Wall clock time and date at job start Tue Mar 31 2020 15:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47429 * 2 1 4 4 C 1.50698 * 109.47561 * 180.02562 * 3 2 1 5 5 N 1.30248 * 125.62512 * 90.01908 * 4 3 2 6 6 C 1.34472 * 108.70473 * 179.97438 * 5 4 3 7 7 C 1.50700 * 126.16839 * 179.97438 * 6 5 4 8 8 C 1.34333 * 107.66631 * 359.97438 * 6 5 4 9 9 C 1.50701 * 126.43982 * 179.97438 * 8 6 5 10 10 N 1.46507 * 109.47017 * 90.00494 * 9 8 6 11 11 C 1.34773 * 119.99939 * 179.97438 * 10 9 8 12 12 O 1.21590 * 120.00197 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.99920 * 179.97438 * 11 10 9 14 14 C 1.40011 * 119.89407 * 359.72459 * 13 11 10 15 15 C 1.36318 * 120.10561 * 179.76219 * 14 13 11 16 16 C 1.40885 * 119.88889 * 0.51134 * 15 14 13 17 17 C 1.41114 * 120.09849 * 179.72188 * 16 15 14 18 18 H 1.08001 * 119.99746 * 204.65041 * 17 16 15 19 19 C 1.40218 * 120.00389 * 24.65413 * 17 16 15 20 20 N 1.30645 * 120.00047 * 17.86112 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 197.86820 * 19 17 16 22 22 H 1.48498 * 109.47299 * 59.99152 * 21 19 17 23 23 H 1.48502 * 109.47429 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46845 * 299.99441 * 21 19 17 25 25 C 1.40887 * 119.79560 * 359.74149 * 16 15 14 26 26 C 1.36314 * 119.89072 * 359.97438 * 25 16 15 27 27 O 1.33973 * 125.61301 * 269.98059 * 4 3 2 28 28 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47071 * 300.00716 * 1 2 3 30 30 H 1.09004 * 109.46314 * 60.00489 * 1 2 3 31 31 H 1.08998 * 109.47137 * 239.99802 * 2 1 3 32 32 H 1.09008 * 109.46789 * 119.99469 * 2 1 3 33 33 H 1.09004 * 109.47344 * 59.99111 * 3 2 1 34 34 H 1.09008 * 109.46701 * 299.99523 * 3 2 1 35 35 H 1.08999 * 109.47347 * 90.02309 * 7 6 5 36 36 H 1.09001 * 109.47277 * 210.02476 * 7 6 5 37 37 H 1.08997 * 109.47123 * 330.02269 * 7 6 5 38 38 H 1.09003 * 109.46895 * 210.00269 * 9 8 6 39 39 H 1.09000 * 109.47504 * 330.00469 * 9 8 6 40 40 H 0.97000 * 119.99987 * 359.97438 * 10 9 8 41 41 H 1.08006 * 119.94891 * 0.02562 * 14 13 11 42 42 H 1.08006 * 120.05249 * 180.23093 * 15 14 13 43 43 H 0.97007 * 119.99857 * 180.02562 * 20 19 17 44 44 H 1.08005 * 120.05296 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.94441 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3053 1.4430 -1.0597 6 6 5.5920 1.4434 -0.6688 7 6 6.7966 1.4436 -1.5744 8 6 5.6100 1.4437 0.6744 9 6 6.8343 1.4437 1.5531 10 7 7.2312 2.8249 1.8377 11 6 8.3074 3.0712 2.6107 12 8 8.9487 2.1470 3.0724 13 6 8.7077 4.4632 2.8970 14 6 7.9712 5.5257 2.3596 15 6 8.3341 6.8126 2.6251 16 6 9.4587 7.0725 3.4329 17 6 9.8417 8.4029 3.7058 18 1 10.8666 8.6281 3.9615 19 6 8.8919 9.4326 3.6449 20 7 7.6173 9.1487 3.6849 21 14 9.4489 11.2102 3.5064 22 1 10.2464 11.3839 2.2658 23 1 8.2603 12.0992 3.4589 24 1 10.2829 11.5607 4.6841 25 6 10.1998 6.0000 3.9671 26 6 9.8258 4.7165 3.7008 27 8 4.3277 1.4427 1.0882 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8901 35 1 7.0870 2.4712 -1.7927 36 1 7.6218 0.9297 -1.0815 37 1 6.5522 0.9298 -2.5042 38 1 6.6104 0.9300 2.4881 39 1 7.6484 0.9297 1.0421 40 1 6.7195 3.5622 1.4697 41 1 7.1116 5.3254 1.7371 42 1 7.7630 7.6316 2.2131 43 1 6.9602 9.8610 3.6425 44 1 11.0629 6.1944 4.5866 45 1 10.3935 3.8937 4.1095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292425904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:42 Heat of formation + Delta-G solvation = -38.490261 kcal Electronic energy + Delta-G solvation = -26395.169800 eV Core-core repulsion = 22570.240444 eV Total energy + Delta-G solvation = -3824.929356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.52489 -40.81123 -38.95817 -36.64740 -36.38589 -35.72248 -35.68486 -32.95829 -31.92613 -31.31311 -29.57605 -29.25605 -27.56430 -25.50938 -23.64105 -23.20957 -22.80280 -22.40957 -21.58784 -21.36709 -19.38349 -18.86079 -18.01616 -17.48376 -17.25910 -16.76873 -16.45504 -16.05533 -15.79913 -15.71256 -15.44388 -15.08213 -14.69266 -14.47437 -14.40508 -14.23103 -14.12883 -13.89630 -13.71780 -13.60401 -13.25708 -13.20694 -12.95224 -12.86184 -12.67535 -12.64764 -12.37654 -12.31181 -11.90530 -11.80829 -11.69973 -11.64463 -11.38803 -11.13321 -10.88678 -10.23536 -9.75036 -9.59313 -9.43202 -8.80908 -6.49667 0.16484 0.41234 1.14141 1.38265 1.42654 1.43749 1.50820 1.51756 2.08578 2.16527 2.41609 2.76311 2.86662 3.48004 3.67333 3.71189 3.94047 3.99027 4.04907 4.11948 4.26460 4.28501 4.44208 4.45843 4.53398 4.64509 4.68238 4.70072 4.75916 4.88862 4.91423 4.92168 4.99907 5.01454 5.13631 5.17231 5.22057 5.27991 5.31923 5.34507 5.41328 5.57181 5.79701 5.91644 5.98085 6.21151 6.51968 6.55371 6.60103 6.75618 6.87111 7.32424 8.14000 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.002408 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.269754 B =11623.238793 C =12773.593831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.025 4.025 4 C 0.204 3.796 5 N -0.504 5.504 6 C 0.011 3.989 7 C -0.075 4.075 8 C -0.085 4.085 9 C 0.218 3.782 10 N -0.725 5.725 11 C 0.579 3.421 12 O -0.597 6.597 13 C -0.293 4.293 14 C -0.054 4.054 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.471 4.471 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.798 5.798 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.251 4.251 26 C -0.030 4.030 27 O -0.207 6.207 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.405 0.595 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.297 0.703 44 H 0.106 0.894 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -10.282 -9.241 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.062 4.062 4 C -0.003 4.003 5 N -0.234 5.234 6 C -0.109 4.109 7 C -0.132 4.132 8 C -0.137 4.137 9 C 0.095 3.905 10 N -0.378 5.378 11 C 0.373 3.627 12 O -0.481 6.481 13 C -0.298 4.298 14 C -0.073 4.073 15 C -0.218 4.218 16 C 0.098 3.902 17 C -0.498 4.498 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.421 5.421 21 Si 0.807 3.193 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.182 1.182 25 C -0.271 4.271 26 C -0.049 4.049 27 O -0.094 6.094 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.242 0.758 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.504 -10.860 -9.480 19.083 hybrid contribution 0.260 1.011 0.748 1.284 sum -12.244 -9.848 -8.732 17.976 Atomic orbital electron populations 1.21737 0.92981 1.02838 1.02941 1.21495 0.97774 0.93726 1.02475 1.20492 0.78440 1.00565 1.06746 1.27162 0.97464 0.97591 0.78081 1.70428 1.01830 1.20309 1.30842 1.22022 0.94136 1.02529 0.92251 1.20295 0.91062 1.03876 0.97994 1.22992 0.83557 1.12279 0.94914 1.19416 0.89052 0.84443 0.97611 1.45831 1.30678 1.08139 1.53149 1.18319 0.78965 0.88877 0.76520 1.90633 1.55701 1.47014 1.54767 1.19093 1.04613 0.91100 1.14961 1.20673 0.97087 0.92414 0.97113 1.20997 1.01568 0.95682 1.03518 1.18149 0.90932 0.93542 0.87602 1.20110 0.97435 0.92014 1.40231 0.89464 1.26952 0.94073 1.06472 0.90733 1.69764 1.03010 1.38136 1.31223 0.85153 0.79170 0.74591 0.80351 1.18186 1.18871 1.18173 1.20861 1.05293 0.92412 1.08513 1.20519 0.94204 0.95990 0.94182 1.84410 1.16670 1.70030 1.38316 0.91697 0.91696 0.91536 0.91846 0.92068 0.87251 0.86223 0.89951 0.89393 0.89530 0.90406 0.87214 0.75828 0.86628 0.86984 0.89174 0.87578 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.45 5.92 30.60 0.18 -1.27 16 3 C -0.02 -0.35 5.84 29.85 0.17 -0.18 16 4 C 0.20 4.75 7.60 88.34 0.67 5.42 16 5 N -0.50 -13.17 11.29 -291.98 -3.30 -16.46 16 6 C 0.01 0.29 7.11 41.26 0.29 0.58 16 7 C -0.08 -1.50 10.22 71.24 0.73 -0.77 16 8 C -0.08 -2.25 6.75 24.79 0.17 -2.09 16 9 C 0.22 6.02 6.01 85.63 0.51 6.54 16 10 N -0.72 -23.60 5.50 -469.87 -2.58 -26.19 16 11 C 0.58 23.77 7.76 86.73 0.67 24.44 16 12 O -0.60 -27.27 16.32 -4.00 -0.07 -27.34 16 13 C -0.29 -13.21 5.89 -19.93 -0.12 -13.33 16 14 C -0.05 -2.37 9.47 22.25 0.21 -2.16 16 15 C -0.20 -9.81 8.63 22.47 0.19 -9.61 16 16 C 0.10 5.21 5.58 -21.28 -0.12 5.09 16 17 C -0.47 -23.56 9.04 23.46 0.21 -23.35 16 18 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 19 C 0.04 1.70 5.14 85.35 0.44 2.14 16 20 N -0.80 -38.11 10.95 21.87 0.24 -37.87 16 21 Si 0.99 34.52 29.60 68.60 2.03 36.55 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 23 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 24 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 25 C -0.25 -12.30 9.73 22.47 0.22 -12.08 16 26 C -0.03 -1.40 9.52 22.25 0.21 -1.19 16 27 O -0.21 -5.54 10.78 -3.74 -0.04 -5.58 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.55 7.17 -2.39 -0.02 1.53 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.11 2.77 7.17 -2.39 -0.02 2.75 16 40 H 0.41 12.39 6.46 -92.71 -0.60 11.79 16 41 H 0.12 4.29 6.37 -2.91 -0.02 4.27 16 42 H 0.11 5.64 6.16 -2.91 -0.02 5.62 16 43 H 0.30 12.64 8.29 -92.70 -0.77 11.88 16 44 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.11 4.84 7.63 -2.91 -0.02 4.82 16 Total: -1.00 -62.83 382.52 2.07 -60.76 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.42 Total: 38.48 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 5.37 Total: -22.35 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -5.64 Total: -80.52 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.11 Total: -32.92 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Total: -62.83 2.07 -60.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292425904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.272 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds