Wall clock time and date at job start Tue Mar 31 2020 14:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47225 * 2 1 4 4 O 1.33500 * 126.72019 * 270.02460 * 3 2 1 5 5 N 1.20653 * 113.39270 * 179.97438 * 4 3 2 6 6 C 1.30864 * 112.10253 * 0.02562 * 5 4 3 7 7 C 1.48329 * 127.44724 * 180.02562 * 6 5 4 8 8 C 1.39365 * 120.12351 * 144.70132 * 7 6 5 9 9 C 1.38007 * 119.87261 * 179.72165 * 8 7 6 10 10 C 1.38322 * 120.12460 * 0.53023 * 9 8 7 11 11 C 1.38328 * 120.24984 * 359.77023 * 10 9 8 12 12 C 1.38012 * 120.12213 * 359.94926 * 11 10 9 13 13 C 1.37214 * 126.72544 * 89.97754 * 3 2 1 14 14 C 1.47280 * 128.57693 * 0.06375 * 13 3 2 15 15 O 1.21618 * 119.99817 * 269.94415 * 14 13 3 16 16 N 1.34776 * 120.00350 * 89.94410 * 14 13 3 17 17 C 1.46499 * 120.00466 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.46895 * 325.00307 * 17 16 14 19 19 C 1.50696 * 109.47109 * 205.00311 * 17 16 14 20 20 H 1.07996 * 120.00141 * 359.97438 * 19 17 16 21 21 C 1.37882 * 119.99707 * 179.97438 * 19 17 16 22 22 N 1.31515 * 120.00183 * 359.97438 * 21 19 17 23 23 Si 1.86791 * 119.99861 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47511 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47322 * 119.99979 * 23 21 19 26 26 H 1.48502 * 109.47252 * 239.99992 * 23 21 19 27 27 C 1.52999 * 109.47217 * 84.99774 * 17 16 14 28 28 C 1.53003 * 109.47011 * 295.00598 * 27 17 16 29 29 H 1.09003 * 109.46729 * 299.99940 * 1 2 3 30 30 H 1.08995 * 109.46772 * 60.00247 * 1 2 3 31 31 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46828 * 239.99687 * 2 1 3 33 33 H 1.09000 * 109.47211 * 119.99918 * 2 1 3 34 34 H 1.08004 * 120.06111 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.93807 * 180.29845 * 9 8 7 36 36 H 1.08007 * 119.87548 * 179.73882 * 10 9 8 37 37 H 1.08005 * 119.93942 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.05876 * 180.02562 * 12 11 10 39 39 H 0.97002 * 119.99695 * 0.02562 * 16 14 13 40 40 H 0.96995 * 120.00202 * 179.97438 * 22 21 19 41 41 H 1.09003 * 109.47032 * 55.00119 * 27 17 16 42 42 H 1.08991 * 109.46931 * 175.00361 * 27 17 16 43 43 H 1.08991 * 109.47467 * 60.00091 * 28 27 17 44 44 H 1.09003 * 109.46472 * 179.97438 * 28 27 17 45 45 H 1.08997 * 109.47136 * 299.99303 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2981 2.1735 -1.0701 5 7 2.6891 3.2805 -0.7920 6 6 2.7563 3.4685 0.5014 7 6 3.1894 4.6957 1.2130 8 6 2.5804 5.0606 2.4123 9 6 2.9914 6.2004 3.0730 10 6 3.9983 6.9859 2.5416 11 6 4.6021 6.6319 1.3485 12 6 4.2030 5.4912 0.6820 13 6 2.3055 2.1945 1.0998 14 6 2.1816 1.8420 2.5244 15 8 1.1375 2.0476 3.1131 16 7 3.2253 1.2915 3.1757 17 6 3.1023 0.9414 4.5929 18 1 2.4684 1.6729 5.0942 19 6 4.4679 0.9394 5.2302 20 1 5.3402 1.1749 4.6387 21 6 4.6036 0.6368 6.5685 22 7 3.5412 0.3504 7.2890 23 14 6.2963 0.6336 7.3584 24 1 7.3183 0.9867 6.3404 25 1 6.3306 1.6293 8.4596 26 1 6.5858 -0.7172 7.9032 27 6 2.4770 -0.4490 4.7223 28 6 1.0438 -0.4153 4.1876 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.7910 4.4504 2.8258 35 1 2.5234 6.4815 4.0049 36 1 4.3139 7.8794 3.0600 37 1 5.3875 7.2492 0.9379 38 1 4.6755 5.2155 -0.2492 39 1 4.0582 1.1279 2.7062 40 1 3.6367 0.1372 8.2304 41 1 3.0627 -1.1658 4.1467 42 1 2.4668 -0.7466 5.7707 43 1 1.0540 -0.1177 3.1392 44 1 0.5985 -1.4060 4.2795 45 1 0.4580 0.3014 4.7632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281433927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:15 Heat of formation + Delta-G solvation = 16.910989 kcal Electronic energy + Delta-G solvation = -28516.345209 eV Core-core repulsion = 24693.818231 eV Total energy + Delta-G solvation = -3822.526977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.98045 -40.75581 -40.03744 -37.01012 -35.83318 -35.30968 -34.29623 -32.87733 -32.02353 -31.48216 -31.19750 -29.04353 -26.27816 -25.31399 -24.86457 -23.93726 -23.47437 -22.16916 -21.34407 -20.89435 -19.39571 -18.83605 -18.36752 -17.81645 -17.31191 -17.20607 -16.47280 -16.36535 -16.02145 -15.82497 -15.33202 -15.07855 -14.79529 -14.60558 -14.45227 -14.43089 -13.98908 -13.85022 -13.57305 -13.48731 -13.18691 -12.93097 -12.85387 -12.71533 -12.57559 -12.32910 -12.16944 -12.15626 -12.09055 -11.94492 -11.62800 -11.52485 -11.08070 -11.05103 -10.55059 -10.49467 -10.00517 -9.73808 -9.68086 -8.17452 -6.34034 -0.22148 0.24051 0.35210 1.04694 1.42214 1.43973 1.47217 1.55601 1.75318 2.33313 2.51159 2.71511 2.87828 3.12327 3.24489 3.78855 3.83879 3.91048 3.98471 4.08051 4.17455 4.21752 4.28565 4.35317 4.47919 4.51628 4.56091 4.59439 4.74725 4.78913 4.88577 4.94558 4.99632 5.02348 5.06836 5.25115 5.31863 5.38623 5.43685 5.44808 5.47020 5.50954 5.58478 5.78387 5.88115 5.91610 6.15861 6.71287 6.83805 7.04392 7.27019 7.43019 8.88004 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.005200 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.165625 B = 5383.456058 C = 7556.384818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.035 3.965 4 O 0.111 5.889 5 N -0.357 5.357 6 C 0.082 3.918 7 C -0.049 4.049 8 C -0.109 4.109 9 C -0.127 4.127 10 C -0.100 4.100 11 C -0.116 4.116 12 C -0.096 4.096 13 C -0.257 4.257 14 C 0.596 3.404 15 O -0.566 6.566 16 N -0.689 5.689 17 C 0.282 3.718 18 H 0.002 0.998 19 C -0.547 4.547 20 H 0.066 0.934 21 C 0.021 3.979 22 N -0.911 5.911 23 Si 0.965 3.035 24 H -0.265 1.265 25 H -0.283 1.283 26 H -0.276 1.276 27 C -0.120 4.120 28 C -0.126 4.126 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.400 0.600 40 H 0.266 0.734 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 4.494 -15.021 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.028 4.028 4 O 0.046 5.954 5 N -0.061 5.061 6 C -0.077 4.077 7 C -0.051 4.051 8 C -0.128 4.128 9 C -0.145 4.145 10 C -0.118 4.118 11 C -0.134 4.134 12 C -0.115 4.115 13 C -0.264 4.264 14 C 0.380 3.620 15 O -0.447 6.447 16 N -0.336 5.336 17 C 0.179 3.821 18 H 0.020 0.980 19 C -0.585 4.585 20 H 0.084 0.916 21 C -0.179 4.179 22 N -0.550 5.550 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.209 1.209 26 H -0.202 1.202 27 C -0.159 4.159 28 C -0.183 4.183 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.153 0.847 39 H 0.234 0.766 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.001 5.310 -15.485 16.370 hybrid contribution 0.658 -0.348 1.508 1.682 sum 0.658 4.962 -13.977 14.846 Atomic orbital electron populations 1.21785 0.92379 1.04260 1.02127 1.20506 0.97523 0.83675 1.06720 1.25092 0.96972 0.96947 0.83834 1.84452 1.60964 1.17050 1.32894 1.73878 1.17827 0.98957 1.15400 1.23155 1.01101 0.94616 0.88834 1.17788 0.99376 0.92481 0.95405 1.21269 0.99532 0.97729 0.94310 1.21353 0.98374 0.94387 1.00341 1.21693 0.94480 0.99935 0.95697 1.21495 1.00428 0.96239 0.95229 1.21367 0.95317 0.94718 1.00081 1.22070 1.13330 0.95525 0.95500 1.16911 0.83792 0.77179 0.84080 1.90775 1.29735 1.55773 1.68393 1.46280 1.14226 1.60248 1.12831 1.18463 0.95578 0.92454 0.75616 0.98022 1.21525 0.92858 1.48636 0.95476 0.91634 1.25662 1.00585 0.94212 0.97448 1.70031 1.30323 1.46601 1.07997 0.85408 0.79549 0.77770 0.78306 1.18882 1.20921 1.20203 1.21781 0.94214 0.97865 1.02074 1.21711 0.97094 0.99351 1.00134 0.94519 0.91072 0.88560 0.85004 0.88659 0.88065 0.84446 0.82216 0.81890 0.84659 0.76634 0.92505 0.93714 0.90811 0.93428 0.93138 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.90 71.98 0.71 -2.18 16 2 C -0.05 -0.93 6.38 29.85 0.19 -0.74 16 3 C 0.04 0.97 6.79 25.44 0.17 1.14 16 4 O 0.11 3.07 11.05 76.93 0.85 3.92 16 5 N -0.36 -11.23 12.05 -45.01 -0.54 -11.77 16 6 C 0.08 2.82 7.03 44.51 0.31 3.13 16 7 C -0.05 -1.64 5.87 -20.05 -0.12 -1.76 16 8 C -0.11 -3.79 9.32 22.49 0.21 -3.58 16 9 C -0.13 -3.60 10.03 22.23 0.22 -3.38 16 10 C -0.10 -2.21 10.04 22.31 0.22 -1.98 16 11 C -0.12 -2.48 10.03 22.24 0.22 -2.26 16 12 C -0.10 -2.56 9.78 22.49 0.22 -2.34 16 13 C -0.26 -8.93 6.19 -18.61 -0.12 -9.04 16 14 C 0.60 24.42 5.00 86.62 0.43 24.85 16 15 O -0.57 -27.00 13.59 -4.09 -0.06 -27.06 16 16 N -0.69 -28.97 5.02 -449.52 -2.26 -31.22 16 17 C 0.28 14.13 2.24 44.24 0.10 14.23 16 18 H 0.00 0.11 7.58 -2.38 -0.02 0.09 16 19 C -0.55 -28.60 8.73 25.60 0.22 -28.38 16 20 H 0.07 3.30 7.74 -2.91 -0.02 3.27 16 21 C 0.02 1.13 5.29 84.66 0.45 1.58 16 22 N -0.91 -50.92 11.30 21.45 0.24 -50.68 16 23 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 27 C -0.12 -5.69 5.45 30.60 0.17 -5.52 16 28 C -0.13 -5.34 8.51 71.98 0.61 -4.73 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.10 8.10 -2.39 -0.02 2.08 16 34 H 0.10 4.11 6.60 -2.91 -0.02 4.10 16 35 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.40 15.16 8.52 -92.71 -0.79 14.37 16 40 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 3.93 5.95 -2.39 -0.01 3.91 16 43 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.02 1.16 7.84 -2.39 -0.02 1.14 16 Total: -1.00 -67.17 377.79 4.73 -62.44 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.22 Total: 31.67 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.24 Total: -20.95 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.56 Total: -93.67 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.79 Total: -23.13 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -67.17 4.73 -62.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281433927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.353 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds