95887 0.92490 0.75270 0.97570 1.21483 1.21931 1.19303 0.95970 0.91198 1.25694 0.97360 0.99045 0.95892 1.70027 1.39194 1.42944 1.02855 0.85476 0.79204 0.79135 0.77005 1.19269 1.21175 1.19453 1.21752 0.96223 0.95068 1.02697 1.21978 0.98211 0.98032 1.01544 0.90908 0.88711 0.94628 0.85017 0.88906 0.87247 0.84330 0.82271 0.82072 0.84863 0.76586 0.92533 0.90797 0.94642 0.93647 0.91870 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.05 -1.00 6.37 29.85 0.19 -0.81 16 3 C 0.03 0.97 6.79 25.44 0.17 1.15 16 4 O 0.11 3.06 11.05 76.95 0.85 3.91 16 5 N -0.36 -11.14 12.05 -45.01 -0.54 -11.69 16 6 C 0.09 2.85 7.03 44.50 0.31 3.16 16 7 C -0.05 -1.61 5.87 -20.05 -0.12 -1.73 16 8 C -0.11 -3.52 8.07 22.49 0.18 -3.34 16 9 C -0.12 -3.23 10.03 22.24 0.22 -3.01 16 10 C -0.10 -2.01 10.04 22.31 0.22 -1.79 16 11 C -0.12 -2.33 10.03 22.24 0.22 -2.11 16 12 C -0.10 -2.44 9.78 22.49 0.22 -2.22 16 13 C -0.26 -8.94 6.19 -18.61 -0.12 -9.06 16 14 C 0.59 24.37 5.14 86.62 0.45 24.82 16 15 O -0.57 -27.03 13.72 -4.10 -0.06 -27.08 16 16 N -0.69 -28.95 5.02 -449.51 -2.26 -31.20 16 17 C 0.28 14.15 2.24 44.25 0.10 14.25 16 18 H 0.01 0.38 7.58 -2.39 -0.02 0.36 16 19 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 20 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 21 C 0.02 1.09 5.29 84.66 0.45 1.53 16 22 N -0.91 -50.95 11.29 21.45 0.24 -50.71 16 23 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 C -0.12 -5.78 5.45 30.59 0.17 -5.62 16 28 C -0.14 -6.24 8.51 71.98 0.61 -5.63 16 29 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 34 H 0.11 4.16 5.04 -2.91 -0.01 4.14 16 35 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.40 15.13 8.52 -92.71 -0.79 14.34 16 40 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 42 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.06 2.66 2.32 -2.39 -0.01 2.65 16 45 H 0.03 1.25 7.84 -2.39 -0.02 1.24 16 Total: -1.00 -66.37 371.93 4.72 -61.64 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.24 Total: 32.84 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.22 Total: -20.88 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -2.56 Total: -93.60 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.79 Total: -23.17 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -66.37 4.72 -61.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281433924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.324 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds