Wall clock time and date at job start Tue Mar 31 2020 15:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46974 * 2 1 4 4 C 1.50696 * 109.47231 * 120.00394 * 2 1 3 5 5 N 1.34667 * 125.80180 * 299.97147 * 4 2 1 6 6 H 0.97003 * 124.84853 * 0.04467 * 5 4 2 7 7 C 1.36448 * 110.29884 * 180.02562 * 5 4 2 8 8 C 1.34489 * 108.85695 * 359.97438 * 7 5 4 9 9 C 1.36769 * 125.80338 * 120.00082 * 4 2 1 10 10 C 1.47258 * 126.94144 * 0.23992 * 9 4 2 11 11 O 1.21624 * 120.00226 * 359.70796 * 10 9 4 12 12 N 1.34779 * 119.99960 * 179.71057 * 10 9 4 13 13 C 1.46500 * 120.00064 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47373 * 179.97438 * 13 12 10 15 15 C 1.38302 * 119.93528 * 269.72971 * 14 13 12 16 16 C 1.38097 * 120.06772 * 179.72507 * 15 14 13 17 17 C 1.38876 * 119.93262 * 0.56776 * 16 15 14 18 18 O 1.35751 * 120.06768 * 179.68783 * 17 16 15 19 19 C 1.34827 * 116.99744 * 174.48759 * 18 17 16 20 20 H 1.08000 * 120.00418 * 5.04792 * 19 18 17 21 21 C 1.38659 * 120.00066 * 185.05062 * 19 18 17 22 22 N 1.31555 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00245 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46814 * 60.00135 * 23 21 19 25 25 H 1.48494 * 109.47045 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47057 * 300.00640 * 23 21 19 27 27 C 1.38873 * 119.86256 * 359.70411 * 17 16 15 28 28 C 1.38099 * 119.93015 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.47208 * 299.99719 * 1 2 3 30 30 H 1.08993 * 109.47431 * 59.99800 * 1 2 3 31 31 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47208 * 240.00281 * 2 1 3 33 33 H 1.08993 * 109.47661 * 300.00062 * 3 2 1 34 34 H 1.08995 * 109.47219 * 60.00685 * 3 2 1 35 35 H 1.09006 * 109.47153 * 180.02562 * 3 2 1 36 36 H 1.07993 * 125.56873 * 179.97438 * 7 5 4 37 37 H 1.08001 * 126.83180 * 180.02562 * 8 7 5 38 38 H 0.97000 * 120.00075 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46943 * 300.00149 * 13 12 10 40 40 H 1.09007 * 109.47059 * 59.99876 * 13 12 10 41 41 H 1.07998 * 119.96116 * 359.97438 * 15 14 13 42 42 H 1.08004 * 120.03306 * 180.26974 * 16 15 14 43 43 H 0.96998 * 119.99917 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.03960 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96758 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7805 -0.3535 2.5042 6 1 1.2418 0.4081 2.7703 7 6 2.3910 -1.2163 3.3671 8 6 3.0495 -2.1488 2.6562 9 6 2.8219 -1.8271 1.2431 10 6 3.3433 -2.5558 0.0745 11 8 3.0738 -2.1758 -1.0490 12 7 4.1191 -3.6439 0.2499 13 6 4.6383 -4.3685 -0.9127 14 6 5.4704 -5.5353 -0.4469 15 6 6.8280 -5.3748 -0.2374 16 6 7.5922 -6.4407 0.1949 17 6 6.9983 -7.6779 0.4079 18 8 7.7481 -8.7292 0.8268 19 6 7.0921 -9.8690 1.1238 20 1 6.0292 -9.9423 0.9467 21 6 7.7820 -10.9474 1.6565 22 7 9.0766 -10.8580 1.8727 23 14 6.8730 -12.5264 2.0687 24 1 6.2478 -13.0733 0.8377 25 1 7.8298 -13.5185 2.6213 26 1 5.8186 -12.2424 3.0750 27 6 5.6359 -7.8373 0.1913 28 6 4.8761 -6.7661 -0.2357 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 2.3519 -1.1595 4.4448 37 1 3.6303 -2.9709 3.0477 38 1 4.3343 -3.9468 1.1459 39 1 3.8061 -4.7327 -1.5151 40 1 5.2552 -3.6991 -1.5123 41 1 7.2902 -4.4137 -0.4081 42 1 8.6516 -6.3136 0.3626 43 1 9.5593 -11.6125 2.2451 44 1 5.1712 -8.7983 0.3556 45 1 3.8164 -6.8894 -0.4040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285305321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:41 Heat of formation + Delta-G solvation = -31.126105 kcal Electronic energy + Delta-G solvation = -26368.994365 eV Core-core repulsion = 22544.384343 eV Total energy + Delta-G solvation = -3824.610022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.26052 -40.89320 -39.99814 -38.42934 -36.21890 -35.41973 -34.26009 -32.33405 -31.82248 -30.99233 -29.43111 -28.05489 -27.69379 -26.43021 -23.75798 -23.63669 -22.64415 -22.12921 -21.20607 -20.56116 -19.84964 -18.85530 -18.42562 -17.15984 -16.83040 -16.59565 -16.30474 -15.98515 -15.68893 -15.54517 -15.47268 -15.22665 -15.06494 -14.92564 -14.51328 -14.36165 -14.17616 -13.99580 -13.76487 -13.64019 -13.43194 -13.24514 -13.05636 -13.00771 -12.53455 -12.37677 -12.22666 -12.14305 -12.12085 -12.04364 -11.81680 -11.19795 -10.85133 -10.69545 -10.08095 -9.80884 -9.67312 -9.09246 -9.00252 -8.47202 -6.15478 0.55787 0.58223 0.79748 1.36346 1.46295 1.52276 1.58123 2.17964 2.21724 2.59199 2.62895 2.90955 3.20249 3.49062 3.71996 3.87089 3.99061 4.03861 4.13580 4.18070 4.22921 4.35550 4.47045 4.52508 4.56961 4.57929 4.71623 4.76174 4.81188 4.87192 4.90894 5.00135 5.04723 5.12859 5.15048 5.19763 5.27208 5.33789 5.41771 5.52658 5.59690 5.69462 5.76520 5.83034 6.02121 6.03955 6.16353 6.64925 6.76437 6.97330 7.40361 7.76533 8.75325 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002092 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.514809 B =13381.179228 C =13786.802440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C -0.139 4.139 4 C 0.115 3.885 5 N -0.536 5.536 6 H 0.430 0.570 7 C -0.002 4.002 8 C -0.190 4.190 9 C -0.270 4.270 10 C 0.584 3.416 11 O -0.589 6.589 12 N -0.713 5.713 13 C 0.186 3.814 14 C -0.181 4.181 15 C -0.044 4.044 16 C -0.203 4.203 17 C 0.123 3.877 18 O -0.228 6.228 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.022 4.022 22 N -0.919 5.919 23 Si 1.018 2.982 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.257 1.257 27 C -0.242 4.242 28 C -0.046 4.046 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.205 0.795 37 H 0.150 0.850 38 H 0.407 0.593 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.068 23.145 2.424 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.005 4.005 5 N -0.132 5.132 6 H 0.270 0.730 7 C -0.129 4.129 8 C -0.214 4.214 9 C -0.280 4.280 10 C 0.375 3.625 11 O -0.473 6.473 12 N -0.364 5.364 13 C 0.063 3.937 14 C -0.182 4.182 15 C -0.063 4.063 16 C -0.223 4.223 17 C 0.072 3.928 18 O -0.134 6.134 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.837 3.163 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.181 1.181 27 C -0.262 4.262 28 C -0.065 4.065 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.221 0.779 37 H 0.168 0.832 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.163 0.837 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.895 23.341 1.822 29.468 hybrid contribution 0.216 -1.114 0.682 1.324 sum -17.680 22.227 2.505 28.511 Atomic orbital electron populations 1.21794 0.92847 1.01775 1.03199 1.20192 0.96843 0.96449 0.93845 1.21793 1.00735 0.93880 1.03196 1.20351 0.98074 0.95380 0.86709 1.41521 1.41482 1.25832 1.04374 0.73028 1.22240 1.00545 0.92944 0.97194 1.22268 1.05769 1.02591 0.90742 1.20222 1.11863 1.02456 0.93424 1.17756 0.77212 0.79576 0.87999 1.90644 1.61451 1.68748 1.26427 1.45946 1.51331 1.28641 1.10461 1.19861 0.96121 0.90244 0.87431 1.19503 0.94049 0.94875 1.09808 1.20866 0.92958 0.97529 0.94924 1.20438 1.00618 0.91091 1.10114 1.19971 0.91389 0.88653 0.92820 1.83948 1.35779 1.19280 1.74421 1.21792 0.94714 0.88962 1.43559 0.87950 1.26590 0.96774 1.02785 0.95836 1.70174 1.09045 1.33324 1.43084 0.84658 0.77516 0.74727 0.79404 1.18219 1.19711 1.18091 1.21234 0.93597 1.00958 1.10371 1.20928 0.99515 0.91291 0.94747 0.91259 0.90800 0.93705 0.88760 0.90803 0.91262 0.93680 0.77859 0.83187 0.75712 0.91305 0.91066 0.83661 0.86588 0.91800 0.86081 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.18 71.98 0.66 -1.15 16 2 C -0.05 -0.95 3.24 -11.54 -0.04 -0.99 16 3 C -0.14 -1.81 9.18 71.98 0.66 -1.14 16 4 C 0.11 2.18 5.68 41.78 0.24 2.42 16 5 N -0.54 -6.39 5.90 -182.73 -1.08 -7.47 16 6 H 0.43 2.17 8.96 -92.71 -0.83 1.34 16 7 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 8 C -0.19 -3.55 10.56 23.62 0.25 -3.30 16 9 C -0.27 -6.42 6.29 -19.04 -0.12 -6.54 16 10 C 0.58 16.71 7.81 86.61 0.68 17.39 16 11 O -0.59 -19.94 14.47 -4.11 -0.06 -20.00 16 12 N -0.71 -18.60 5.54 -470.26 -2.61 -21.21 16 13 C 0.19 5.06 5.80 85.63 0.50 5.56 16 14 C -0.18 -5.58 5.25 -19.83 -0.10 -5.69 16 15 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 16 C -0.20 -8.40 9.99 22.39 0.22 -8.17 16 17 C 0.12 5.96 6.65 22.57 0.15 6.11 16 18 O -0.23 -13.50 9.76 -22.72 -0.22 -13.72 16 19 C -0.41 -23.73 9.49 67.92 0.64 -23.09 16 20 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 21 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 22 N -0.92 -55.79 13.67 21.61 0.30 -55.49 16 23 Si 1.02 42.25 29.55 68.60 2.03 44.28 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 27 C -0.24 -10.24 9.17 22.39 0.21 -10.04 16 28 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 2.34 5.50 -2.39 -0.01 2.33 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.15 2.53 7.70 -2.91 -0.02 2.50 16 38 H 0.41 9.69 7.59 -92.71 -0.70 8.98 16 39 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.07 1.92 8.08 -2.38 -0.02 1.90 16 41 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 45 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -75.76 381.41 3.68 -72.08 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.50 Total: 32.55 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 5.83 Total: -31.02 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.39 Total: -84.17 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.28 Total: -33.72 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.76 3.68 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285305321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.952 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds