Wall clock time and date at job start Tue Mar 31 2020 15:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 C 1.52995 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.54179 * 113.11040 * 67.39968 * 4 3 2 6 6 C 1.55106 * 102.20602 * 82.04194 * 5 4 3 7 7 C 1.54487 * 104.89510 * 22.17110 * 6 5 4 8 8 N 1.46737 * 106.40662 * 3.51881 * 7 6 5 9 9 C 1.33642 * 149.00099 * 144.56091 * 8 7 6 10 10 O 1.21526 * 124.09062 * 21.38018 * 9 8 7 11 11 N 1.34223 * 111.86046 * 201.54548 * 9 8 7 12 12 C 1.39598 * 124.25464 * 173.24939 * 11 9 8 13 13 C 1.39408 * 119.82939 * 173.42719 * 12 11 9 14 14 C 1.36400 * 120.17819 * 180.23062 * 13 12 11 15 15 C 1.40858 * 119.81857 * 359.51997 * 14 13 12 16 16 C 1.41177 * 120.16528 * 180.22527 * 15 14 13 17 17 H 1.08004 * 119.99970 * 208.22096 * 16 15 14 18 18 C 1.39911 * 120.00426 * 28.23240 * 16 15 14 19 19 N 1.30864 * 119.99729 * 13.37301 * 18 16 15 20 20 Si 1.86798 * 120.00236 * 193.38120 * 18 16 15 21 21 H 1.48499 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47072 * 119.99270 * 20 18 16 23 23 H 1.48493 * 109.47297 * 239.99494 * 20 18 16 24 24 C 1.40849 * 119.65727 * 0.47941 * 15 14 13 25 25 C 1.36402 * 119.82286 * 359.75057 * 24 15 14 26 26 C 1.35163 * 111.48885 * 352.98186 * 11 9 8 27 27 O 1.21237 * 127.34487 * 175.43783 * 26 11 9 28 28 H 1.09007 * 109.47188 * 59.99686 * 1 2 3 29 29 H 1.09002 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47405 * 300.00032 * 1 2 3 31 31 H 1.09000 * 109.47405 * 239.99968 * 2 1 3 32 32 H 1.09005 * 109.46724 * 120.00079 * 2 1 3 33 33 H 1.09000 * 109.46844 * 59.99624 * 3 2 1 34 34 H 1.08998 * 109.46870 * 299.99832 * 3 2 1 35 35 H 1.08997 * 110.85880 * 200.22387 * 5 4 3 36 36 H 1.09002 * 110.85196 * 323.87054 * 5 4 3 37 37 H 1.08998 * 110.35780 * 263.31036 * 6 5 4 38 38 H 1.09004 * 110.43987 * 141.06877 * 6 5 4 39 39 H 1.09001 * 110.06561 * 244.28242 * 7 6 5 40 40 H 1.08997 * 110.06968 * 122.75580 * 7 6 5 41 41 H 1.08000 * 119.90605 * 359.95499 * 13 12 11 42 42 H 1.07994 * 120.08910 * 179.71860 * 14 13 12 43 43 H 0.97002 * 119.99752 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.08528 * 179.77547 * 24 15 14 45 45 H 1.08002 * 119.90917 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.1757 0.8974 -1.3082 6 6 4.1117 2.1357 -2.2399 7 6 4.0404 3.3480 -1.2849 8 7 4.1502 2.8104 0.0761 9 6 4.5936 2.9470 1.3294 10 8 4.8886 4.0119 1.8353 11 7 4.6774 1.7659 1.9614 12 6 5.2350 1.5909 3.2292 13 6 5.1519 0.3494 3.8579 14 6 5.6901 0.1717 5.0986 15 6 6.3400 1.2441 5.7402 16 6 6.9038 1.0671 7.0223 17 1 6.9851 1.9064 7.6971 18 6 7.3576 -0.1956 7.4188 19 7 7.5051 -1.1462 6.5315 20 14 7.7526 -0.5248 9.2146 21 1 7.5045 0.7048 10.0095 22 1 6.8889 -1.6229 9.7183 23 1 9.1788 -0.9178 9.3438 24 6 6.4197 2.4953 5.0983 25 6 5.8724 2.6583 3.8596 26 6 4.1487 0.7682 1.2184 27 8 4.1419 -0.4165 1.4761 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.2070 0.5793 -1.1556 36 1 3.5714 0.0816 -1.7051 37 1 3.2206 2.0935 -2.8662 38 1 5.0070 2.1930 -2.8590 39 1 3.0886 3.8649 -1.4072 40 1 4.8659 4.0309 -1.4850 41 1 4.6561 -0.4727 3.3631 42 1 5.6210 -0.7893 5.5862 43 1 7.8194 -2.0217 6.8065 44 1 6.9133 3.3233 5.5855 45 1 5.9330 3.6170 3.3660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286298530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:33 Heat of formation + Delta-G solvation = -3.326411 kcal Electronic energy + Delta-G solvation = -28645.826292 eV Core-core repulsion = 24822.421755 eV Total energy + Delta-G solvation = -3823.404537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.70649 -38.69239 -38.32935 -37.02872 -35.30030 -34.62138 -33.62826 -31.70432 -30.26453 -29.52362 -28.92115 -26.95560 -25.23592 -24.56971 -22.45589 -22.25211 -21.79876 -20.41724 -19.83705 -19.61719 -17.40747 -17.03455 -16.84042 -16.27584 -16.15029 -15.45523 -15.19982 -14.86815 -14.78095 -14.33248 -14.09355 -13.98544 -13.43033 -13.14914 -13.06424 -12.73293 -12.64496 -12.45717 -12.24785 -12.15512 -11.94830 -11.82660 -11.65861 -11.51357 -11.32021 -11.17427 -11.07584 -10.96389 -10.80012 -10.72685 -10.38933 -10.05674 -9.87960 -9.48998 -9.17377 -9.06171 -8.83797 -7.59457 -7.10497 -6.77716 -4.37014 1.85772 2.25546 2.52953 3.01755 3.05989 3.07896 3.12472 3.29949 3.52563 3.91311 3.94738 4.08163 4.46104 4.57674 4.62556 4.68259 4.83313 4.89924 4.96294 5.20196 5.23469 5.35043 5.44459 5.44513 5.52287 5.58690 5.65702 5.67305 5.72051 5.85513 5.94727 6.05104 6.12597 6.20414 6.26763 6.39426 6.66888 6.97833 7.02811 7.08844 7.22341 7.56991 7.60505 7.63634 7.86811 8.00723 8.05729 8.23921 8.48129 8.58404 8.83753 8.91775 10.16089 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.003329 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.563679 B = 8408.360609 C = 9172.072197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.097 4.097 4 C 0.073 3.927 5 C -0.109 4.109 6 C -0.135 4.135 7 C 0.161 3.839 8 N -0.641 5.641 9 C 0.733 3.267 10 O -0.528 6.528 11 N -0.489 5.489 12 C -0.025 4.025 13 C -0.104 4.104 14 C -0.150 4.150 15 C 0.110 3.890 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.073 3.927 19 N -0.792 5.792 20 Si 0.912 3.088 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.213 4.213 25 C -0.093 4.093 26 C 0.521 3.479 27 O -0.461 6.461 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.281 0.719 44 H 0.100 0.900 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 1.970 -17.090 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.136 4.136 4 C -0.018 4.018 5 C -0.147 4.147 6 C -0.174 4.174 7 C 0.041 3.959 8 N -0.382 5.382 9 C 0.438 3.562 10 O -0.402 6.402 11 N -0.225 5.225 12 C -0.114 4.114 13 C -0.124 4.124 14 C -0.170 4.170 15 C 0.107 3.893 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.145 4.145 19 N -0.417 5.417 20 Si 0.736 3.264 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.199 1.199 24 C -0.233 4.233 25 C -0.112 4.112 26 C 0.308 3.692 27 O -0.331 6.331 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.478 1.968 -16.612 19.227 hybrid contribution 0.374 -0.183 0.793 0.896 sum -9.104 1.785 -15.819 18.338 Atomic orbital electron populations 1.21734 0.95343 1.01867 1.01691 1.21600 0.96064 0.95301 1.03752 1.21548 0.89432 0.98897 1.03683 1.22707 0.96769 0.86205 0.96088 1.22484 1.02144 0.97998 0.92087 1.22871 1.03709 0.93318 0.97472 1.21769 1.02520 0.96100 0.75548 1.48430 1.61728 1.18898 1.09161 1.14898 0.78106 0.83830 0.79370 1.90844 1.53746 1.27226 1.68358 1.43597 1.53512 1.07686 1.17681 1.17273 1.12434 0.97336 0.84396 1.20683 1.01132 0.94422 0.96128 1.20949 1.00803 1.00516 0.94762 1.17782 0.88158 0.90839 0.92490 1.19641 1.34377 0.94970 0.99412 0.90144 1.25958 0.93393 0.95585 0.99580 1.69832 1.32986 1.03839 1.35040 0.86202 0.78585 0.79441 0.82164 1.18360 1.19664 1.19939 1.20687 1.08254 0.98644 0.95685 1.20738 0.97197 0.97390 0.95921 1.20463 0.77977 0.85988 0.84775 1.90672 1.55106 1.13599 1.73763 0.92842 0.92427 0.92696 0.91281 0.90457 0.90938 0.89908 0.90033 0.88744 0.89609 0.89784 0.90682 0.90000 0.86327 0.85810 0.90770 0.88202 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.88 16 2 C -0.13 -1.30 5.53 -26.74 -0.15 -1.44 16 3 C -0.10 -1.01 4.65 -26.73 -0.12 -1.14 16 4 C 0.07 0.94 0.53 -131.07 -0.07 0.87 16 5 C -0.11 -1.04 6.08 -25.00 -0.15 -1.19 16 6 C -0.14 -0.88 6.66 -24.84 -0.17 -1.05 16 7 C 0.16 1.44 7.18 -3.13 -0.02 1.42 16 8 N -0.64 -9.07 3.88 -162.85 -0.63 -9.70 16 9 C 0.73 14.16 8.42 -88.42 -0.74 13.41 16 10 O -0.53 -11.66 14.76 5.34 0.08 -11.58 16 11 N -0.49 -10.16 2.83 -64.53 -0.18 -10.34 16 12 C -0.03 -0.62 6.58 -83.45 -0.55 -1.17 16 13 C -0.10 -2.62 9.23 -39.81 -0.37 -2.99 16 14 C -0.15 -4.04 8.61 -39.25 -0.34 -4.37 16 15 C 0.11 3.00 5.55 -106.80 -0.59 2.41 16 16 C -0.45 -12.12 9.04 -37.84 -0.34 -12.47 16 17 H 0.08 2.05 7.88 -52.48 -0.41 1.64 16 18 C 0.07 1.83 5.20 -17.34 -0.09 1.74 16 19 N -0.79 -20.61 10.94 55.55 0.61 -20.00 16 20 Si 0.91 18.69 29.58 -169.99 -5.03 13.66 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.21 -5.47 9.74 -39.26 -0.38 -5.86 16 25 C -0.09 -2.32 9.16 -39.81 -0.36 -2.68 16 26 C 0.52 9.37 6.46 -10.79 -0.07 9.30 16 27 O -0.46 -9.11 13.74 5.59 0.08 -9.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.60 6.69 -51.93 -0.35 0.25 16 32 H 0.08 1.00 6.50 -51.93 -0.34 0.66 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 35 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 36 H 0.09 0.73 6.58 -51.93 -0.34 0.39 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.12 2.90 5.40 -52.49 -0.28 2.61 16 42 H 0.12 3.39 6.27 -52.49 -0.33 3.06 16 43 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 44 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 45 H 0.13 3.07 5.27 -52.49 -0.28 2.79 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -31.55 357.32 -9.93 -41.48 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.08 Total: 6.21 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -4.15 Total: -6.08 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.21 Total: -40.05 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.16 Total: -20.61 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.55 -9.93 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286298530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.156 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds