Wall clock time and date at job start Tue Mar 31 2020 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47279 * 2 1 4 4 N 1.30613 * 125.42146 * 90.02266 * 3 2 1 5 5 C 1.33692 * 108.99980 * 180.02562 * 4 3 2 6 6 C 1.50704 * 126.27574 * 180.02562 * 5 4 3 7 7 C 1.36369 * 107.45037 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.64595 * 180.02562 * 7 5 4 9 9 O 1.21701 * 120.00078 * 353.91202 * 8 7 5 10 10 N 1.34777 * 119.99846 * 173.90613 * 8 7 5 11 11 C 1.46497 * 120.00135 * 3.67909 * 10 8 7 12 12 C 1.50700 * 109.47212 * 83.82442 * 11 10 8 13 13 H 1.08001 * 119.99977 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00256 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99906 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99863 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47035 * 89.99739 * 16 14 12 18 18 H 1.48493 * 109.46869 * 209.99345 * 16 14 12 19 19 H 1.48492 * 109.47138 * 329.99905 * 16 14 12 20 20 C 1.39836 * 119.99715 * 183.67146 * 10 8 7 21 21 C 1.38898 * 120.06889 * 172.58183 * 20 10 8 22 22 C 1.38108 * 119.92330 * 179.75106 * 21 20 10 23 23 C 1.38282 * 120.07278 * 0.55370 * 22 21 20 24 24 C 1.50702 * 119.92776 * 179.72624 * 23 22 21 25 25 C 1.38283 * 120.14537 * 359.69788 * 23 22 21 26 26 C 1.38104 * 120.07687 * 0.02583 * 25 23 22 27 27 O 1.33674 * 125.42464 * 270.03082 * 3 2 1 28 28 H 1.09004 * 109.46867 * 299.99838 * 1 2 3 29 29 H 1.08993 * 109.47377 * 59.99615 * 1 2 3 30 30 H 1.08994 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47233 * 240.00579 * 2 1 3 32 32 H 1.09000 * 109.47354 * 119.99985 * 2 1 3 33 33 H 1.08992 * 109.47504 * 89.97381 * 6 5 4 34 34 H 1.09005 * 109.46578 * 209.97034 * 6 5 4 35 35 H 1.09003 * 109.46731 * 329.96525 * 6 5 4 36 36 H 1.08999 * 109.47185 * 203.82314 * 11 10 8 37 37 H 1.09002 * 109.47207 * 323.82835 * 11 10 8 38 38 H 0.97008 * 119.99734 * 179.97438 * 15 14 12 39 39 H 1.08007 * 120.03741 * 0.02562 * 21 20 10 40 40 H 1.08006 * 119.95889 * 180.27824 * 22 21 20 41 41 H 1.09005 * 109.46953 * 269.97926 * 24 23 22 42 42 H 1.09004 * 109.47010 * 29.97357 * 24 23 22 43 43 H 1.09001 * 109.47366 * 149.97549 * 24 23 22 44 44 H 1.08007 * 119.96338 * 179.97438 * 25 23 22 45 45 H 1.07992 * 120.03786 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7119 3.3437 0.6864 6 6 3.1122 4.4736 1.5997 7 6 2.7187 3.3672 -0.6770 8 6 3.1155 4.4917 -1.5313 9 8 3.3792 5.5705 -1.0336 10 7 3.1882 4.3300 -2.8673 11 6 2.7936 3.0561 -3.4736 12 6 1.2999 3.0357 -3.6723 13 1 0.7041 3.8863 -3.3761 14 6 0.6940 1.9310 -4.2321 15 7 -0.6096 1.9130 -4.4050 16 14 1.7245 0.4593 -4.7438 17 1 1.8352 -0.4874 -3.6050 18 1 1.0772 -0.2226 -5.8931 19 1 3.0802 0.9180 -5.1397 20 6 3.6402 5.3784 -3.6748 21 6 3.8625 5.1674 -5.0295 22 6 4.3040 6.2063 -5.8253 23 6 4.5355 7.4525 -5.2724 24 6 5.0231 8.5822 -6.1426 25 6 4.3201 7.6645 -3.9231 26 6 3.8733 6.6315 -3.1228 27 8 2.2901 2.1515 -1.0893 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1775 4.4035 1.8192 34 1 2.9036 5.4260 1.1122 35 1 2.5448 4.4087 2.5282 36 1 3.2899 2.9433 -4.4375 37 1 3.0841 2.2359 -2.8171 38 1 -1.0359 1.1358 -4.7993 39 1 3.6862 4.1931 -5.4610 40 1 4.4728 6.0440 -6.8796 41 1 6.1130 8.5868 -6.1552 42 1 4.6486 8.4469 -7.1573 43 1 4.6603 9.5300 -5.7447 44 1 4.5023 8.6389 -3.4943 45 1 3.7048 6.7979 -2.0691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292906221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:17 Heat of formation + Delta-G solvation = 9.964655 kcal Electronic energy + Delta-G solvation = -28726.161998 eV Core-core repulsion = 24903.333804 eV Total energy + Delta-G solvation = -3822.828193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.51816 -41.81242 -39.52915 -37.50525 -36.16819 -35.21936 -34.76499 -33.03633 -31.91173 -31.66761 -30.14340 -29.11701 -27.18380 -25.77079 -25.10927 -23.49067 -23.22477 -22.38960 -21.97332 -21.10148 -19.29993 -18.57370 -18.42784 -17.95752 -17.26710 -16.60384 -16.50378 -16.11976 -15.89342 -15.70749 -15.20994 -14.99799 -14.91419 -14.53664 -14.49101 -14.38661 -14.25630 -14.20691 -13.69871 -13.52745 -13.43304 -13.21864 -13.02241 -12.93347 -12.73056 -12.62303 -12.48349 -12.21400 -12.15543 -12.00987 -11.97734 -11.82476 -11.74882 -10.90297 -10.81586 -10.54332 -9.93939 -9.83277 -8.71073 -8.35383 -6.43523 -0.39444 0.46275 0.51932 1.27088 1.30558 1.30936 1.39440 1.43482 1.89051 1.94261 2.27100 2.80273 2.92200 2.96760 3.34165 3.63667 3.92657 4.06525 4.08355 4.09756 4.16440 4.21906 4.31341 4.42822 4.47129 4.54296 4.58420 4.63327 4.68551 4.73056 4.81131 4.85128 4.91107 4.93163 4.99633 5.02116 5.17146 5.18844 5.24512 5.28385 5.32290 5.34727 5.49849 5.64136 5.75626 5.99625 6.21349 6.27895 6.49758 6.56188 6.82799 7.19192 8.81091 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.005285 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.450722 B = 5296.617792 C = 7300.653920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C 0.212 3.788 4 N -0.501 5.501 5 C 0.076 3.924 6 C -0.073 4.073 7 C -0.138 4.138 8 C 0.602 3.398 9 O -0.521 6.521 10 N -0.528 5.528 11 C 0.208 3.792 12 C -0.532 4.532 13 H 0.019 0.981 14 C 0.035 3.965 15 N -0.934 5.934 16 Si 0.925 3.075 17 H -0.245 1.245 18 H -0.278 1.278 19 H -0.248 1.248 20 C 0.127 3.873 21 C -0.162 4.162 22 C -0.100 4.100 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.103 4.103 26 C -0.185 4.185 27 O -0.166 6.166 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.271 0.729 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 1.222 3.791 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 C 0.008 3.992 4 N -0.232 5.232 5 C -0.049 4.049 6 C -0.130 4.130 7 C -0.193 4.193 8 C 0.393 3.607 9 O -0.403 6.403 10 N -0.246 5.246 11 C 0.088 3.912 12 C -0.570 4.570 13 H 0.037 0.963 14 C -0.165 4.165 15 N -0.572 5.572 16 Si 0.747 3.253 17 H -0.169 1.169 18 H -0.203 1.203 19 H -0.171 1.171 20 C 0.033 3.967 21 C -0.182 4.182 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.159 4.159 25 C -0.121 4.121 26 C -0.204 4.204 27 O -0.052 6.052 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.158 0.842 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.164 0.836 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.463 1.342 4.534 11.482 hybrid contribution -0.490 -0.594 -1.182 1.411 sum 9.973 0.748 3.352 10.548 Atomic orbital electron populations 1.21744 0.92594 1.04377 1.01679 1.20470 0.97250 0.82103 1.06975 1.27575 0.94874 0.97980 0.78821 1.70328 1.19272 1.03540 1.30042 1.22522 0.96754 0.94869 0.90794 1.20432 1.02954 0.92376 0.97229 1.22630 1.14463 0.87065 0.95148 1.16702 0.77264 0.85509 0.81186 1.90394 1.52047 1.23801 1.74099 1.45469 1.58529 1.15109 1.05498 1.20047 0.95417 0.80560 0.95191 1.21049 0.90790 1.02510 1.42621 0.96291 1.25571 0.95790 1.00831 0.94315 1.70034 1.10979 1.31535 1.44688 0.86051 0.79878 0.79816 0.79595 1.16918 1.20317 1.17135 1.18323 0.98721 0.88205 0.91427 1.21102 1.04036 1.01140 0.91916 1.21098 0.98688 0.91830 1.00223 1.20311 1.00793 0.96044 0.94692 1.20760 1.01704 0.94994 0.98473 1.21276 0.98616 0.98947 0.93304 1.22639 1.02349 0.91159 1.04268 1.84918 1.62276 1.21636 1.36397 0.91929 0.94962 0.87743 0.88038 0.84240 0.88509 0.89644 0.88796 0.92599 0.92954 0.91998 0.85972 0.83342 0.90070 0.90730 0.90676 0.83552 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.89 71.98 0.71 -3.21 16 2 C -0.03 -0.80 6.56 29.85 0.20 -0.60 16 3 C 0.21 7.70 7.57 88.29 0.67 8.37 16 4 N -0.50 -18.16 11.26 -291.03 -3.28 -21.44 16 5 C 0.08 2.84 7.16 41.84 0.30 3.14 16 6 C -0.07 -2.14 9.94 71.24 0.71 -1.43 16 7 C -0.14 -5.95 6.77 24.04 0.16 -5.79 16 8 C 0.60 27.02 7.53 86.45 0.65 27.67 16 9 O -0.52 -22.44 11.17 -4.35 -0.05 -22.49 16 10 N -0.53 -24.25 2.70 -639.74 -1.73 -25.98 16 11 C 0.21 9.88 3.56 85.63 0.30 10.18 16 12 C -0.53 -29.84 9.05 25.60 0.23 -29.61 16 13 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 14 C 0.03 1.91 5.47 84.65 0.46 2.38 16 15 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 16 Si 0.93 39.68 27.47 68.60 1.88 41.56 16 17 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.25 -9.86 6.54 99.48 0.65 -9.21 16 20 C 0.13 5.39 6.49 38.18 0.25 5.64 16 21 C -0.16 -6.17 9.29 22.40 0.21 -5.96 16 22 C -0.10 -3.05 9.69 22.25 0.22 -2.84 16 23 C -0.12 -3.25 5.88 -19.84 -0.12 -3.37 16 24 C -0.10 -1.90 10.01 71.24 0.71 -1.19 16 25 C -0.10 -3.16 9.69 22.25 0.22 -2.94 16 26 C -0.18 -7.11 9.04 22.39 0.20 -6.90 16 27 O -0.17 -7.23 6.85 -7.11 -0.05 -7.28 16 28 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.08 2.68 6.36 -2.38 -0.02 2.67 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.53 4.74 -2.39 -0.01 2.52 16 37 H 0.05 2.44 4.82 -2.39 -0.01 2.43 16 38 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 39 H 0.12 4.74 5.91 -2.91 -0.02 4.72 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 43 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.17 6.74 4.54 -61.90 -0.28 6.45 16 Total: -1.00 -70.61 367.89 3.86 -66.75 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.69 Total: 30.40 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 6.08 Total: -6.46 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -4.70 Total: -102.47 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.10 Total: -29.77 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.88 Total: 41.56 kcal Total: -70.61 3.86 -66.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292906221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.712 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds