Wall clock time and date at job start Tue Mar 31 2020 14:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47225 * 2 1 4 4 O 1.33500 * 126.72019 * 270.02460 * 3 2 1 5 5 N 1.20653 * 113.39270 * 179.97438 * 4 3 2 6 6 C 1.30864 * 112.10253 * 0.02562 * 5 4 3 7 7 C 1.48329 * 127.44724 * 180.02562 * 6 5 4 8 8 C 1.39365 * 120.12351 * 144.70132 * 7 6 5 9 9 C 1.38007 * 119.87261 * 179.72165 * 8 7 6 10 10 C 1.38322 * 120.12460 * 0.53023 * 9 8 7 11 11 C 1.38328 * 120.24984 * 359.77023 * 10 9 8 12 12 C 1.38012 * 120.12213 * 359.94926 * 11 10 9 13 13 C 1.37214 * 126.72544 * 89.97754 * 3 2 1 14 14 C 1.47280 * 128.57693 * 0.06375 * 13 3 2 15 15 O 1.21618 * 119.99817 * 269.94415 * 14 13 3 16 16 N 1.34776 * 120.00350 * 89.94410 * 14 13 3 17 17 C 1.46499 * 120.00466 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.46895 * 325.00307 * 17 16 14 19 19 C 1.50696 * 109.47109 * 205.00311 * 17 16 14 20 20 H 1.07996 * 120.00141 * 359.97438 * 19 17 16 21 21 C 1.37882 * 119.99707 * 179.97438 * 19 17 16 22 22 N 1.31515 * 120.00183 * 359.97438 * 21 19 17 23 23 Si 1.86791 * 119.99861 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47511 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47322 * 119.99979 * 23 21 19 26 26 H 1.48502 * 109.47252 * 239.99992 * 23 21 19 27 27 C 1.52999 * 109.47217 * 84.99774 * 17 16 14 28 28 C 1.53003 * 109.47011 * 295.00598 * 27 17 16 29 29 H 1.09003 * 109.46729 * 299.99940 * 1 2 3 30 30 H 1.08995 * 109.46772 * 60.00247 * 1 2 3 31 31 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46828 * 239.99687 * 2 1 3 33 33 H 1.09000 * 109.47211 * 119.99918 * 2 1 3 34 34 H 1.08004 * 120.06111 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.93807 * 180.29845 * 9 8 7 36 36 H 1.08007 * 119.87548 * 179.73882 * 10 9 8 37 37 H 1.08005 * 119.93942 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.05876 * 180.02562 * 12 11 10 39 39 H 0.97002 * 119.99695 * 0.02562 * 16 14 13 40 40 H 0.96995 * 120.00202 * 179.97438 * 22 21 19 41 41 H 1.09003 * 109.47032 * 55.00119 * 27 17 16 42 42 H 1.08991 * 109.46931 * 175.00361 * 27 17 16 43 43 H 1.08991 * 109.47467 * 60.00091 * 28 27 17 44 44 H 1.09003 * 109.46472 * 179.97438 * 28 27 17 45 45 H 1.08997 * 109.47136 * 299.99303 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2981 2.1735 -1.0701 5 7 2.6891 3.2805 -0.7920 6 6 2.7563 3.4685 0.5014 7 6 3.1894 4.6957 1.2130 8 6 2.5804 5.0606 2.4123 9 6 2.9914 6.2004 3.0730 10 6 3.9983 6.9859 2.5416 11 6 4.6021 6.6319 1.3485 12 6 4.2030 5.4912 0.6820 13 6 2.3055 2.1945 1.0998 14 6 2.1816 1.8420 2.5244 15 8 1.1375 2.0476 3.1131 16 7 3.2253 1.2915 3.1757 17 6 3.1023 0.9414 4.5929 18 1 2.4684 1.6729 5.0942 19 6 4.4679 0.9394 5.2302 20 1 5.3402 1.1749 4.6387 21 6 4.6036 0.6368 6.5685 22 7 3.5412 0.3504 7.2890 23 14 6.2963 0.6336 7.3584 24 1 7.3183 0.9867 6.3404 25 1 6.3306 1.6293 8.4596 26 1 6.5858 -0.7172 7.9032 27 6 2.4770 -0.4490 4.7223 28 6 1.0438 -0.4153 4.1876 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7910 4.4504 2.8258 35 1 2.5234 6.4815 4.0049 36 1 4.3139 7.8794 3.0600 37 1 5.3875 7.2492 0.9379 38 1 4.6755 5.2155 -0.2492 39 1 4.0582 1.1279 2.7062 40 1 3.6367 0.1372 8.2304 41 1 3.0627 -1.1658 4.1467 42 1 2.4668 -0.7466 5.7707 43 1 1.0540 -0.1177 3.1392 44 1 0.5985 -1.4060 4.2795 45 1 0.4580 0.3014 4.7632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281433927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:16 Heat of formation + Delta-G solvation = 32.519237 kcal Electronic energy + Delta-G solvation = -28515.668384 eV Core-core repulsion = 24693.818231 eV Total energy + Delta-G solvation = -3821.850153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.73611 -39.22290 -38.82280 -35.21718 -34.71646 -34.09121 -32.40811 -31.19458 -30.90132 -30.31426 -30.02331 -27.15850 -24.82591 -24.26874 -23.19490 -22.74500 -22.29827 -20.67141 -19.80396 -19.38202 -17.89127 -17.54071 -17.15160 -16.35708 -15.79683 -15.49618 -15.13086 -15.01149 -14.66558 -14.41621 -14.10590 -13.80372 -13.43780 -13.37392 -13.17866 -12.87606 -12.76801 -12.67136 -12.10680 -11.81822 -11.62633 -11.51889 -11.31886 -11.29598 -11.13681 -11.03158 -10.91849 -10.86488 -10.43540 -10.36751 -10.24345 -9.72589 -9.42106 -9.22374 -9.07549 -8.91215 -8.56761 -8.55475 -7.94310 -6.17324 -4.26397 0.92355 1.43702 1.45472 2.27038 2.88379 3.07160 3.20740 3.29244 3.32027 3.79894 3.84085 4.15859 4.34377 4.43735 4.88898 4.98122 4.98518 5.05649 5.09325 5.14697 5.16403 5.29501 5.36266 5.47864 5.54919 5.67801 5.74480 5.80576 5.90285 5.97390 6.06955 6.14842 6.31925 6.38886 6.43929 6.52945 6.56080 6.58047 6.95603 6.95856 7.11789 7.26727 7.33357 7.55356 7.66358 7.83125 8.11016 8.25808 8.54659 8.70297 8.98117 9.40791 10.88092 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.005200 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.165625 B = 5383.456058 C = 7556.384818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 C 0.008 3.992 4 O 0.099 5.901 5 N -0.352 5.352 6 C 0.090 3.910 7 C -0.026 4.026 8 C -0.081 4.081 9 C -0.115 4.115 10 C -0.107 4.107 11 C -0.126 4.126 12 C -0.090 4.090 13 C -0.222 4.222 14 C 0.584 3.416 15 O -0.533 6.533 16 N -0.692 5.692 17 C 0.271 3.729 18 H 0.051 0.949 19 C -0.533 4.533 20 H 0.062 0.938 21 C 0.068 3.932 22 N -0.882 5.882 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.128 4.128 28 C -0.139 4.139 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.390 0.610 40 H 0.264 0.736 41 H 0.032 0.968 42 H 0.101 0.899 43 H 0.038 0.962 44 H 0.024 0.976 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 4.386 -13.164 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.083 4.083 3 C -0.055 4.055 4 O 0.035 5.965 5 N -0.055 5.055 6 C -0.070 4.070 7 C -0.027 4.027 8 C -0.101 4.101 9 C -0.133 4.133 10 C -0.126 4.126 11 C -0.144 4.144 12 C -0.110 4.110 13 C -0.229 4.229 14 C 0.366 3.634 15 O -0.412 6.412 16 N -0.338 5.338 17 C 0.170 3.830 18 H 0.069 0.931 19 C -0.571 4.571 20 H 0.080 0.920 21 C -0.135 4.135 22 N -0.519 5.519 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.167 4.167 28 C -0.196 4.196 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.222 0.778 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.119 0.881 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.847 5.198 -13.594 14.670 hybrid contribution 1.269 -0.372 0.965 1.637 sum -0.578 4.826 -12.628 13.531 Atomic orbital electron populations 1.21793 0.92961 1.02924 1.03184 1.20239 0.97221 0.85721 1.05080 1.24566 0.99691 0.96267 0.84950 1.84458 1.61503 1.17388 1.33193 1.73907 1.17280 0.98380 1.15955 1.22967 1.01060 0.94406 0.88567 1.17606 0.98066 0.91832 0.95166 1.21396 0.99049 0.96500 0.93121 1.21122 0.97495 0.94757 0.99943 1.21282 0.95998 0.99549 0.95739 1.21030 1.00455 0.97008 0.95861 1.21130 0.95962 0.94345 0.99514 1.22373 1.09955 0.94088 0.96532 1.16768 0.84832 0.78577 0.83180 1.90798 1.28417 1.54803 1.67181 1.46529 1.13427 1.59775 1.14103 1.18870 0.96885 0.93191 0.74081 0.93094 1.21239 0.92274 1.48695 0.94937 0.92032 1.24857 0.97099 0.94630 0.96923 1.69892 1.28302 1.45965 1.07752 0.86423 0.83786 0.77753 0.79356 1.19734 1.20839 1.20824 1.21947 0.92771 0.98476 1.03494 1.21868 0.98770 0.98677 1.00306 0.91305 0.92188 0.91070 0.88969 0.88064 0.84766 0.85288 0.85770 0.85681 0.85801 0.77764 0.92570 0.94925 0.88109 0.94317 0.95680 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.90 37.16 0.37 -1.24 16 2 C -0.04 -0.49 6.38 -27.88 -0.18 -0.67 16 3 C 0.01 0.12 6.79 -34.68 -0.24 -0.12 16 4 O 0.10 1.45 11.05 18.63 0.21 1.65 16 5 N -0.35 -5.63 12.05 34.60 0.42 -5.21 16 6 C 0.09 1.51 7.03 -80.22 -0.56 0.95 16 7 C -0.03 -0.42 5.87 -104.91 -0.62 -1.03 16 8 C -0.08 -1.34 9.32 -39.25 -0.37 -1.70 16 9 C -0.12 -1.62 10.03 -39.64 -0.40 -2.02 16 10 C -0.11 -1.30 10.04 -39.52 -0.40 -1.70 16 11 C -0.13 -1.51 10.03 -39.63 -0.40 -1.91 16 12 C -0.09 -1.26 9.78 -39.25 -0.38 -1.64 16 13 C -0.22 -3.78 6.19 -102.69 -0.64 -4.42 16 14 C 0.58 11.43 5.00 -12.59 -0.06 11.37 16 15 O -0.53 -11.91 13.59 5.26 0.07 -11.84 16 16 N -0.69 -14.05 5.02 -56.06 -0.28 -14.33 16 17 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 18 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 19 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 22 N -0.88 -23.95 11.30 55.43 0.63 -23.32 16 23 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 28 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.13 2.45 6.60 -52.48 -0.35 2.11 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.39 7.27 8.52 -40.82 -0.35 6.92 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 43 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -29.35 377.79 -8.82 -38.17 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.29 Total: 9.67 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -4.24 Total: -15.72 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.76 Total: -42.87 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.28 Total: -10.19 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.35 -8.82 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281433927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.688 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds