Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46821 * 2 1 4 4 C 1.36769 * 125.80389 * 269.99597 * 3 2 1 5 5 C 1.47256 * 126.94254 * 359.97438 * 4 3 2 6 6 O 1.21633 * 120.00059 * 359.70760 * 5 4 3 7 7 N 1.34776 * 120.00060 * 179.70502 * 5 4 3 8 8 C 1.46506 * 120.00039 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47222 * 179.72863 * 8 7 5 10 10 C 1.38303 * 119.92687 * 269.73074 * 9 8 7 11 11 C 1.38102 * 120.06272 * 179.72720 * 10 9 8 12 12 C 1.38877 * 119.93092 * 0.56459 * 11 10 9 13 13 O 1.35754 * 120.06908 * 179.68613 * 12 11 10 14 14 C 1.34835 * 117.00174 * 174.49085 * 13 12 11 15 15 H 1.07999 * 119.99479 * 5.05241 * 14 13 12 16 16 C 1.38646 * 119.99973 * 185.05815 * 14 13 12 17 17 N 1.31556 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99892 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47137 * 119.99888 * 18 16 14 21 21 H 1.48503 * 109.46700 * 239.99737 * 18 16 14 22 22 C 1.38877 * 119.86520 * 359.70939 * 12 11 10 23 23 C 1.38104 * 119.92688 * 359.97438 * 22 12 11 24 24 C 1.46691 * 106.11555 * 179.71757 * 4 3 2 25 25 C 1.34490 * 106.33011 * 0.26941 * 24 4 3 26 26 N 1.34661 * 125.79790 * 90.16877 * 3 2 1 27 27 C 1.46497 * 124.85308 * 0.02562 * 26 3 2 28 28 H 1.08993 * 109.47323 * 299.99545 * 1 2 3 29 29 H 1.09008 * 109.47226 * 59.99955 * 1 2 3 30 30 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46921 * 240.00057 * 2 1 3 32 32 H 1.08996 * 109.46862 * 120.00299 * 2 1 3 33 33 H 0.96997 * 119.99784 * 359.73361 * 7 5 4 34 34 H 1.08993 * 109.47241 * 299.73152 * 8 7 5 35 35 H 1.08999 * 109.46538 * 59.72920 * 8 7 5 36 36 H 1.07992 * 119.96935 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.03542 * 180.27868 * 11 10 9 38 38 H 0.96997 * 120.00219 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.03695 * 179.97438 * 22 12 11 40 40 H 1.07997 * 119.96206 * 180.02562 * 23 22 12 41 41 H 1.07997 * 126.83732 * 180.29373 * 24 4 3 42 42 H 1.07998 * 125.57009 * 179.97438 * 25 24 4 43 43 H 1.09001 * 109.47230 * 270.30945 * 27 26 3 44 44 H 1.08995 * 109.47314 * 30.31549 * 27 26 3 45 45 H 1.09004 * 109.47013 * 150.31453 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2990 2.1752 -1.1092 5 6 2.1541 1.7632 -2.5155 6 8 1.7642 0.6427 -2.7839 7 7 2.4533 2.6276 -3.5053 8 6 2.3096 2.2175 -4.9044 9 6 2.6986 3.3611 -5.8056 10 6 1.7416 4.2694 -6.2199 11 6 2.0961 5.3216 -7.0412 12 6 3.4128 5.4603 -7.4604 13 8 3.7631 6.4899 -8.2729 14 6 5.0750 6.6323 -8.5496 15 1 5.7839 5.8974 -8.1978 16 6 5.5139 7.7221 -9.2858 17 7 4.6503 8.6170 -9.7147 18 14 7.3314 7.9190 -9.6698 19 1 8.0877 6.7859 -9.0788 20 1 7.5278 7.9318 -11.1416 21 1 7.8234 9.1962 -9.0936 22 6 4.3703 4.5432 -7.0472 23 6 4.0108 3.4969 -6.2206 24 6 2.7528 3.4797 -0.6150 25 6 2.7288 3.4046 0.7276 26 7 2.2978 2.1624 1.0922 27 6 2.1404 1.7032 2.4744 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7604 3.5225 -3.2912 34 1 2.9574 1.3634 -5.1010 35 1 1.2733 1.9396 -5.0968 36 1 0.7169 4.1581 -5.8977 37 1 1.3492 6.0333 -7.3608 38 1 4.9573 9.3793 -10.2300 39 1 5.3950 4.6481 -7.3719 40 1 4.7550 2.7836 -5.8986 41 1 3.0471 4.3311 -1.2107 42 1 3.0057 4.1978 1.4062 43 1 1.1306 1.9265 2.8187 44 1 2.3109 0.6277 2.5217 45 1 2.8627 2.2139 3.1114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290248691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -19.413465 kcal Electronic energy + Delta-G solvation = -26381.770616 eV Core-core repulsion = 22557.668492 eV Total energy + Delta-G solvation = -3824.102124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30368 -40.89903 -40.01734 -38.43133 -35.64286 -34.50012 -34.24032 -33.67429 -31.84163 -31.36722 -29.24260 -28.01280 -27.35538 -26.02791 -24.41612 -23.64268 -22.97810 -22.13762 -21.01771 -20.02130 -19.82213 -18.86285 -18.34723 -16.91393 -16.81318 -16.63140 -16.37959 -16.25032 -15.73576 -15.63959 -15.52989 -15.29162 -14.99540 -14.90439 -14.44046 -14.30433 -14.22104 -14.00613 -13.69213 -13.57553 -13.30559 -13.24288 -13.06016 -13.00703 -12.74520 -12.57107 -12.35295 -12.29688 -12.20104 -12.08727 -11.82691 -11.19614 -10.91141 -10.74949 -10.03054 -9.80902 -9.47131 -9.08507 -9.00516 -8.47895 -6.16038 0.55413 0.57820 0.79775 1.36214 1.43602 1.54266 1.54337 1.94606 2.17434 2.52682 2.63909 2.90323 3.19907 3.48581 3.74182 3.86831 4.00942 4.03574 4.03653 4.15201 4.17742 4.37328 4.38587 4.46920 4.49263 4.57123 4.62025 4.65589 4.74664 4.78165 4.81363 4.93573 5.04407 5.04816 5.09901 5.15091 5.26863 5.31604 5.33501 5.52241 5.57515 5.69128 5.76338 5.83665 6.02042 6.14084 6.16230 6.39583 6.75284 6.96978 7.41700 7.76210 8.75182 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002124 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.418563 B =13177.649837 C =13821.333351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C 0.101 3.899 4 C -0.269 4.269 5 C 0.584 3.416 6 O -0.588 6.588 7 N -0.715 5.715 8 C 0.187 3.813 9 C -0.181 4.181 10 C -0.045 4.045 11 C -0.203 4.203 12 C 0.123 3.877 13 O -0.229 6.229 14 C -0.413 4.413 15 H 0.103 0.897 16 C -0.023 4.023 17 N -0.919 5.919 18 Si 1.019 2.981 19 H -0.251 1.251 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.242 4.242 23 C -0.046 4.046 24 C -0.188 4.188 25 C -0.010 4.010 26 N -0.441 5.441 27 C 0.058 3.942 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.199 0.801 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -14.350 26.352 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.018 4.018 4 C -0.279 4.279 5 C 0.375 3.625 6 O -0.471 6.471 7 N -0.365 5.365 8 C 0.064 3.936 9 C -0.182 4.182 10 C -0.063 4.063 11 C -0.222 4.222 12 C 0.072 3.928 13 O -0.135 6.135 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.838 3.162 19 H -0.174 1.174 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.261 4.261 23 C -0.065 4.065 24 C -0.211 4.211 25 C -0.137 4.137 26 N -0.116 5.116 27 C -0.082 4.082 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.242 0.758 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.163 0.837 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.216 0.784 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.275 -14.856 26.282 30.492 hybrid contribution 0.857 1.106 -0.809 1.616 sum -3.418 -13.750 25.473 29.149 Atomic orbital electron populations 1.21579 0.93690 1.02563 1.01241 1.20294 0.96898 0.88747 1.04039 1.20481 1.00617 0.95084 0.85630 1.20221 1.18529 0.97685 0.91505 1.17714 0.75935 0.83858 0.85004 1.90684 1.49643 1.21645 1.85088 1.45944 1.68137 1.17064 1.05386 1.19850 1.01289 0.93843 0.78594 1.19505 0.93728 0.99983 1.04971 1.20865 0.99710 0.91591 0.94129 1.20439 0.93579 1.02775 1.05446 1.19967 0.94848 0.88315 0.89677 1.83951 1.28006 1.43930 1.57590 1.21870 0.81004 1.10286 1.35700 0.87941 1.26587 1.05605 0.93979 0.95851 1.70184 1.36941 1.12574 1.35983 0.84527 0.73915 0.79242 0.78525 1.17445 1.19438 1.19319 1.21234 0.99951 0.98742 1.06210 1.20925 0.95972 0.95520 0.94073 1.22252 1.07328 0.96756 0.94810 1.22197 1.06718 0.88639 0.96125 1.43815 1.49571 1.11133 1.07077 1.22437 1.04824 1.02915 0.78010 0.91994 0.94642 0.90752 0.90173 0.88906 0.75796 0.91324 0.91118 0.83688 0.86574 0.91801 0.86116 0.84491 0.83153 0.78396 0.89429 0.88606 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.89 71.98 0.71 -1.48 16 2 C -0.06 -1.10 5.58 29.85 0.17 -0.94 16 3 C 0.10 2.06 6.14 41.78 0.26 2.32 16 4 C -0.27 -6.73 6.29 -19.04 -0.12 -6.85 16 5 C 0.58 17.09 7.81 86.61 0.68 17.77 16 6 O -0.59 -20.06 14.81 -4.14 -0.06 -20.12 16 7 N -0.71 -19.07 5.54 -470.26 -2.61 -21.68 16 8 C 0.19 5.16 5.80 85.63 0.50 5.66 16 9 C -0.18 -5.64 5.25 -19.84 -0.10 -5.74 16 10 C -0.04 -1.47 9.69 22.25 0.22 -1.25 16 11 C -0.20 -8.44 9.99 22.39 0.22 -8.22 16 12 C 0.12 6.00 6.65 22.58 0.15 6.15 16 13 O -0.23 -13.57 9.76 -22.84 -0.22 -13.80 16 14 C -0.41 -23.72 9.49 67.92 0.64 -23.07 16 15 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 16 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 17 N -0.92 -55.94 13.67 21.61 0.30 -55.65 16 18 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 19 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.24 -10.31 9.17 22.39 0.21 -10.10 16 23 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 24 C -0.19 -3.81 10.56 23.62 0.25 -3.56 16 25 C -0.01 -0.16 11.34 83.12 0.94 0.79 16 26 N -0.44 -6.37 3.09 -533.20 -1.65 -8.01 16 27 C 0.06 0.29 10.81 127.77 1.38 1.67 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.08 1.89 6.46 -2.39 -0.02 1.87 16 32 H 0.09 1.07 6.92 -2.39 -0.02 1.05 16 33 H 0.41 9.97 7.59 -92.71 -0.70 9.26 16 34 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 35 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.15 2.73 7.70 -2.91 -0.02 2.71 16 42 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.10 0.30 6.88 -2.39 -0.02 0.28 16 45 H 0.11 0.11 8.13 -2.39 -0.02 0.09 16 Total: -1.00 -76.90 381.18 4.88 -72.02 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.31 Total: 31.78 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 6.78 Total: -29.03 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.96 Total: -85.34 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.28 Total: -33.92 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.90 4.88 -72.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290248691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.611 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds