Wall clock time and date at job start Tue Mar 31 2020 15:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46755 * 2 1 4 4 N 1.30615 * 125.42400 * 90.02867 * 3 2 1 5 5 C 1.33691 * 108.99569 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.27323 * 180.02562 * 5 4 3 7 7 C 1.36347 * 107.45092 * 359.97438 * 5 4 3 8 8 C 1.46726 * 126.64031 * 180.02562 * 7 5 4 9 9 O 1.21685 * 119.99785 * 359.97438 * 8 7 5 10 10 N 1.34770 * 119.99839 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00240 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46783 * 34.99218 * 11 10 8 13 13 C 1.53000 * 109.47369 * 154.99867 * 11 10 8 14 14 C 1.50700 * 109.46751 * 294.99698 * 13 11 10 15 15 H 1.08001 * 120.00624 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99683 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47271 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.47291 * 209.99717 * 18 16 14 21 21 H 1.48505 * 109.47237 * 330.00119 * 18 16 14 22 22 C 1.50703 * 109.47065 * 275.00247 * 11 10 8 23 23 C 1.38235 * 120.00292 * 139.99706 * 22 11 10 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 319.96999 * 22 11 10 28 28 O 1.33670 * 125.42154 * 270.33100 * 3 2 1 29 29 H 1.09002 * 109.47234 * 300.00019 * 1 2 3 30 30 H 1.08995 * 109.47242 * 59.99996 * 1 2 3 31 31 H 1.08999 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47115 * 240.00442 * 2 1 3 33 33 H 1.08995 * 109.47242 * 120.00004 * 2 1 3 34 34 H 1.09002 * 109.46726 * 269.95405 * 6 5 4 35 35 H 1.08998 * 109.47458 * 29.95196 * 6 5 4 36 36 H 1.08999 * 109.47692 * 149.95778 * 6 5 4 37 37 H 0.96997 * 120.00034 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.46916 * 54.99829 * 13 11 10 39 39 H 1.09003 * 109.46852 * 175.00197 * 13 11 10 40 40 H 0.97001 * 119.99717 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99730 * 359.97438 * 23 22 11 42 42 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 44 44 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00455 * 0.02562 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2851 2.1345 1.0644 5 6 2.7128 3.3434 0.6863 6 6 3.1135 4.4732 1.5994 7 6 2.7212 3.3663 -0.6770 8 6 3.1196 4.4905 -1.5315 9 8 3.4892 5.5354 -1.0291 10 7 3.0753 4.3662 -2.8727 11 6 3.4736 5.4885 -3.7260 12 1 4.2919 6.0317 -3.2533 13 6 3.9319 4.9578 -5.0858 14 6 5.1787 4.1303 -4.9077 15 1 5.6017 3.9959 -3.9231 16 6 5.7795 3.5446 -6.0019 17 7 5.2647 3.7086 -7.2010 18 14 7.3246 2.5183 -5.7812 19 1 6.9480 1.1019 -5.5417 20 1 8.1580 2.6084 -7.0069 21 1 8.0960 3.0286 -4.6193 22 6 2.3005 6.4149 -3.9176 23 6 2.4920 7.7839 -3.9077 24 6 1.4160 8.6335 -4.0840 25 6 0.1486 8.1142 -4.2712 26 6 -0.0426 6.7452 -4.2826 27 6 1.0331 5.8955 -4.1040 28 8 2.2846 2.1534 -1.0893 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2414 5.0891 1.8196 35 1 3.5141 4.0657 2.5276 36 1 3.8745 5.0823 1.1117 37 1 2.7803 3.5334 -3.2731 38 1 3.1449 4.3405 -5.5189 39 1 4.1437 5.7956 -5.7502 40 1 5.6872 3.2963 -7.9707 41 1 3.4822 8.1895 -3.7621 42 1 1.5654 9.7031 -4.0758 43 1 -0.6928 8.7781 -4.4046 44 1 -1.0329 6.3395 -4.4285 45 1 0.8834 4.8260 -4.1118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293404493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:21 Heat of formation + Delta-G solvation = -8.649864 kcal Electronic energy + Delta-G solvation = -27785.592265 eV Core-core repulsion = 23961.956886 eV Total energy + Delta-G solvation = -3823.635379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.38853 -39.65803 -38.41628 -35.62077 -35.06098 -34.33125 -32.79201 -31.37175 -30.64861 -30.47804 -28.93203 -27.58405 -25.31957 -24.59033 -22.37250 -22.10909 -21.83730 -21.49182 -20.42285 -19.84324 -17.91941 -16.95546 -16.82602 -16.20857 -15.86591 -15.70592 -14.92956 -14.88354 -14.59648 -14.34490 -14.15724 -14.11765 -13.45947 -13.24439 -13.09435 -13.05392 -12.81977 -12.73741 -12.56233 -12.26094 -12.14700 -11.94233 -11.61878 -11.48432 -11.18514 -10.98855 -10.95869 -10.80808 -10.76574 -10.64712 -10.52511 -9.84088 -9.79200 -9.35035 -8.86281 -8.58078 -8.50031 -8.47355 -8.23779 -6.12663 -4.16432 0.93131 1.73111 1.76733 2.42751 2.46253 3.24683 3.32169 3.36285 3.37894 3.52178 3.86012 4.19767 4.37047 4.68572 4.75876 4.84726 4.93651 5.13649 5.23036 5.23536 5.24538 5.33140 5.46744 5.48302 5.49297 5.56265 5.67192 5.72952 5.83539 5.86327 5.89137 5.92268 5.99686 6.09760 6.30083 6.35483 6.38445 6.50460 6.72548 6.80738 6.81839 7.04476 7.36139 7.43301 7.51175 7.59750 7.83352 7.94241 8.20492 8.46250 8.89001 9.48931 10.97772 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007122 B = 0.005024 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.447276 B = 5571.489511 C = 7921.210007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.029 4.029 3 C 0.213 3.787 4 N -0.489 5.489 5 C 0.069 3.931 6 C -0.077 4.077 7 C -0.104 4.104 8 C 0.604 3.396 9 O -0.522 6.522 10 N -0.685 5.685 11 C 0.184 3.816 12 H 0.092 0.908 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.074 4.074 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.124 4.124 27 C -0.108 4.108 28 O -0.183 6.183 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.025 0.975 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -1.780 11.548 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.067 4.067 3 C 0.007 3.993 4 N -0.219 5.219 5 C -0.055 4.055 6 C -0.135 4.135 7 C -0.159 4.159 8 C 0.388 3.612 9 O -0.401 6.401 10 N -0.332 5.332 11 C 0.080 3.920 12 H 0.109 0.891 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.075 4.075 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.126 4.126 28 O -0.070 6.070 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.241 0.759 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.689 -1.316 12.212 16.283 hybrid contribution 0.776 -0.870 -0.986 1.527 sum -9.914 -2.187 11.226 15.136 Atomic orbital electron populations 1.21785 0.92867 1.03069 1.03106 1.20153 0.96998 0.84038 1.05557 1.26483 0.97434 0.96598 0.78794 1.70284 1.17922 1.03689 1.29996 1.22000 0.98136 0.93976 0.91360 1.20346 1.02766 0.93099 0.97242 1.23176 1.11248 0.86187 0.95289 1.16348 0.78424 0.84282 0.82145 1.90813 1.48655 1.26694 1.73949 1.45929 1.65002 1.17828 1.04480 1.20370 0.92425 0.84981 0.94187 0.89050 1.19408 0.96663 0.96991 0.88298 1.21120 1.10027 1.31201 0.93722 0.92424 1.24973 0.97407 0.96440 0.95191 1.69958 1.40248 1.44227 0.98501 0.86602 0.83234 0.80560 0.77708 1.20667 1.21125 1.19817 1.20494 0.95362 0.94468 0.97157 1.21011 0.99009 0.92814 0.99639 1.21046 0.92922 0.99302 1.00757 1.21009 0.96969 0.95189 1.01969 1.21041 0.98471 0.93670 1.01061 1.20917 0.92374 0.99561 0.99772 1.84471 1.63116 1.22244 1.37137 0.91770 0.91919 0.90752 0.88403 0.87451 0.90315 0.90808 0.88527 0.75900 0.95634 0.94406 0.92815 0.86031 0.86504 0.86773 0.86709 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.44 16 3 C 0.21 2.88 7.57 -12.79 -0.10 2.78 16 4 N -0.49 -7.38 11.26 -7.07 -0.08 -7.46 16 5 C 0.07 1.11 7.16 -82.47 -0.59 0.52 16 6 C -0.08 -1.05 9.87 36.00 0.36 -0.70 16 7 C -0.10 -1.77 7.18 -36.84 -0.26 -2.04 16 8 C 0.60 11.32 7.75 -12.83 -0.10 11.23 16 9 O -0.52 -10.61 14.46 5.20 0.08 -10.53 16 10 N -0.68 -12.87 4.03 -56.23 -0.23 -13.09 16 11 C 0.18 3.72 2.11 -69.08 -0.15 3.57 16 12 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 13 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 14 C -0.52 -13.79 8.84 -34.44 -0.30 -14.09 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.07 -1.35 4.91 -104.62 -0.51 -1.87 16 23 C -0.11 -1.80 9.67 -39.59 -0.38 -2.19 16 24 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 25 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.11 -1.83 9.32 -39.58 -0.37 -2.19 16 28 O -0.18 -2.87 10.57 4.43 0.05 -2.82 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.42 6.47 -51.93 -0.34 1.09 16 37 H 0.41 7.32 8.40 -40.82 -0.34 6.98 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.87 7.72 -52.49 -0.41 1.46 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -31.33 386.95 -8.79 -40.12 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.51 Total: 7.41 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.64 Total: -10.84 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.43 Total: -45.21 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.12 Total: -13.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.33 -8.79 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293404493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.465 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds