Wall clock time and date at job start Tue Mar 31 2020 15:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47279 * 2 1 4 4 N 1.30613 * 125.42146 * 90.02266 * 3 2 1 5 5 C 1.33692 * 108.99980 * 180.02562 * 4 3 2 6 6 C 1.50704 * 126.27574 * 180.02562 * 5 4 3 7 7 C 1.36369 * 107.45037 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.64595 * 180.02562 * 7 5 4 9 9 O 1.21701 * 120.00078 * 353.91202 * 8 7 5 10 10 N 1.34777 * 119.99846 * 173.90613 * 8 7 5 11 11 C 1.46497 * 120.00135 * 3.67909 * 10 8 7 12 12 C 1.50700 * 109.47212 * 83.82442 * 11 10 8 13 13 H 1.08001 * 119.99977 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00256 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99906 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99863 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47035 * 89.99739 * 16 14 12 18 18 H 1.48493 * 109.46869 * 209.99345 * 16 14 12 19 19 H 1.48492 * 109.47138 * 329.99905 * 16 14 12 20 20 C 1.39836 * 119.99715 * 183.67146 * 10 8 7 21 21 C 1.38898 * 120.06889 * 172.58183 * 20 10 8 22 22 C 1.38108 * 119.92330 * 179.75106 * 21 20 10 23 23 C 1.38282 * 120.07278 * 0.55370 * 22 21 20 24 24 C 1.50702 * 119.92776 * 179.72624 * 23 22 21 25 25 C 1.38283 * 120.14537 * 359.69788 * 23 22 21 26 26 C 1.38104 * 120.07687 * 0.02583 * 25 23 22 27 27 O 1.33674 * 125.42464 * 270.03082 * 3 2 1 28 28 H 1.09004 * 109.46867 * 299.99838 * 1 2 3 29 29 H 1.08993 * 109.47377 * 59.99615 * 1 2 3 30 30 H 1.08994 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47233 * 240.00579 * 2 1 3 32 32 H 1.09000 * 109.47354 * 119.99985 * 2 1 3 33 33 H 1.08992 * 109.47504 * 89.97381 * 6 5 4 34 34 H 1.09005 * 109.46578 * 209.97034 * 6 5 4 35 35 H 1.09003 * 109.46731 * 329.96525 * 6 5 4 36 36 H 1.08999 * 109.47185 * 203.82314 * 11 10 8 37 37 H 1.09002 * 109.47207 * 323.82835 * 11 10 8 38 38 H 0.97008 * 119.99734 * 179.97438 * 15 14 12 39 39 H 1.08007 * 120.03741 * 0.02562 * 21 20 10 40 40 H 1.08006 * 119.95889 * 180.27824 * 22 21 20 41 41 H 1.09005 * 109.46953 * 269.97926 * 24 23 22 42 42 H 1.09004 * 109.47010 * 29.97357 * 24 23 22 43 43 H 1.09001 * 109.47366 * 149.97549 * 24 23 22 44 44 H 1.08007 * 119.96338 * 179.97438 * 25 23 22 45 45 H 1.07992 * 120.03786 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7119 3.3437 0.6864 6 6 3.1122 4.4736 1.5997 7 6 2.7187 3.3672 -0.6770 8 6 3.1155 4.4917 -1.5313 9 8 3.3792 5.5705 -1.0336 10 7 3.1882 4.3300 -2.8673 11 6 2.7936 3.0561 -3.4736 12 6 1.2999 3.0357 -3.6723 13 1 0.7041 3.8863 -3.3761 14 6 0.6940 1.9310 -4.2321 15 7 -0.6096 1.9130 -4.4050 16 14 1.7245 0.4593 -4.7438 17 1 1.8352 -0.4874 -3.6050 18 1 1.0772 -0.2226 -5.8931 19 1 3.0802 0.9180 -5.1397 20 6 3.6402 5.3784 -3.6748 21 6 3.8625 5.1674 -5.0295 22 6 4.3040 6.2063 -5.8253 23 6 4.5355 7.4525 -5.2724 24 6 5.0231 8.5822 -6.1426 25 6 4.3201 7.6645 -3.9231 26 6 3.8733 6.6315 -3.1228 27 8 2.2901 2.1515 -1.0893 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1775 4.4035 1.8192 34 1 2.9036 5.4260 1.1122 35 1 2.5448 4.4087 2.5282 36 1 3.2899 2.9433 -4.4375 37 1 3.0841 2.2359 -2.8171 38 1 -1.0359 1.1358 -4.7993 39 1 3.6862 4.1931 -5.4610 40 1 4.4728 6.0440 -6.8796 41 1 6.1130 8.5868 -6.1552 42 1 4.6486 8.4469 -7.1573 43 1 4.6603 9.5300 -5.7447 44 1 4.5023 8.6389 -3.4943 45 1 3.7048 6.7979 -2.0691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292906221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:18 Heat of formation + Delta-G solvation = 28.426780 kcal Electronic energy + Delta-G solvation = -28725.361420 eV Core-core repulsion = 24903.333804 eV Total energy + Delta-G solvation = -3822.027615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.04142 -40.29503 -38.14014 -35.92729 -34.68371 -33.98532 -32.82547 -31.66545 -30.56929 -30.34798 -28.30819 -27.78845 -25.93369 -24.46183 -23.36537 -22.05916 -21.80152 -20.98756 -20.59764 -19.58807 -17.33478 -17.07912 -16.77240 -16.40650 -15.85646 -15.24994 -14.80636 -14.63501 -14.49089 -14.23951 -13.79066 -13.75440 -13.47612 -13.36974 -13.08995 -13.01985 -12.85125 -12.60950 -12.43219 -12.09368 -12.04878 -11.97277 -11.72990 -11.54620 -11.45420 -11.19702 -11.01614 -10.83739 -10.71199 -10.59827 -10.49409 -10.25578 -9.83941 -9.27247 -9.04474 -8.79236 -8.50623 -8.44463 -7.24768 -6.28691 -4.30348 1.09941 1.84313 1.87605 2.72695 2.80794 3.06977 3.15714 3.17856 3.42985 3.46825 4.14180 4.17448 4.29793 4.82499 4.99418 5.00224 5.19793 5.22389 5.25174 5.29372 5.37319 5.45548 5.55368 5.73344 5.74742 5.80209 5.82945 5.88109 5.89801 5.93674 6.00023 6.03117 6.14058 6.19435 6.23545 6.28535 6.41720 6.52342 6.58162 6.66152 6.76620 6.82522 7.01089 7.06975 7.27392 7.61732 7.71668 7.97231 8.23433 8.42110 8.74527 9.27847 10.83768 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.005285 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.450722 B = 5296.617792 C = 7300.653920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.029 4.029 3 C 0.212 3.788 4 N -0.496 5.496 5 C 0.067 3.933 6 C -0.076 4.076 7 C -0.098 4.098 8 C 0.611 3.389 9 O -0.518 6.518 10 N -0.518 5.518 11 C 0.194 3.806 12 C -0.532 4.532 13 H 0.078 0.922 14 C 0.085 3.915 15 N -0.885 5.885 16 Si 0.863 3.137 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.165 3.835 21 C -0.144 4.144 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.105 4.105 25 C -0.103 4.103 26 C -0.169 4.169 27 O -0.141 6.141 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 1.697 4.007 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 C 0.007 3.993 4 N -0.227 5.227 5 C -0.058 4.058 6 C -0.133 4.133 7 C -0.154 4.154 8 C 0.402 3.598 9 O -0.400 6.400 10 N -0.235 5.235 11 C 0.074 3.926 12 C -0.570 4.570 13 H 0.096 0.904 14 C -0.119 4.119 15 N -0.522 5.522 16 Si 0.689 3.311 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.190 1.190 20 C 0.070 3.930 21 C -0.164 4.164 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.162 4.162 25 C -0.122 4.122 26 C -0.188 4.188 27 O -0.025 6.025 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.331 1.782 4.738 9.748 hybrid contribution 0.231 -0.875 -1.282 1.569 sum 8.562 0.907 3.456 9.277 Atomic orbital electron populations 1.21779 0.92626 1.02784 1.03771 1.20115 0.97447 0.84335 1.04786 1.26519 0.96521 0.96808 0.79485 1.70259 1.18650 1.03581 1.30171 1.21932 0.98743 0.94124 0.91040 1.20321 1.01395 0.94264 0.97338 1.22521 1.11826 0.86767 0.94277 1.16487 0.77152 0.85045 0.81085 1.90410 1.51687 1.23817 1.74056 1.45487 1.57922 1.15046 1.05092 1.20339 0.98144 0.79396 0.94674 1.21101 0.89113 1.04207 1.42618 0.90442 1.24725 0.94708 0.97735 0.94757 1.69880 1.08765 1.30231 1.43375 0.87053 0.81090 0.83715 0.79211 1.19490 1.20616 1.18988 1.17951 0.96665 0.87771 0.90609 1.20992 1.02812 1.00426 0.92148 1.20713 0.99923 0.92186 0.99064 1.19818 1.02996 0.95265 0.94637 1.20680 1.00570 0.96265 0.98676 1.20921 0.99791 0.98614 0.92845 1.22648 1.01171 0.90768 1.04251 1.84977 1.61442 1.21127 1.34936 0.91981 0.90813 0.91189 0.88847 0.87932 0.90613 0.88712 0.90851 0.93452 0.93526 0.92267 0.85079 0.86280 0.91956 0.92076 0.92085 0.86435 0.80403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 37.15 0.37 -1.74 16 2 C -0.03 -0.40 6.56 -27.88 -0.18 -0.59 16 3 C 0.21 3.86 7.57 -12.80 -0.10 3.77 16 4 N -0.50 -9.11 11.26 -7.06 -0.08 -9.19 16 5 C 0.07 1.24 7.16 -82.45 -0.59 0.65 16 6 C -0.08 -1.13 9.94 36.01 0.36 -0.78 16 7 C -0.10 -2.03 6.77 -36.85 -0.25 -2.28 16 8 C 0.61 13.00 7.53 -12.85 -0.10 12.91 16 9 O -0.52 -10.61 11.17 5.19 0.06 -10.55 16 10 N -0.52 -11.29 2.70 -116.19 -0.31 -11.60 16 11 C 0.19 4.43 3.56 -5.20 -0.02 4.41 16 12 C -0.53 -14.12 9.05 -34.44 -0.31 -14.43 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 15 N -0.89 -25.15 13.96 55.43 0.77 -24.38 16 16 Si 0.86 19.30 27.47 -169.99 -4.67 14.63 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 20 C 0.17 3.36 6.49 -83.72 -0.54 2.82 16 21 C -0.14 -2.69 9.29 -39.38 -0.37 -3.06 16 22 C -0.10 -1.60 9.69 -39.61 -0.38 -1.99 16 23 C -0.13 -1.89 5.88 -104.59 -0.62 -2.51 16 24 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 25 C -0.10 -1.64 9.69 -39.61 -0.38 -2.03 16 26 C -0.17 -3.17 9.04 -39.39 -0.36 -3.53 16 27 O -0.14 -2.96 6.85 4.42 0.03 -2.93 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.47 6.36 -51.93 -0.33 1.14 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.05 4.74 -51.93 -0.25 0.81 16 37 H 0.05 1.06 4.82 -51.93 -0.25 0.81 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 2.47 5.91 -52.48 -0.31 2.16 16 40 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 43 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 45 H 0.18 3.45 4.54 -56.22 -0.26 3.20 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -30.06 367.89 -7.91 -37.97 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.05 Total: 7.54 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.21 Total: -7.03 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.38 Total: -45.17 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.06 -7.91 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292906221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.397 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds