Wall clock time and date at job start Tue Mar 31 2020 16:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47157 * 181.09410 * 3 2 1 5 5 C 1.36894 * 120.00014 * 84.43410 * 4 3 2 6 6 H 1.07998 * 119.99987 * 174.89054 * 5 4 3 7 7 C 1.39024 * 120.00183 * 354.61554 * 5 4 3 8 8 N 1.31380 * 119.99917 * 348.61412 * 7 5 4 9 9 Si 1.86802 * 120.00280 * 168.60987 * 7 5 4 10 10 H 1.48500 * 109.46956 * 90.00069 * 9 7 5 11 11 H 1.48490 * 109.47547 * 210.00369 * 9 7 5 12 12 H 1.48507 * 109.46898 * 330.00653 * 9 7 5 13 13 C 1.34770 * 120.00013 * 264.44128 * 4 3 2 14 14 O 1.21627 * 120.00300 * 174.96476 * 13 4 3 15 15 C 1.47409 * 120.00041 * 354.96141 * 13 4 3 16 16 C 1.39755 * 120.20499 * 305.02228 * 15 13 4 17 17 C 1.37780 * 119.91637 * 179.97438 * 16 15 13 18 18 C 1.38580 * 120.33723 * 359.97438 * 17 16 15 19 19 C 1.38043 * 120.41502 * 0.02562 * 18 17 16 20 20 C 1.38823 * 120.07615 * 359.74513 * 19 18 17 21 21 N 1.39298 * 120.17147 * 180.26962 * 20 19 18 22 22 C 1.34772 * 119.99697 * 333.99484 * 21 20 19 23 23 O 1.21279 * 120.00180 * 4.10481 * 22 21 20 24 24 C 1.50700 * 119.99890 * 184.10783 * 22 21 20 25 25 C 1.53005 * 109.47063 * 179.97438 * 24 22 21 26 26 C 1.53004 * 109.47233 * 299.99646 * 24 22 21 27 27 C 1.53005 * 109.46983 * 59.99763 * 24 22 21 28 28 H 4.40646 * 5.51481 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47398 * 61.09020 * 3 2 1 30 30 H 1.09008 * 109.47076 * 301.09097 * 3 2 1 31 31 H 0.97000 * 119.99532 * 179.97438 * 8 7 5 32 32 H 1.07997 * 120.03944 * 359.94876 * 16 15 13 33 33 H 1.07995 * 119.83262 * 179.97438 * 17 16 15 34 34 H 1.07994 * 119.79356 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.96344 * 180.02562 * 19 18 17 36 36 H 0.97002 * 119.99803 * 153.98511 * 21 20 19 37 37 H 1.09000 * 109.46840 * 60.00427 * 25 24 22 38 38 H 1.09009 * 109.46799 * 179.97438 * 25 24 22 39 39 H 1.08993 * 109.47252 * 299.99815 * 25 24 22 40 40 H 1.08995 * 109.46765 * 60.00160 * 26 24 22 41 41 H 1.08999 * 109.46966 * 180.02562 * 26 24 22 42 42 H 1.08998 * 109.47049 * 299.99835 * 26 24 22 43 43 H 1.09001 * 109.47402 * 60.00373 * 27 24 22 44 44 H 1.08999 * 109.46933 * 180.02562 * 27 24 22 45 45 H 1.08995 * 109.46796 * 299.99627 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3818 0.0264 5 6 3.2532 2.0429 1.2192 6 1 3.6897 3.0303 1.2479 7 6 2.8074 1.4455 2.3927 8 7 2.0751 0.3561 2.3381 9 14 3.2498 2.1916 4.0471 10 1 2.2067 3.1716 4.4429 11 1 3.3326 1.1171 5.0686 12 1 4.5619 2.8796 3.9449 13 6 3.4647 2.0017 -1.1237 14 8 3.7818 3.1758 -1.1123 15 6 3.4423 1.2566 -2.3954 16 6 4.1748 0.0741 -2.5305 17 6 4.1493 -0.6178 -3.7217 18 6 3.3998 -0.1476 -4.7883 19 6 2.6711 1.0189 -4.6701 20 6 2.6807 1.7272 -3.4762 21 7 1.9416 2.9015 -3.3529 22 6 1.6546 3.6349 -4.4465 23 8 1.9748 3.2354 -5.5459 24 6 0.9357 4.9517 -4.3032 25 6 0.7355 5.5764 -5.6855 26 6 -0.4262 4.7203 -3.6455 27 6 1.7685 5.8954 -3.4333 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.4960 -0.8996 30 1 3.0096 -0.5299 0.8801 31 1 1.7644 -0.0608 3.1570 32 1 4.7605 -0.2966 -1.7023 33 1 4.7161 -1.5312 -3.8247 34 1 3.3864 -0.6967 -5.7181 35 1 2.0892 1.3784 -5.5058 36 1 1.6335 3.1912 -2.4799 37 1 0.1423 4.9042 -6.3055 38 1 0.2151 6.5286 -5.5819 39 1 1.7058 5.7413 -6.1537 40 1 -0.2832 4.2755 -2.6608 41 1 -0.9463 5.6726 -3.5423 42 1 -1.0195 4.0480 -4.2653 43 1 2.7388 6.0603 -3.9019 44 1 1.2484 6.8476 -3.3293 45 1 1.9114 5.4505 -2.4486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282086947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:47 Heat of formation + Delta-G solvation = 29.254702 kcal Electronic energy + Delta-G solvation = -28879.977332 eV Core-core repulsion = 25057.985618 eV Total energy + Delta-G solvation = -3821.991714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.76014 -39.20772 -37.59033 -35.63340 -35.37599 -34.45116 -32.17566 -31.40869 -30.49877 -29.35306 -27.36647 -27.14086 -26.55362 -25.06905 -23.77620 -22.88010 -21.55991 -19.63148 -19.06919 -18.03102 -17.42298 -16.78277 -16.65656 -16.33973 -15.40597 -15.14041 -14.83954 -14.45748 -14.30480 -14.04945 -13.91782 -13.74148 -13.46396 -13.37245 -12.83597 -12.64624 -12.42506 -12.39406 -12.21136 -12.10217 -11.86752 -11.71996 -11.50007 -11.45358 -11.11849 -11.08491 -10.99481 -10.93922 -10.61672 -10.41157 -10.20986 -9.54491 -9.35742 -9.32568 -8.85374 -8.66188 -8.34271 -8.04847 -7.72535 -6.40914 -3.96869 1.46241 1.69318 2.77849 3.05586 3.16586 3.21857 3.28206 3.56088 3.78698 4.06826 4.13137 4.24209 4.55460 4.73646 4.81924 4.83768 4.97022 5.14458 5.32196 5.34653 5.49284 5.52307 5.56068 5.57671 5.70237 5.75215 5.80708 5.81514 5.86092 5.87963 5.90284 6.06917 6.20042 6.27508 6.29196 6.36456 6.57380 6.65081 6.79535 6.84395 6.93220 7.08590 7.34532 7.41187 7.64590 7.87287 8.27297 8.30420 8.83424 8.97558 9.20894 9.74968 10.51105 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.004734 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.661558 B = 5912.921373 C = 7070.200708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.094 4.094 3 C 0.213 3.787 4 N -0.425 5.425 5 C -0.303 4.303 6 H 0.109 0.891 7 C 0.028 3.972 8 N -0.867 5.867 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.472 3.528 14 O -0.583 6.583 15 C -0.121 4.121 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.102 4.102 19 C -0.141 4.141 20 C 0.179 3.821 21 N -0.650 5.650 22 C 0.525 3.475 23 O -0.528 6.528 24 C -0.084 4.084 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.143 4.143 28 H 0.197 0.803 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.270 0.730 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 1.052 -9.582 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.096 4.096 3 C 0.091 3.909 4 N -0.141 5.141 5 C -0.430 4.430 6 H 0.127 0.873 7 C -0.175 4.175 8 N -0.506 5.506 9 Si 0.758 3.242 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.261 3.739 14 O -0.468 6.468 15 C -0.126 4.126 16 C -0.102 4.102 17 C -0.163 4.163 18 C -0.121 4.121 19 C -0.161 4.161 20 C 0.082 3.918 21 N -0.292 5.292 22 C 0.313 3.687 23 O -0.405 6.405 24 C -0.087 4.087 25 C -0.183 4.183 26 C -0.201 4.201 27 C -0.201 4.201 28 H 0.214 0.786 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.169 0.831 36 H 0.254 0.746 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.859 1.302 -10.139 10.615 hybrid contribution -0.317 0.244 1.550 1.601 sum -3.176 1.546 -8.589 9.287 Atomic orbital electron populations 1.24224 0.95348 1.02330 1.07911 1.23117 0.94237 0.98056 0.94201 1.19016 0.84555 0.84815 1.02545 1.43759 1.53592 1.11312 1.05395 1.19839 1.38072 1.02956 0.82170 0.87315 1.25355 0.95442 0.96548 1.00132 1.70019 1.32219 1.19765 1.28622 0.85826 0.79257 0.78489 0.80584 1.20342 1.20666 1.19291 1.17733 0.86429 0.86984 0.82715 1.90637 1.54582 1.15626 1.85989 1.20003 0.99589 0.97562 0.95492 1.21106 0.98065 0.93224 0.97815 1.20975 1.01359 1.00616 0.93332 1.21055 0.96889 0.95683 0.98458 1.21510 1.02089 0.94827 0.97676 1.17689 0.93032 0.86696 0.94359 1.43344 1.51993 1.22125 1.11744 1.20725 0.78546 0.85669 0.83711 1.90570 1.52765 1.71158 1.26015 1.20816 0.96424 0.92624 0.98875 1.21656 1.02619 1.00014 0.93973 1.21902 0.94618 1.02814 1.00772 1.21894 0.99555 0.98742 0.99889 0.78583 0.91391 0.85202 0.91854 0.85266 0.86040 0.86090 0.83119 0.74555 0.91992 0.91974 0.91885 0.91839 0.91081 0.91997 0.91952 0.91385 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.82 19.25 29.55 0.57 -5.26 16 2 C -0.09 -2.13 11.43 -37.12 -0.42 -2.55 16 3 C 0.21 4.69 5.05 -6.83 -0.03 4.65 16 4 N -0.42 -10.27 2.59 -119.16 -0.31 -10.58 16 5 C -0.30 -7.87 9.49 -15.00 -0.14 -8.01 16 6 H 0.11 2.96 7.21 -52.49 -0.38 2.59 16 7 C 0.03 0.70 5.28 -17.45 -0.09 0.61 16 8 N -0.87 -21.32 8.27 55.50 0.46 -20.86 16 9 Si 0.93 19.64 29.57 -169.99 -5.03 14.61 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.47 11.17 6.26 -12.53 -0.08 11.09 16 14 O -0.58 -15.29 16.08 5.25 0.08 -15.20 16 15 C -0.12 -2.44 4.92 -104.81 -0.52 -2.96 16 16 C -0.08 -1.43 7.47 -39.18 -0.29 -1.73 16 17 C -0.14 -2.12 10.02 -39.62 -0.40 -2.51 16 18 C -0.10 -1.52 10.03 -39.53 -0.40 -1.91 16 19 C -0.14 -2.44 8.77 -39.44 -0.35 -2.79 16 20 C 0.18 3.44 6.45 -83.46 -0.54 2.90 16 21 N -0.65 -11.78 4.72 -9.67 -0.05 -11.82 16 22 C 0.53 8.69 6.36 -10.99 -0.07 8.62 16 23 O -0.53 -9.64 12.91 5.56 0.07 -9.57 16 24 C -0.08 -1.09 0.87 -155.65 -0.14 -1.23 16 25 C -0.12 -1.42 7.76 37.16 0.29 -1.13 16 26 C -0.14 -1.62 8.37 37.16 0.31 -1.31 16 27 C -0.14 -1.84 8.37 37.16 0.31 -1.53 16 28 H 0.20 3.35 7.80 -54.08 -0.42 2.93 16 29 H 0.07 1.32 4.38 -51.93 -0.23 1.10 16 30 H 0.13 3.00 5.99 -51.92 -0.31 2.69 16 31 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 32 H 0.13 2.10 7.55 -52.49 -0.40 1.70 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.15 2.62 5.54 -52.49 -0.29 2.33 16 36 H 0.42 7.77 6.53 -40.82 -0.27 7.50 16 37 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.04 7.66 -51.93 -0.40 0.65 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -30.03 373.11 -7.14 -37.17 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -6.01 Total: 15.68 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.98 Total: -5.05 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.10 Total: -43.26 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.16 Total: -24.77 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.03 -7.14 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282086947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.429 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds