Wall clock time and date at job start Tue Mar 31 2020 14:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46821 * 2 1 4 4 C 1.36769 * 125.80389 * 269.99597 * 3 2 1 5 5 C 1.47256 * 126.94254 * 359.97438 * 4 3 2 6 6 O 1.21633 * 120.00059 * 359.70760 * 5 4 3 7 7 N 1.34776 * 120.00060 * 179.70502 * 5 4 3 8 8 C 1.46506 * 120.00039 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47222 * 179.72863 * 8 7 5 10 10 C 1.38303 * 119.92687 * 269.73074 * 9 8 7 11 11 C 1.38102 * 120.06272 * 179.72720 * 10 9 8 12 12 C 1.38877 * 119.93092 * 0.56459 * 11 10 9 13 13 O 1.35754 * 120.06908 * 179.68613 * 12 11 10 14 14 C 1.34835 * 117.00174 * 174.49085 * 13 12 11 15 15 H 1.07999 * 119.99479 * 5.05241 * 14 13 12 16 16 C 1.38646 * 119.99973 * 185.05815 * 14 13 12 17 17 N 1.31556 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99892 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47137 * 119.99888 * 18 16 14 21 21 H 1.48503 * 109.46700 * 239.99737 * 18 16 14 22 22 C 1.38877 * 119.86520 * 359.70939 * 12 11 10 23 23 C 1.38104 * 119.92688 * 359.97438 * 22 12 11 24 24 C 1.46691 * 106.11555 * 179.71757 * 4 3 2 25 25 C 1.34490 * 106.33011 * 0.26941 * 24 4 3 26 26 N 1.34661 * 125.79790 * 90.16877 * 3 2 1 27 27 C 1.46497 * 124.85308 * 0.02562 * 26 3 2 28 28 H 1.08993 * 109.47323 * 299.99545 * 1 2 3 29 29 H 1.09008 * 109.47226 * 59.99955 * 1 2 3 30 30 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46921 * 240.00057 * 2 1 3 32 32 H 1.08996 * 109.46862 * 120.00299 * 2 1 3 33 33 H 0.96997 * 119.99784 * 359.73361 * 7 5 4 34 34 H 1.08993 * 109.47241 * 299.73152 * 8 7 5 35 35 H 1.08999 * 109.46538 * 59.72920 * 8 7 5 36 36 H 1.07992 * 119.96935 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.03542 * 180.27868 * 11 10 9 38 38 H 0.96997 * 120.00219 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.03695 * 179.97438 * 22 12 11 40 40 H 1.07997 * 119.96206 * 180.02562 * 23 22 12 41 41 H 1.07997 * 126.83732 * 180.29373 * 24 4 3 42 42 H 1.07998 * 125.57009 * 179.97438 * 25 24 4 43 43 H 1.09001 * 109.47230 * 270.30945 * 27 26 3 44 44 H 1.08995 * 109.47314 * 30.31549 * 27 26 3 45 45 H 1.09004 * 109.47013 * 150.31453 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2990 2.1752 -1.1092 5 6 2.1541 1.7632 -2.5155 6 8 1.7642 0.6427 -2.7839 7 7 2.4533 2.6276 -3.5053 8 6 2.3096 2.2175 -4.9044 9 6 2.6986 3.3611 -5.8056 10 6 1.7416 4.2694 -6.2199 11 6 2.0961 5.3216 -7.0412 12 6 3.4128 5.4603 -7.4604 13 8 3.7631 6.4899 -8.2729 14 6 5.0750 6.6323 -8.5496 15 1 5.7839 5.8974 -8.1978 16 6 5.5139 7.7221 -9.2858 17 7 4.6503 8.6170 -9.7147 18 14 7.3314 7.9190 -9.6698 19 1 8.0877 6.7859 -9.0788 20 1 7.5278 7.9318 -11.1416 21 1 7.8234 9.1962 -9.0936 22 6 4.3703 4.5432 -7.0472 23 6 4.0108 3.4969 -6.2206 24 6 2.7528 3.4797 -0.6150 25 6 2.7288 3.4046 0.7276 26 7 2.2978 2.1624 1.0922 27 6 2.1404 1.7032 2.4744 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7604 3.5225 -3.2912 34 1 2.9574 1.3634 -5.1010 35 1 1.2733 1.9396 -5.0968 36 1 0.7169 4.1581 -5.8977 37 1 1.3492 6.0333 -7.3608 38 1 4.9573 9.3793 -10.2300 39 1 5.3950 4.6481 -7.3719 40 1 4.7550 2.7836 -5.8986 41 1 3.0471 4.3311 -1.2107 42 1 3.0057 4.1978 1.4062 43 1 1.1306 1.9265 2.8187 44 1 2.3109 0.6277 2.5217 45 1 2.8627 2.2139 3.1114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290248691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:25 Heat of formation + Delta-G solvation = 0.430528 kcal Electronic energy + Delta-G solvation = -26380.910116 eV Core-core repulsion = 22557.668492 eV Total energy + Delta-G solvation = -3823.241624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55575 -39.32307 -38.70721 -36.76766 -34.42039 -33.63016 -33.02597 -32.31148 -30.24163 -29.92061 -28.44856 -27.07976 -25.74354 -24.69843 -23.57283 -22.06082 -21.99666 -20.61499 -20.09497 -19.08744 -18.03076 -17.58264 -16.98765 -15.98710 -15.76840 -15.61534 -15.02274 -14.68048 -14.52651 -14.34243 -14.24943 -14.07040 -13.65981 -13.56296 -13.44132 -13.17207 -13.03665 -12.76799 -12.74142 -12.60715 -12.40685 -12.11118 -11.98557 -11.63433 -11.59613 -11.34964 -11.08407 -10.93405 -10.72360 -10.63014 -10.45251 -9.68358 -9.38013 -8.89459 -8.88003 -8.67617 -8.28253 -8.22886 -7.27589 -6.49845 -4.08594 1.70269 2.13421 2.18136 2.29384 2.58926 3.09608 3.11636 3.17241 3.68242 3.72242 3.93161 4.37571 4.44177 4.57359 4.68046 4.72233 4.84741 5.00948 5.05370 5.13817 5.16658 5.22913 5.31958 5.34272 5.40285 5.50744 5.63848 5.72940 5.76002 5.84536 5.87997 6.00552 6.05298 6.14587 6.17669 6.40521 6.63027 6.65226 6.74024 6.85696 6.90162 7.00811 7.03922 7.19606 7.33317 7.39568 7.76195 7.87789 7.95291 8.54463 8.95806 9.64729 10.67916 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002124 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.418563 B =13177.649837 C =13821.333351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C 0.105 3.895 4 C -0.232 4.232 5 C 0.587 3.413 6 O -0.559 6.559 7 N -0.718 5.718 8 C 0.181 3.819 9 C -0.211 4.211 10 C -0.055 4.055 11 C -0.195 4.195 12 C 0.160 3.840 13 O -0.175 6.175 14 C -0.392 4.392 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.237 4.237 23 C -0.051 4.051 24 C -0.165 4.165 25 C -0.021 4.021 26 N -0.446 5.446 27 C 0.068 3.932 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.401 0.599 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.166 0.834 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -12.563 22.855 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.012 4.012 4 C -0.242 4.242 5 C 0.376 3.624 6 O -0.440 6.440 7 N -0.368 5.368 8 C 0.059 3.941 9 C -0.213 4.213 10 C -0.073 4.073 11 C -0.215 4.215 12 C 0.105 3.895 13 O -0.078 6.078 14 C -0.468 4.468 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.256 4.256 23 C -0.070 4.070 24 C -0.189 4.189 25 C -0.147 4.147 26 N -0.122 5.122 27 C -0.074 4.074 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.164 0.836 42 H 0.183 0.817 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.740 -13.034 22.725 26.623 hybrid contribution 1.203 0.815 -0.023 1.454 sum -3.536 -12.219 22.702 26.023 Atomic orbital electron populations 1.21635 0.94162 1.01899 1.01970 1.20316 0.96575 0.89309 1.03949 1.20294 1.01145 0.94569 0.85158 1.20184 1.15891 0.95968 0.92147 1.17371 0.76654 0.84327 0.84040 1.90705 1.48223 1.20498 1.84534 1.46090 1.68023 1.16785 1.05937 1.19940 1.00859 0.94870 0.78452 1.19244 0.94439 1.00708 1.06883 1.20540 0.97921 0.93075 0.95805 1.20215 0.94567 1.01707 1.04965 1.19436 0.93115 0.88170 0.88739 1.83981 1.27640 1.41441 1.54708 1.21398 0.80535 1.09602 1.35278 0.88896 1.25312 1.00344 0.94625 0.96252 1.70045 1.34327 1.11324 1.33791 0.85634 0.80387 0.78773 0.78570 1.19049 1.20102 1.20102 1.21160 1.00584 0.98220 1.05631 1.20648 0.94737 0.96234 0.95377 1.22084 1.06057 0.97161 0.93592 1.21679 1.08653 0.88040 0.96289 1.43519 1.51145 1.11554 1.06016 1.22073 1.03216 1.01856 0.80222 0.93583 0.91739 0.92066 0.87526 0.91797 0.76457 0.91716 0.91670 0.86955 0.86415 0.91985 0.85452 0.87393 0.83564 0.81665 0.90780 0.89729 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.06 -0.62 5.58 -27.88 -0.16 -0.77 16 3 C 0.10 1.17 6.14 -81.88 -0.50 0.67 16 4 C -0.23 -3.02 6.29 -103.35 -0.65 -3.67 16 5 C 0.59 8.80 7.81 -12.60 -0.10 8.70 16 6 O -0.56 -9.61 14.81 5.25 0.08 -9.53 16 7 N -0.72 -10.13 5.54 -62.62 -0.35 -10.48 16 8 C 0.18 2.70 5.80 -5.19 -0.03 2.67 16 9 C -0.21 -3.52 5.25 -104.58 -0.55 -4.07 16 10 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 11 C -0.20 -4.01 9.99 -39.39 -0.39 -4.41 16 12 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 13 O -0.17 -4.90 9.76 0.02 0.00 -4.90 16 14 C -0.39 -10.77 9.49 30.88 0.29 -10.47 16 15 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 18 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 C -0.24 -5.00 9.17 -39.39 -0.36 -5.36 16 23 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 24 C -0.16 -1.81 10.56 -37.49 -0.40 -2.21 16 25 C -0.02 -0.19 11.34 -16.82 -0.19 -0.38 16 26 N -0.45 -3.91 3.09 -119.88 -0.37 -4.28 16 27 C 0.07 0.31 10.81 59.85 0.65 0.96 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.11 1.27 6.46 -51.93 -0.34 0.94 16 32 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 33 H 0.40 5.23 7.59 -40.82 -0.31 4.92 16 34 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.15 1.42 7.70 -52.49 -0.40 1.02 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.31 6.88 -51.93 -0.36 -0.05 16 45 H 0.08 0.24 8.13 -51.93 -0.42 -0.18 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -32.93 381.18 -8.42 -41.34 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.11 Total: 8.41 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.14 Total: -17.37 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.04 Total: -38.90 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.93 -8.42 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290248691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.774 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds