Wall clock time and date at job start Tue Mar 31 2020 15:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47429 * 2 1 4 4 C 1.50698 * 109.47561 * 180.02562 * 3 2 1 5 5 N 1.30248 * 125.62512 * 90.01908 * 4 3 2 6 6 C 1.34472 * 108.70473 * 179.97438 * 5 4 3 7 7 C 1.50700 * 126.16839 * 179.97438 * 6 5 4 8 8 C 1.34333 * 107.66631 * 359.97438 * 6 5 4 9 9 C 1.50701 * 126.43982 * 179.97438 * 8 6 5 10 10 N 1.46507 * 109.47017 * 90.00494 * 9 8 6 11 11 C 1.34773 * 119.99939 * 179.97438 * 10 9 8 12 12 O 1.21590 * 120.00197 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.99920 * 179.97438 * 11 10 9 14 14 C 1.40011 * 119.89407 * 359.72459 * 13 11 10 15 15 C 1.36318 * 120.10561 * 179.76219 * 14 13 11 16 16 C 1.40885 * 119.88889 * 0.51134 * 15 14 13 17 17 C 1.41114 * 120.09849 * 179.72188 * 16 15 14 18 18 H 1.08001 * 119.99746 * 204.65041 * 17 16 15 19 19 C 1.40218 * 120.00389 * 24.65413 * 17 16 15 20 20 N 1.30645 * 120.00047 * 17.86112 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 197.86820 * 19 17 16 22 22 H 1.48498 * 109.47299 * 59.99152 * 21 19 17 23 23 H 1.48502 * 109.47429 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46845 * 299.99441 * 21 19 17 25 25 C 1.40887 * 119.79560 * 359.74149 * 16 15 14 26 26 C 1.36314 * 119.89072 * 359.97438 * 25 16 15 27 27 O 1.33973 * 125.61301 * 269.98059 * 4 3 2 28 28 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47071 * 300.00716 * 1 2 3 30 30 H 1.09004 * 109.46314 * 60.00489 * 1 2 3 31 31 H 1.08998 * 109.47137 * 239.99802 * 2 1 3 32 32 H 1.09008 * 109.46789 * 119.99469 * 2 1 3 33 33 H 1.09004 * 109.47344 * 59.99111 * 3 2 1 34 34 H 1.09008 * 109.46701 * 299.99523 * 3 2 1 35 35 H 1.08999 * 109.47347 * 90.02309 * 7 6 5 36 36 H 1.09001 * 109.47277 * 210.02476 * 7 6 5 37 37 H 1.08997 * 109.47123 * 330.02269 * 7 6 5 38 38 H 1.09003 * 109.46895 * 210.00269 * 9 8 6 39 39 H 1.09000 * 109.47504 * 330.00469 * 9 8 6 40 40 H 0.97000 * 119.99987 * 359.97438 * 10 9 8 41 41 H 1.08006 * 119.94891 * 0.02562 * 14 13 11 42 42 H 1.08006 * 120.05249 * 180.23093 * 15 14 13 43 43 H 0.97007 * 119.99857 * 180.02562 * 20 19 17 44 44 H 1.08005 * 120.05296 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.94441 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3053 1.4430 -1.0597 6 6 5.5920 1.4434 -0.6688 7 6 6.7966 1.4436 -1.5744 8 6 5.6100 1.4437 0.6744 9 6 6.8343 1.4437 1.5531 10 7 7.2312 2.8249 1.8377 11 6 8.3074 3.0712 2.6107 12 8 8.9487 2.1470 3.0724 13 6 8.7077 4.4632 2.8970 14 6 7.9712 5.5257 2.3596 15 6 8.3341 6.8126 2.6251 16 6 9.4587 7.0725 3.4329 17 6 9.8417 8.4029 3.7058 18 1 10.8666 8.6281 3.9615 19 6 8.8919 9.4326 3.6449 20 7 7.6173 9.1487 3.6849 21 14 9.4489 11.2102 3.5064 22 1 10.2464 11.3839 2.2658 23 1 8.2603 12.0992 3.4589 24 1 10.2829 11.5607 4.6841 25 6 10.1998 6.0000 3.9671 26 6 9.8258 4.7165 3.7008 27 8 4.3277 1.4427 1.0882 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8901 35 1 7.0870 2.4712 -1.7927 36 1 7.6218 0.9297 -1.0815 37 1 6.5522 0.9298 -2.5042 38 1 6.6104 0.9300 2.4881 39 1 7.6484 0.9297 1.0421 40 1 6.7195 3.5622 1.4697 41 1 7.1116 5.3254 1.7371 42 1 7.7630 7.6316 2.2131 43 1 6.9602 9.8610 3.6425 44 1 11.0629 6.1944 4.5866 45 1 10.3935 3.8937 4.1095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292425904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:43 Heat of formation + Delta-G solvation = -21.165240 kcal Electronic energy + Delta-G solvation = -26394.418531 eV Core-core repulsion = 22570.240444 eV Total energy + Delta-G solvation = -3824.178087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.51832 -39.15053 -37.19528 -35.81394 -35.35565 -34.51348 -33.91023 -31.81549 -30.31183 -29.48374 -28.66685 -28.23835 -25.93896 -24.40006 -22.47013 -21.92422 -21.57858 -20.99301 -20.60893 -19.74005 -17.58383 -17.37261 -16.90475 -16.39059 -15.63402 -15.57367 -15.31547 -15.12923 -14.46281 -14.19524 -13.98128 -13.75868 -13.49639 -13.36670 -13.25826 -13.15404 -12.75748 -12.65217 -12.45609 -12.23483 -12.12436 -12.00383 -11.94723 -11.75226 -11.39491 -11.29069 -11.15495 -11.02295 -10.97969 -10.69714 -10.63196 -10.11026 -9.59529 -9.38806 -9.23811 -8.77240 -8.66241 -7.75946 -7.58601 -7.07016 -4.63926 1.19244 2.18178 2.41817 2.48086 2.89991 2.92392 2.96213 3.00569 3.70112 3.70931 3.80176 3.84369 4.45389 4.51739 4.55606 4.58899 4.70429 4.83081 5.06319 5.14763 5.23079 5.34883 5.36068 5.46717 5.53446 5.57742 5.61355 5.63679 5.74857 5.85212 5.87898 5.97006 5.98988 6.02549 6.21840 6.28282 6.71926 6.75366 6.79201 6.99896 7.09474 7.39609 7.58534 7.60391 7.74243 7.82323 8.03162 8.12099 8.36166 8.59371 8.71524 8.95802 9.84850 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.002408 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.269754 B =11623.238793 C =12773.593831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.023 4.023 4 C 0.197 3.803 5 N -0.481 5.481 6 C 0.010 3.990 7 C -0.074 4.074 8 C -0.066 4.066 9 C 0.213 3.787 10 N -0.740 5.740 11 C 0.575 3.425 12 O -0.573 6.573 13 C -0.285 4.285 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.020 4.020 27 O -0.193 6.193 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.400 0.600 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.288 0.712 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 -10.537 -8.311 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.061 4.061 4 C -0.010 4.010 5 N -0.211 5.211 6 C -0.111 4.111 7 C -0.132 4.132 8 C -0.119 4.119 9 C 0.089 3.911 10 N -0.395 5.395 11 C 0.371 3.629 12 O -0.455 6.455 13 C -0.290 4.290 14 C -0.081 4.081 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.148 4.148 20 N -0.393 5.393 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.258 4.258 26 C -0.039 4.039 27 O -0.080 6.080 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.236 0.764 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.222 -11.093 -8.529 17.937 hybrid contribution -0.024 1.206 0.494 1.303 sum -11.245 -9.887 -8.035 16.993 Atomic orbital electron populations 1.21756 0.94564 1.02269 1.02278 1.21539 0.96529 0.94729 1.03180 1.20195 0.81061 0.99512 1.05379 1.26250 0.96144 0.99849 0.78754 1.70372 1.01504 1.18952 1.30225 1.21607 0.93465 1.03946 0.92057 1.20187 0.91695 1.03435 0.97835 1.23184 0.83666 1.10170 0.94903 1.19377 0.88156 0.86195 0.97328 1.45990 1.32165 1.06572 1.54753 1.18604 0.78212 0.89967 0.76130 1.90646 1.54601 1.46680 1.53594 1.18816 1.04900 0.89802 1.15460 1.20463 0.96678 0.93349 0.97604 1.20972 1.01140 0.94990 1.02617 1.17794 0.90118 0.92698 0.86853 1.19833 0.96787 0.91361 1.38831 0.89668 1.26115 0.94336 1.02511 0.91816 1.69738 1.01955 1.36348 1.31298 0.86249 0.79406 0.80137 0.80423 1.18434 1.20035 1.18616 1.20712 1.04827 0.92227 1.08048 1.20354 0.93660 0.96063 0.93861 1.84414 1.16437 1.69614 1.37531 0.92177 0.92294 0.92259 0.91061 0.91404 0.88726 0.87560 0.90215 0.90415 0.90562 0.90149 0.88523 0.76446 0.89504 0.86200 0.90121 0.88311 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 3 C -0.02 -0.19 5.84 -27.88 -0.16 -0.35 16 4 C 0.20 2.42 7.60 -12.95 -0.10 2.33 16 5 N -0.48 -6.59 11.29 -7.36 -0.08 -6.67 16 6 C 0.01 0.14 7.11 -82.81 -0.59 -0.45 16 7 C -0.07 -0.80 10.22 36.01 0.37 -0.43 16 8 C -0.07 -0.92 6.75 -35.69 -0.24 -1.16 16 9 C 0.21 3.07 6.01 -5.19 -0.03 3.04 16 10 N -0.74 -12.50 5.50 -62.49 -0.34 -12.84 16 11 C 0.58 12.02 7.76 -12.42 -0.10 11.92 16 12 O -0.57 -13.25 16.32 5.29 0.09 -13.16 16 13 C -0.29 -6.45 5.89 -104.73 -0.62 -7.07 16 14 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 15 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 16 C 0.13 3.25 5.58 -106.80 -0.60 2.66 16 17 C -0.44 -10.85 9.04 -37.75 -0.34 -11.19 16 18 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 19 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 20 N -0.77 -18.36 10.95 55.56 0.61 -17.75 16 21 Si 0.91 17.12 29.60 -169.99 -5.03 12.09 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 C -0.24 -5.71 9.73 -39.27 -0.38 -6.10 16 26 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 27 O -0.19 -2.69 10.78 5.36 0.06 -2.63 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.75 7.17 -51.93 -0.37 0.38 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.10 1.29 7.17 -51.93 -0.37 0.92 16 40 H 0.40 6.42 6.46 -40.82 -0.26 6.15 16 41 H 0.09 1.67 6.37 -52.48 -0.33 1.33 16 42 H 0.12 2.97 6.16 -52.48 -0.32 2.64 16 43 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 44 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 45 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -29.30 382.52 -8.96 -38.27 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.27 Total: 10.83 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.76 Total: -13.89 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.18 Total: -37.26 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.14 Total: -15.79 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.30 -8.96 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292425904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.103 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds