Wall clock time and date at job start Tue Mar 31 2020 15:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 C 1.52995 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.54179 * 113.11040 * 67.39968 * 4 3 2 6 6 C 1.55106 * 102.20602 * 82.04194 * 5 4 3 7 7 C 1.54487 * 104.89510 * 22.17110 * 6 5 4 8 8 N 1.46737 * 106.40662 * 3.51881 * 7 6 5 9 9 C 1.33642 * 149.00099 * 144.56091 * 8 7 6 10 10 O 1.21526 * 124.09062 * 21.38018 * 9 8 7 11 11 N 1.34223 * 111.86046 * 201.54548 * 9 8 7 12 12 C 1.39598 * 124.25464 * 173.24939 * 11 9 8 13 13 C 1.39408 * 119.82939 * 173.42719 * 12 11 9 14 14 C 1.36400 * 120.17819 * 180.23062 * 13 12 11 15 15 C 1.40858 * 119.81857 * 359.51997 * 14 13 12 16 16 C 1.41177 * 120.16528 * 180.22527 * 15 14 13 17 17 H 1.08004 * 119.99970 * 208.22096 * 16 15 14 18 18 C 1.39911 * 120.00426 * 28.23240 * 16 15 14 19 19 N 1.30864 * 119.99729 * 13.37301 * 18 16 15 20 20 Si 1.86798 * 120.00236 * 193.38120 * 18 16 15 21 21 H 1.48499 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47072 * 119.99270 * 20 18 16 23 23 H 1.48493 * 109.47297 * 239.99494 * 20 18 16 24 24 C 1.40849 * 119.65727 * 0.47941 * 15 14 13 25 25 C 1.36402 * 119.82286 * 359.75057 * 24 15 14 26 26 C 1.35163 * 111.48885 * 352.98186 * 11 9 8 27 27 O 1.21237 * 127.34487 * 175.43783 * 26 11 9 28 28 H 1.09007 * 109.47188 * 59.99686 * 1 2 3 29 29 H 1.09002 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47405 * 300.00032 * 1 2 3 31 31 H 1.09000 * 109.47405 * 239.99968 * 2 1 3 32 32 H 1.09005 * 109.46724 * 120.00079 * 2 1 3 33 33 H 1.09000 * 109.46844 * 59.99624 * 3 2 1 34 34 H 1.08998 * 109.46870 * 299.99832 * 3 2 1 35 35 H 1.08997 * 110.85880 * 200.22387 * 5 4 3 36 36 H 1.09002 * 110.85196 * 323.87054 * 5 4 3 37 37 H 1.08998 * 110.35780 * 263.31036 * 6 5 4 38 38 H 1.09004 * 110.43987 * 141.06877 * 6 5 4 39 39 H 1.09001 * 110.06561 * 244.28242 * 7 6 5 40 40 H 1.08997 * 110.06968 * 122.75580 * 7 6 5 41 41 H 1.08000 * 119.90605 * 359.95499 * 13 12 11 42 42 H 1.07994 * 120.08910 * 179.71860 * 14 13 12 43 43 H 0.97002 * 119.99752 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.08528 * 179.77547 * 24 15 14 45 45 H 1.08002 * 119.90917 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.1757 0.8974 -1.3082 6 6 4.1117 2.1357 -2.2399 7 6 4.0404 3.3480 -1.2849 8 7 4.1502 2.8104 0.0761 9 6 4.5936 2.9470 1.3294 10 8 4.8886 4.0119 1.8353 11 7 4.6774 1.7659 1.9614 12 6 5.2350 1.5909 3.2292 13 6 5.1519 0.3494 3.8579 14 6 5.6901 0.1717 5.0986 15 6 6.3400 1.2441 5.7402 16 6 6.9038 1.0671 7.0223 17 1 6.9851 1.9064 7.6971 18 6 7.3576 -0.1956 7.4188 19 7 7.5051 -1.1462 6.5315 20 14 7.7526 -0.5248 9.2146 21 1 7.5045 0.7048 10.0095 22 1 6.8889 -1.6229 9.7183 23 1 9.1788 -0.9178 9.3438 24 6 6.4197 2.4953 5.0983 25 6 5.8724 2.6583 3.8596 26 6 4.1487 0.7682 1.2184 27 8 4.1419 -0.4165 1.4761 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.2070 0.5793 -1.1556 36 1 3.5714 0.0816 -1.7051 37 1 3.2206 2.0935 -2.8662 38 1 5.0070 2.1930 -2.8590 39 1 3.0886 3.8649 -1.4072 40 1 4.8659 4.0309 -1.4850 41 1 4.6561 -0.4727 3.3631 42 1 5.6210 -0.7893 5.5862 43 1 7.8194 -2.0217 6.8065 44 1 6.9133 3.3233 5.5855 45 1 5.9330 3.6170 3.3660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286298530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:32 Heat of formation + Delta-G solvation = -21.321133 kcal Electronic energy + Delta-G solvation = -28646.606602 eV Core-core repulsion = 24822.421755 eV Total energy + Delta-G solvation = -3824.184847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.05312 -40.14448 -39.83728 -38.69693 -36.86963 -35.58602 -35.33607 -32.99725 -31.68208 -31.23632 -30.46472 -27.95866 -26.89850 -25.82789 -23.89413 -23.70916 -22.81990 -21.95787 -21.37509 -20.75041 -19.36310 -18.64720 -18.12127 -17.64205 -17.32542 -17.12449 -16.64054 -16.05707 -15.95915 -15.63127 -15.40290 -15.12341 -14.87485 -14.68368 -14.61588 -14.16060 -13.95782 -13.86222 -13.54441 -13.40764 -13.17955 -13.02409 -12.86540 -12.83851 -12.69587 -12.59432 -12.22908 -12.11601 -11.97296 -11.79782 -11.72978 -11.59121 -11.48039 -11.17877 -11.00885 -10.69581 -10.09687 -9.65263 -9.07721 -8.69320 -6.40555 0.41252 0.65333 0.97218 0.99930 1.37533 1.41931 1.54123 1.90288 2.08895 2.18762 2.67788 2.85362 3.11914 3.57352 3.59887 3.64278 4.03615 4.10644 4.16223 4.21188 4.27307 4.33872 4.39041 4.45527 4.48988 4.66684 4.71028 4.77310 4.81536 4.88493 4.91424 4.95090 5.02254 5.11444 5.13389 5.21298 5.27510 5.29870 5.31668 5.44630 5.47939 5.60054 5.73336 5.87798 5.97159 6.17618 6.30062 6.36092 6.53357 6.82119 6.83550 7.03328 8.27646 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.003329 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.563679 B = 8408.360609 C = 9172.072197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.091 4.091 4 C 0.083 3.917 5 C -0.108 4.108 6 C -0.118 4.118 7 C 0.144 3.856 8 N -0.631 5.631 9 C 0.724 3.276 10 O -0.568 6.568 11 N -0.509 5.509 12 C -0.020 4.020 13 C -0.110 4.110 14 C -0.167 4.167 15 C 0.083 3.917 16 C -0.487 4.487 17 H 0.083 0.917 18 C 0.032 3.968 19 N -0.824 5.824 20 Si 0.991 3.009 21 H -0.256 1.256 22 H -0.263 1.263 23 H -0.264 1.264 24 C -0.223 4.223 25 C -0.100 4.100 26 C 0.509 3.491 27 O -0.486 6.486 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.061 0.939 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.291 0.709 44 H 0.110 0.890 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 2.153 -19.971 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.129 4.129 4 C -0.007 4.007 5 C -0.147 4.147 6 C -0.156 4.156 7 C 0.027 3.973 8 N -0.370 5.370 9 C 0.428 3.572 10 O -0.444 6.444 11 N -0.245 5.245 12 C -0.111 4.111 13 C -0.130 4.130 14 C -0.187 4.187 15 C 0.080 3.920 16 C -0.516 4.516 17 H 0.101 0.899 18 C -0.183 4.183 19 N -0.450 5.450 20 Si 0.811 3.189 21 H -0.179 1.179 22 H -0.187 1.187 23 H -0.189 1.189 24 C -0.243 4.243 25 C -0.119 4.119 26 C 0.299 3.701 27 O -0.358 6.358 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.864 2.149 -19.593 22.506 hybrid contribution 0.741 -0.251 1.527 1.716 sum -10.123 1.899 -18.066 20.795 Atomic orbital electron populations 1.21716 0.93861 1.02356 1.02384 1.21589 0.97313 0.94723 1.02916 1.21639 0.87002 0.99481 1.04800 1.23024 0.98206 0.84757 0.94760 1.22609 1.01171 1.00311 0.90600 1.22930 1.06675 0.89623 0.96333 1.22426 1.04397 0.97743 0.72771 1.48627 1.59834 1.19794 1.08782 1.15026 0.78368 0.82813 0.80960 1.90793 1.55856 1.28152 1.69644 1.43817 1.54189 1.09554 1.16973 1.17341 1.11143 0.96547 0.86049 1.20740 1.01214 0.95135 0.95890 1.20900 1.01984 1.00183 0.95596 1.18080 0.89023 0.91418 0.93435 1.19903 1.35781 0.96290 0.99609 0.89872 1.26892 0.92451 0.94629 1.04364 1.69886 1.33168 1.04540 1.37389 0.85023 0.78725 0.79414 0.75720 1.17925 1.18729 1.18896 1.20877 1.08616 0.98681 0.96162 1.20866 0.97353 0.97867 0.95824 1.21585 0.76973 0.85551 0.86041 1.90639 1.55710 1.14681 1.74755 0.90233 0.92136 0.93883 0.89088 0.94379 0.93111 0.85375 0.92039 0.86094 0.85480 0.88163 0.87693 0.89601 0.86049 0.87076 0.89836 0.87222 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.13 -2.27 5.53 30.59 0.17 -2.10 16 3 C -0.09 -1.64 4.65 30.59 0.14 -1.49 16 4 C 0.08 1.96 0.53 2.83 0.00 1.96 16 5 C -0.11 -1.68 6.08 31.72 0.19 -1.48 16 6 C -0.12 -0.87 6.66 31.82 0.21 -0.66 16 7 C 0.14 1.98 7.18 86.84 0.62 2.60 16 8 N -0.63 -16.77 3.88 -788.05 -3.06 -19.82 16 9 C 0.72 28.36 8.42 179.58 1.51 29.87 16 10 O -0.57 -25.73 14.76 -3.80 -0.06 -25.79 16 11 N -0.51 -21.90 2.83 -594.86 -1.69 -23.58 16 12 C -0.02 -1.04 6.58 38.47 0.25 -0.79 16 13 C -0.11 -5.89 9.23 22.12 0.20 -5.68 16 14 C -0.17 -9.50 8.61 22.48 0.19 -9.31 16 15 C 0.08 4.78 5.55 -21.28 -0.12 4.66 16 16 C -0.49 -27.00 9.04 23.40 0.21 -26.79 16 17 H 0.08 4.40 7.88 -2.91 -0.02 4.38 16 18 C 0.03 1.63 5.20 85.24 0.44 2.08 16 19 N -0.82 -44.28 10.94 21.82 0.24 -44.04 16 20 Si 0.99 38.69 29.58 68.60 2.03 40.72 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.22 -12.11 9.74 22.48 0.22 -11.89 16 25 C -0.10 -5.22 9.16 22.12 0.20 -5.02 16 26 C 0.51 18.66 6.46 87.61 0.57 19.23 16 27 O -0.49 -19.94 13.74 -2.90 -0.04 -19.98 16 28 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.22 6.69 -2.39 -0.02 1.20 16 32 H 0.04 0.98 6.50 -2.38 -0.02 0.97 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.13 1.21 7.64 -2.39 -0.02 1.19 16 35 H 0.06 1.23 8.01 -2.39 -0.02 1.21 16 36 H 0.12 1.27 6.58 -2.39 -0.02 1.26 16 37 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 6.32 5.40 -2.91 -0.02 6.30 16 42 H 0.11 6.49 6.27 -2.91 -0.02 6.48 16 43 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 44 H 0.11 5.54 8.06 -2.91 -0.02 5.52 16 45 H 0.13 6.68 5.27 -2.91 -0.02 6.66 16 Total: -1.00 -75.79 357.32 4.19 -71.60 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 1.02 Total: 27.05 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.74 Total: -6.15 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -4.51 Total: -87.45 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.10 Total: -45.76 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -75.79 4.19 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286298530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds