Wall clock time and date at job start Tue Mar 31 2020 16:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47157 * 181.09410 * 3 2 1 5 5 C 1.36894 * 120.00014 * 84.43410 * 4 3 2 6 6 H 1.07998 * 119.99987 * 174.89054 * 5 4 3 7 7 C 1.39024 * 120.00183 * 354.61554 * 5 4 3 8 8 N 1.31380 * 119.99917 * 348.61412 * 7 5 4 9 9 Si 1.86802 * 120.00280 * 168.60987 * 7 5 4 10 10 H 1.48500 * 109.46956 * 90.00069 * 9 7 5 11 11 H 1.48490 * 109.47547 * 210.00369 * 9 7 5 12 12 H 1.48507 * 109.46898 * 330.00653 * 9 7 5 13 13 C 1.34770 * 120.00013 * 264.44128 * 4 3 2 14 14 O 1.21627 * 120.00300 * 174.96476 * 13 4 3 15 15 C 1.47409 * 120.00041 * 354.96141 * 13 4 3 16 16 C 1.39755 * 120.20499 * 305.02228 * 15 13 4 17 17 C 1.37780 * 119.91637 * 179.97438 * 16 15 13 18 18 C 1.38580 * 120.33723 * 359.97438 * 17 16 15 19 19 C 1.38043 * 120.41502 * 0.02562 * 18 17 16 20 20 C 1.38823 * 120.07615 * 359.74513 * 19 18 17 21 21 N 1.39298 * 120.17147 * 180.26962 * 20 19 18 22 22 C 1.34772 * 119.99697 * 333.99484 * 21 20 19 23 23 O 1.21279 * 120.00180 * 4.10481 * 22 21 20 24 24 C 1.50700 * 119.99890 * 184.10783 * 22 21 20 25 25 C 1.53005 * 109.47063 * 179.97438 * 24 22 21 26 26 C 1.53004 * 109.47233 * 299.99646 * 24 22 21 27 27 C 1.53005 * 109.46983 * 59.99763 * 24 22 21 28 28 H 4.40646 * 5.51481 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47398 * 61.09020 * 3 2 1 30 30 H 1.09008 * 109.47076 * 301.09097 * 3 2 1 31 31 H 0.97000 * 119.99532 * 179.97438 * 8 7 5 32 32 H 1.07997 * 120.03944 * 359.94876 * 16 15 13 33 33 H 1.07995 * 119.83262 * 179.97438 * 17 16 15 34 34 H 1.07994 * 119.79356 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.96344 * 180.02562 * 19 18 17 36 36 H 0.97002 * 119.99803 * 153.98511 * 21 20 19 37 37 H 1.09000 * 109.46840 * 60.00427 * 25 24 22 38 38 H 1.09009 * 109.46799 * 179.97438 * 25 24 22 39 39 H 1.08993 * 109.47252 * 299.99815 * 25 24 22 40 40 H 1.08995 * 109.46765 * 60.00160 * 26 24 22 41 41 H 1.08999 * 109.46966 * 180.02562 * 26 24 22 42 42 H 1.08998 * 109.47049 * 299.99835 * 26 24 22 43 43 H 1.09001 * 109.47402 * 60.00373 * 27 24 22 44 44 H 1.08999 * 109.46933 * 180.02562 * 27 24 22 45 45 H 1.08995 * 109.46796 * 299.99627 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3818 0.0264 5 6 3.2532 2.0429 1.2192 6 1 3.6897 3.0303 1.2479 7 6 2.8074 1.4455 2.3927 8 7 2.0751 0.3561 2.3381 9 14 3.2498 2.1916 4.0471 10 1 2.2067 3.1716 4.4429 11 1 3.3326 1.1171 5.0686 12 1 4.5619 2.8796 3.9449 13 6 3.4647 2.0017 -1.1237 14 8 3.7818 3.1758 -1.1123 15 6 3.4423 1.2566 -2.3954 16 6 4.1748 0.0741 -2.5305 17 6 4.1493 -0.6178 -3.7217 18 6 3.3998 -0.1476 -4.7883 19 6 2.6711 1.0189 -4.6701 20 6 2.6807 1.7272 -3.4762 21 7 1.9416 2.9015 -3.3529 22 6 1.6546 3.6349 -4.4465 23 8 1.9748 3.2354 -5.5459 24 6 0.9357 4.9517 -4.3032 25 6 0.7355 5.5764 -5.6855 26 6 -0.4262 4.7203 -3.6455 27 6 1.7685 5.8954 -3.4333 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.4960 -0.8996 30 1 3.0096 -0.5299 0.8801 31 1 1.7644 -0.0608 3.1570 32 1 4.7605 -0.2966 -1.7023 33 1 4.7161 -1.5312 -3.8247 34 1 3.3864 -0.6967 -5.7181 35 1 2.0892 1.3784 -5.5058 36 1 1.6335 3.1912 -2.4799 37 1 0.1423 4.9042 -6.3055 38 1 0.2151 6.5286 -5.5819 39 1 1.7058 5.7413 -6.1537 40 1 -0.2832 4.2755 -2.6608 41 1 -0.9463 5.6726 -3.5423 42 1 -1.0195 4.0480 -4.2653 43 1 2.7388 6.0603 -3.9019 44 1 1.2484 6.8476 -3.3293 45 1 1.9114 5.4505 -2.4486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282086947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:46 Heat of formation + Delta-G solvation = 13.227806 kcal Electronic energy + Delta-G solvation = -28880.672311 eV Core-core repulsion = 25057.985618 eV Total energy + Delta-G solvation = -3822.686692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11122 -40.76824 -39.08564 -37.19385 -36.75734 -35.83475 -33.99176 -33.14717 -31.97863 -30.66421 -28.34590 -28.33992 -28.09085 -26.83007 -25.04481 -24.37346 -22.87840 -21.20926 -20.34451 -19.80325 -18.89047 -18.30173 -18.13699 -17.85425 -16.96189 -16.50574 -16.24346 -16.04632 -15.87573 -15.48973 -15.18497 -15.03054 -14.78634 -14.64744 -14.46462 -14.16869 -14.15502 -13.58585 -13.38183 -13.25992 -13.16599 -12.90089 -12.83033 -12.77887 -12.71292 -12.49212 -12.40569 -12.14136 -11.99764 -11.96423 -11.55276 -11.36918 -11.08966 -10.64871 -10.56395 -10.44349 -10.02586 -9.69404 -9.08913 -8.28400 -5.93464 0.08755 0.36091 1.34873 1.42175 1.48878 1.53743 1.82757 2.00639 2.09584 2.31695 2.42332 2.81782 3.09059 3.14512 3.39058 3.72739 3.82639 3.88675 3.94023 4.01883 4.12820 4.22331 4.46067 4.51050 4.51993 4.61431 4.63523 4.66988 4.74029 4.84041 4.88758 4.94202 4.99607 5.13208 5.14845 5.22275 5.22785 5.31461 5.37324 5.42727 5.43645 5.49883 5.55548 5.94997 6.05848 6.29672 6.41206 6.94129 7.07165 7.14087 7.35134 7.90001 8.60909 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.004734 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.661558 B = 5912.921373 C = 7070.200708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.136 4.136 3 C 0.220 3.780 4 N -0.433 5.433 5 C -0.340 4.340 6 H 0.082 0.918 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.991 3.009 10 H -0.278 1.278 11 H -0.268 1.268 12 H -0.273 1.273 13 C 0.472 3.528 14 O -0.622 6.622 15 C -0.152 4.152 16 C -0.089 4.089 17 C -0.130 4.130 18 C -0.087 4.087 19 C -0.152 4.152 20 C 0.160 3.840 21 N -0.656 5.656 22 C 0.518 3.482 23 O -0.548 6.548 24 C -0.081 4.081 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.139 4.139 28 H 0.231 0.769 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.410 0.590 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 0.079 -10.588 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.138 4.138 3 C 0.098 3.902 4 N -0.148 5.148 5 C -0.467 4.467 6 H 0.100 0.900 7 C -0.200 4.200 8 N -0.511 5.511 9 Si 0.815 3.185 10 H -0.203 1.203 11 H -0.192 1.192 12 H -0.198 1.198 13 C 0.262 3.738 14 O -0.511 6.511 15 C -0.157 4.157 16 C -0.108 4.108 17 C -0.149 4.149 18 C -0.105 4.105 19 C -0.172 4.172 20 C 0.063 3.937 21 N -0.297 5.297 22 C 0.308 3.692 23 O -0.426 6.426 24 C -0.084 4.084 25 C -0.177 4.177 26 C -0.197 4.197 27 C -0.196 4.196 28 H 0.247 0.753 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.246 0.754 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.800 0.294 -11.155 11.788 hybrid contribution -0.038 0.495 1.778 1.846 sum -3.838 0.789 -9.377 10.163 Atomic orbital electron populations 1.25082 0.96327 1.00642 1.06307 1.23474 0.95008 0.99618 0.95700 1.18949 0.84774 0.83618 1.02869 1.43857 1.53724 1.12103 1.05132 1.19730 1.40276 1.02832 0.83879 0.89973 1.25989 0.94800 0.96857 1.02328 1.70135 1.31677 1.19923 1.29350 0.84964 0.78516 0.77970 0.77065 1.20345 1.19228 1.19794 1.18286 0.85005 0.86740 0.83754 1.90583 1.56062 1.17544 1.86884 1.19849 1.02439 0.99259 0.94183 1.21310 0.97623 0.92474 0.99428 1.21394 1.00536 1.01252 0.91686 1.21547 0.94647 0.94368 0.99938 1.21647 1.02985 0.95814 0.96748 1.18001 0.93475 0.87358 0.94848 1.43488 1.52072 1.22331 1.11823 1.21479 0.78178 0.86533 0.82991 1.90538 1.53712 1.71905 1.26483 1.20910 0.96731 0.90518 1.00209 1.21650 1.02364 1.01259 0.92452 1.21903 0.93753 1.04340 0.99723 1.21867 0.99566 0.99997 0.98202 0.75254 0.89179 0.86673 0.91578 0.84739 0.81768 0.82101 0.83365 0.75403 0.92114 0.88942 0.93028 0.93397 0.88295 0.91549 0.93088 0.88247 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.82 19.25 74.32 1.43 -9.39 16 2 C -0.14 -6.18 11.43 31.13 0.36 -5.82 16 3 C 0.22 9.88 5.05 84.57 0.43 10.30 16 4 N -0.43 -21.86 2.59 -649.17 -1.68 -23.55 16 5 C -0.34 -18.49 9.49 84.09 0.80 -17.69 16 6 H 0.08 4.80 7.21 -2.91 -0.02 4.77 16 7 C 0.00 0.14 5.28 84.95 0.45 0.59 16 8 N -0.87 -43.18 8.27 21.68 0.18 -43.00 16 9 Si 0.99 40.77 29.57 68.60 2.03 42.80 16 10 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 C 0.47 23.48 6.26 86.66 0.54 24.02 16 14 O -0.62 -34.89 16.08 -4.12 -0.07 -34.96 16 15 C -0.15 -6.30 4.92 -19.98 -0.10 -6.40 16 16 C -0.09 -3.02 7.47 22.53 0.17 -2.85 16 17 C -0.13 -3.42 10.02 22.24 0.22 -3.20 16 18 C -0.09 -2.31 10.03 22.31 0.22 -2.08 16 19 C -0.15 -5.13 8.77 22.36 0.20 -4.93 16 20 C 0.16 6.28 6.45 38.61 0.25 6.53 16 21 N -0.66 -24.86 4.72 -302.91 -1.43 -26.29 16 22 C 0.52 17.57 6.36 87.66 0.56 18.13 16 23 O -0.55 -20.24 12.91 -3.03 -0.04 -20.28 16 24 C -0.08 -2.07 0.87 -52.92 -0.05 -2.11 16 25 C -0.12 -2.54 7.76 71.98 0.56 -1.98 16 26 C -0.14 -3.03 8.37 71.98 0.60 -2.43 16 27 C -0.14 -3.62 8.37 71.98 0.60 -3.02 16 28 H 0.23 7.32 7.80 -4.41 -0.03 7.28 16 29 H 0.09 3.55 4.38 -2.39 -0.01 3.54 16 30 H 0.12 5.46 5.99 -2.38 -0.01 5.44 16 31 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 32 H 0.13 4.31 7.55 -2.91 -0.02 4.29 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.15 5.08 5.54 -2.91 -0.02 5.07 16 36 H 0.41 16.38 6.53 -92.71 -0.61 15.78 16 37 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 40 H 0.05 1.18 7.48 -2.39 -0.02 1.17 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.04 1.37 7.66 -2.39 -0.02 1.35 16 Total: -1.00 -68.51 373.11 6.64 -61.88 By element: Atomic # 1 Polarization: 45.32 SS G_CDS: 0.41 Total: 45.73 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 7.24 Total: -2.34 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -2.94 Total: -92.84 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -0.11 Total: -55.24 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -68.51 6.64 -61.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282086947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.106 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds