Wall clock time and date at job start Tue Mar 31 2020 15:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46974 * 2 1 4 4 C 1.50696 * 109.47231 * 120.00394 * 2 1 3 5 5 N 1.34667 * 125.80180 * 299.97147 * 4 2 1 6 6 H 0.97003 * 124.84853 * 0.04467 * 5 4 2 7 7 C 1.36448 * 110.29884 * 180.02562 * 5 4 2 8 8 C 1.34489 * 108.85695 * 359.97438 * 7 5 4 9 9 C 1.36769 * 125.80338 * 120.00082 * 4 2 1 10 10 C 1.47258 * 126.94144 * 0.23992 * 9 4 2 11 11 O 1.21624 * 120.00226 * 359.70796 * 10 9 4 12 12 N 1.34779 * 119.99960 * 179.71057 * 10 9 4 13 13 C 1.46500 * 120.00064 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47373 * 179.97438 * 13 12 10 15 15 C 1.38302 * 119.93528 * 269.72971 * 14 13 12 16 16 C 1.38097 * 120.06772 * 179.72507 * 15 14 13 17 17 C 1.38876 * 119.93262 * 0.56776 * 16 15 14 18 18 O 1.35751 * 120.06768 * 179.68783 * 17 16 15 19 19 C 1.34827 * 116.99744 * 174.48759 * 18 17 16 20 20 H 1.08000 * 120.00418 * 5.04792 * 19 18 17 21 21 C 1.38659 * 120.00066 * 185.05062 * 19 18 17 22 22 N 1.31555 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00245 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46814 * 60.00135 * 23 21 19 25 25 H 1.48494 * 109.47045 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47057 * 300.00640 * 23 21 19 27 27 C 1.38873 * 119.86256 * 359.70411 * 17 16 15 28 28 C 1.38099 * 119.93015 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.47208 * 299.99719 * 1 2 3 30 30 H 1.08993 * 109.47431 * 59.99800 * 1 2 3 31 31 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47208 * 240.00281 * 2 1 3 33 33 H 1.08993 * 109.47661 * 300.00062 * 3 2 1 34 34 H 1.08995 * 109.47219 * 60.00685 * 3 2 1 35 35 H 1.09006 * 109.47153 * 180.02562 * 3 2 1 36 36 H 1.07993 * 125.56873 * 179.97438 * 7 5 4 37 37 H 1.08001 * 126.83180 * 180.02562 * 8 7 5 38 38 H 0.97000 * 120.00075 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46943 * 300.00149 * 13 12 10 40 40 H 1.09007 * 109.47059 * 59.99876 * 13 12 10 41 41 H 1.07998 * 119.96116 * 359.97438 * 15 14 13 42 42 H 1.08004 * 120.03306 * 180.26974 * 16 15 14 43 43 H 0.96998 * 119.99917 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.03960 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96758 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7805 -0.3535 2.5042 6 1 1.2418 0.4081 2.7703 7 6 2.3910 -1.2163 3.3671 8 6 3.0495 -2.1488 2.6562 9 6 2.8219 -1.8271 1.2431 10 6 3.3433 -2.5558 0.0745 11 8 3.0738 -2.1758 -1.0490 12 7 4.1191 -3.6439 0.2499 13 6 4.6383 -4.3685 -0.9127 14 6 5.4704 -5.5353 -0.4469 15 6 6.8280 -5.3748 -0.2374 16 6 7.5922 -6.4407 0.1949 17 6 6.9983 -7.6779 0.4079 18 8 7.7481 -8.7292 0.8268 19 6 7.0921 -9.8690 1.1238 20 1 6.0292 -9.9423 0.9467 21 6 7.7820 -10.9474 1.6565 22 7 9.0766 -10.8580 1.8727 23 14 6.8730 -12.5264 2.0687 24 1 6.2478 -13.0733 0.8377 25 1 7.8298 -13.5185 2.6213 26 1 5.8186 -12.2424 3.0750 27 6 5.6359 -7.8373 0.1913 28 6 4.8761 -6.7661 -0.2357 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 2.3519 -1.1595 4.4448 37 1 3.6303 -2.9709 3.0477 38 1 4.3343 -3.9468 1.1459 39 1 3.8061 -4.7327 -1.5151 40 1 5.2552 -3.6991 -1.5123 41 1 7.2902 -4.4137 -0.4081 42 1 8.6516 -6.3136 0.3626 43 1 9.5593 -11.6125 2.2451 44 1 5.1712 -8.7983 0.3556 45 1 3.8164 -6.8894 -0.4040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285305321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:42 Heat of formation + Delta-G solvation = -10.789434 kcal Electronic energy + Delta-G solvation = -26368.112501 eV Core-core repulsion = 22544.384343 eV Total energy + Delta-G solvation = -3823.728158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.51298 -39.32526 -38.70660 -36.78048 -35.48690 -34.16755 -32.34783 -31.37762 -30.23428 -29.65349 -28.69437 -27.47250 -25.96567 -24.88234 -22.75793 -22.00968 -21.89520 -20.72027 -20.36688 -19.49659 -18.03543 -17.71626 -17.04197 -16.07457 -15.68976 -15.25001 -14.80859 -14.74612 -14.60127 -14.41854 -14.20815 -14.09189 -13.67650 -13.59250 -13.33315 -13.24768 -13.16723 -12.76428 -12.71203 -12.60968 -12.52852 -12.01835 -11.64474 -11.47559 -11.45263 -11.31643 -11.10152 -10.89940 -10.75370 -10.65189 -10.47893 -9.64677 -9.39355 -9.05805 -8.87564 -8.76637 -8.33529 -8.23802 -7.28348 -6.49990 -4.08871 1.68855 2.13003 2.17501 2.28717 2.94509 3.10890 3.11469 3.14662 3.64664 3.71081 3.92988 4.39096 4.55701 4.63504 4.82929 4.87405 5.04970 5.08900 5.17744 5.22000 5.23635 5.24889 5.35133 5.46978 5.49588 5.53934 5.67267 5.72004 5.74745 5.86863 5.87070 5.93839 6.00837 6.16426 6.19167 6.39676 6.58408 6.64226 6.72826 6.79279 6.85166 6.99774 7.18553 7.23470 7.32441 7.38869 7.75376 7.84697 7.94770 8.50831 8.95311 9.64090 10.67537 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002092 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.514809 B =13381.179228 C =13786.802440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.552 5.552 6 H 0.413 0.587 7 C -0.019 4.019 8 C -0.166 4.166 9 C -0.232 4.232 10 C 0.588 3.412 11 O -0.560 6.560 12 N -0.717 5.717 13 C 0.181 3.819 14 C -0.212 4.212 15 C -0.054 4.054 16 C -0.195 4.195 17 C 0.160 3.840 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.237 4.237 28 C -0.051 4.051 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.401 0.599 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 20.753 1.598 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.004 4.004 5 N -0.146 5.146 6 H 0.249 0.751 7 C -0.146 4.146 8 C -0.190 4.190 9 C -0.242 4.242 10 C 0.377 3.623 11 O -0.441 6.441 12 N -0.367 5.367 13 C 0.058 3.942 14 C -0.214 4.214 15 C -0.073 4.073 16 C -0.215 4.215 17 C 0.105 3.895 18 O -0.077 6.077 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.256 4.256 28 C -0.070 4.070 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.164 0.836 38 H 0.236 0.764 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.145 0.855 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.907 20.885 0.994 25.679 hybrid contribution -0.547 -0.761 1.044 1.402 sum -15.453 20.125 2.038 25.455 Atomic orbital electron populations 1.21826 0.94386 1.02299 1.01588 1.20253 0.95613 0.95819 0.95474 1.21826 1.01748 0.94932 1.01587 1.20245 0.98781 0.95928 0.85424 1.41526 1.42077 1.25602 1.05444 0.75097 1.21707 1.02696 0.94466 0.95776 1.22099 1.04246 1.01186 0.91470 1.20193 1.09770 1.01021 0.93216 1.17385 0.77652 0.79711 0.87598 1.90656 1.60338 1.67959 1.25117 1.46097 1.51314 1.28708 1.10580 1.19952 0.96226 0.90973 0.87025 1.19239 0.94165 0.94696 1.13257 1.20538 0.92852 0.97245 0.96688 1.20212 1.00154 0.91166 1.09932 1.19434 0.90120 0.88385 0.91532 1.83978 1.34161 1.18065 1.71472 1.21301 0.93991 0.88437 1.43200 0.89001 1.25312 0.95877 0.99099 0.96194 1.70027 1.07019 1.31927 1.40495 0.85770 0.78715 0.79749 0.79156 1.19441 1.20246 1.19452 1.21152 0.94278 1.00087 1.10093 1.20649 0.98298 0.92010 0.96020 0.93496 0.91749 0.92151 0.85468 0.91750 0.93496 0.92149 0.81442 0.83609 0.76406 0.91664 0.91631 0.86952 0.86413 0.91873 0.85461 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 2 C -0.05 -0.50 3.24 -91.77 -0.30 -0.80 16 3 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 4 C 0.11 1.19 5.68 -81.88 -0.47 0.73 16 5 N -0.55 -4.20 5.90 -9.11 -0.05 -4.25 16 6 H 0.41 1.90 8.96 -40.82 -0.37 1.53 16 7 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 8 C -0.17 -1.72 10.56 -37.49 -0.40 -2.12 16 9 C -0.23 -2.90 6.29 -103.35 -0.65 -3.55 16 10 C 0.59 8.65 7.81 -12.59 -0.10 8.55 16 11 O -0.56 -9.51 14.47 5.26 0.08 -9.43 16 12 N -0.72 -9.93 5.54 -62.62 -0.35 -10.28 16 13 C 0.18 2.66 5.80 -5.20 -0.03 2.63 16 14 C -0.21 -3.50 5.25 -104.58 -0.55 -4.05 16 15 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 16 C -0.20 -3.99 9.99 -39.40 -0.39 -4.39 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.17 -4.86 9.76 0.05 0.00 -4.86 16 19 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.82 13.67 55.48 0.76 -24.07 16 23 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.24 -4.97 9.17 -39.40 -0.36 -5.33 16 28 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.13 1.57 5.50 -51.93 -0.29 1.28 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.15 1.35 7.70 -52.49 -0.40 0.95 16 38 H 0.40 5.12 7.59 -40.82 -0.31 4.81 16 39 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.07 0.97 8.08 -51.92 -0.42 0.55 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -32.34 381.41 -8.57 -40.91 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.14 Total: 9.89 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -3.59 Total: -18.78 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.36 Total: -38.60 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.34 -8.57 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285305321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.118 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds