Wall clock time and date at job start Tue Mar 31 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46755 * 2 1 4 4 N 1.30615 * 125.42400 * 90.02867 * 3 2 1 5 5 C 1.33691 * 108.99569 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.27323 * 180.02562 * 5 4 3 7 7 C 1.36347 * 107.45092 * 359.97438 * 5 4 3 8 8 C 1.46726 * 126.64031 * 180.02562 * 7 5 4 9 9 O 1.21685 * 119.99785 * 359.97438 * 8 7 5 10 10 N 1.34770 * 119.99839 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00240 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46783 * 34.99218 * 11 10 8 13 13 C 1.53000 * 109.47369 * 154.99867 * 11 10 8 14 14 C 1.50700 * 109.46751 * 294.99698 * 13 11 10 15 15 H 1.08001 * 120.00624 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99683 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47271 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.47291 * 209.99717 * 18 16 14 21 21 H 1.48505 * 109.47237 * 330.00119 * 18 16 14 22 22 C 1.50703 * 109.47065 * 275.00247 * 11 10 8 23 23 C 1.38235 * 120.00292 * 139.99706 * 22 11 10 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 319.96999 * 22 11 10 28 28 O 1.33670 * 125.42154 * 270.33100 * 3 2 1 29 29 H 1.09002 * 109.47234 * 300.00019 * 1 2 3 30 30 H 1.08995 * 109.47242 * 59.99996 * 1 2 3 31 31 H 1.08999 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47115 * 240.00442 * 2 1 3 33 33 H 1.08995 * 109.47242 * 120.00004 * 2 1 3 34 34 H 1.09002 * 109.46726 * 269.95405 * 6 5 4 35 35 H 1.08998 * 109.47458 * 29.95196 * 6 5 4 36 36 H 1.08999 * 109.47692 * 149.95778 * 6 5 4 37 37 H 0.96997 * 120.00034 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.46916 * 54.99829 * 13 11 10 39 39 H 1.09003 * 109.46852 * 175.00197 * 13 11 10 40 40 H 0.97001 * 119.99717 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99730 * 359.97438 * 23 22 11 42 42 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 44 44 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00455 * 0.02562 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2851 2.1345 1.0644 5 6 2.7128 3.3434 0.6863 6 6 3.1135 4.4732 1.5994 7 6 2.7212 3.3663 -0.6770 8 6 3.1196 4.4905 -1.5315 9 8 3.4892 5.5354 -1.0291 10 7 3.0753 4.3662 -2.8727 11 6 3.4736 5.4885 -3.7260 12 1 4.2919 6.0317 -3.2533 13 6 3.9319 4.9578 -5.0858 14 6 5.1787 4.1303 -4.9077 15 1 5.6017 3.9959 -3.9231 16 6 5.7795 3.5446 -6.0019 17 7 5.2647 3.7086 -7.2010 18 14 7.3246 2.5183 -5.7812 19 1 6.9480 1.1019 -5.5417 20 1 8.1580 2.6084 -7.0069 21 1 8.0960 3.0286 -4.6193 22 6 2.3005 6.4149 -3.9176 23 6 2.4920 7.7839 -3.9077 24 6 1.4160 8.6335 -4.0840 25 6 0.1486 8.1142 -4.2712 26 6 -0.0426 6.7452 -4.2826 27 6 1.0331 5.8955 -4.1040 28 8 2.2846 2.1534 -1.0893 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2414 5.0891 1.8196 35 1 3.5141 4.0657 2.5276 36 1 3.8745 5.0823 1.1117 37 1 2.7803 3.5334 -3.2731 38 1 3.1449 4.3405 -5.5189 39 1 4.1437 5.7956 -5.7502 40 1 5.6872 3.2963 -7.9707 41 1 3.4822 8.1895 -3.7621 42 1 1.5654 9.7031 -4.0758 43 1 -0.6928 8.7781 -4.4046 44 1 -1.0329 6.3395 -4.4285 45 1 0.8834 4.8260 -4.1118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293404493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:20 Heat of formation + Delta-G solvation = -27.976735 kcal Electronic energy + Delta-G solvation = -27786.430341 eV Core-core repulsion = 23961.956886 eV Total energy + Delta-G solvation = -3824.473455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.57227 -41.10336 -39.74113 -37.07201 -36.37012 -35.18162 -34.77595 -32.79061 -31.77201 -31.66202 -30.60955 -28.85954 -26.83197 -25.74253 -23.86821 -23.54868 -23.06378 -22.54310 -21.70477 -21.30193 -19.33903 -18.63662 -18.12484 -17.73963 -17.19829 -16.95409 -16.50866 -16.26276 -15.83148 -15.63736 -15.48561 -15.09939 -14.80007 -14.52476 -14.32061 -14.22642 -14.17984 -14.11155 -13.71042 -13.61135 -13.49442 -13.26507 -12.97381 -12.66604 -12.63671 -12.51870 -12.20096 -12.17590 -12.08402 -11.95933 -11.90837 -11.65140 -11.40094 -11.23808 -10.61722 -10.28976 -9.85599 -9.77619 -9.55984 -8.23590 -6.33872 -0.31453 0.47504 0.53734 1.25762 1.29351 1.36170 1.38044 1.48363 1.95759 2.15322 2.36937 2.79110 2.94916 3.10600 3.58790 3.62968 3.92869 3.99862 4.12773 4.17349 4.18737 4.19985 4.30143 4.40095 4.41378 4.57573 4.60696 4.64327 4.71845 4.75062 4.76773 4.92138 4.95429 5.00894 5.07080 5.13100 5.18050 5.24527 5.32301 5.37571 5.52174 5.58747 5.62233 5.73739 5.82282 6.11923 6.16899 6.30498 6.52974 6.78021 6.97495 7.35004 8.87083 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007122 B = 0.005024 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.447276 B = 5571.489511 C = 7921.210007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C 0.228 3.772 4 N -0.505 5.505 5 C 0.075 3.925 6 C -0.076 4.076 7 C -0.137 4.137 8 C 0.605 3.395 9 O -0.545 6.545 10 N -0.684 5.684 11 C 0.200 3.800 12 H 0.069 0.931 13 C 0.038 3.962 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.923 5.923 18 Si 0.954 3.046 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.273 1.273 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.124 4.124 28 O -0.193 6.193 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.407 0.593 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.265 0.735 41 H 0.119 0.881 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.144 0.856 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 -2.612 12.614 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C 0.022 3.978 4 N -0.235 5.235 5 C -0.049 4.049 6 C -0.133 4.133 7 C -0.192 4.192 8 C 0.391 3.609 9 O -0.426 6.426 10 N -0.332 5.332 11 C 0.096 3.904 12 H 0.088 0.912 13 C 0.000 4.000 14 C -0.570 4.570 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.563 5.563 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.197 1.197 22 C -0.101 4.101 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.142 4.142 28 O -0.080 6.080 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.147 -2.154 13.291 18.134 hybrid contribution 1.137 -0.645 -1.272 1.824 sum -11.010 -2.798 12.019 16.538 Atomic orbital electron populations 1.21783 0.91604 1.04699 1.02297 1.20568 0.97866 0.81091 1.07399 1.27686 0.94549 0.97666 0.77877 1.70362 1.19182 1.03494 1.30475 1.22411 0.96539 0.94719 0.91219 1.20395 1.02890 0.92525 0.97450 1.22788 1.14317 0.86703 0.95383 1.16485 0.77833 0.84668 0.81916 1.90782 1.49742 1.27799 1.74258 1.45809 1.65171 1.17503 1.04670 1.19891 0.93095 0.85418 0.91999 0.91246 1.19141 0.95460 0.95410 0.89949 1.21374 1.10847 1.31359 0.93434 0.93076 1.25743 1.00339 0.97573 0.94886 1.70062 1.41716 1.45303 0.99215 0.85619 0.79589 0.79260 0.77628 1.19654 1.20578 1.19739 1.20374 0.95192 0.94793 0.99708 1.21188 1.00042 0.92738 1.00662 1.21413 0.92512 1.00567 0.99406 1.21484 0.97763 0.95377 0.99818 1.21414 0.98999 0.94053 0.99838 1.21038 0.92596 1.00031 1.00585 1.84467 1.63542 1.21997 1.38026 0.92456 0.92855 0.87898 0.86705 0.85383 0.89080 0.88777 0.89993 0.75718 0.97121 0.97049 0.92623 0.86344 0.83512 0.82989 0.83811 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.03 -0.47 6.56 29.85 0.20 -0.27 16 3 C 0.23 5.88 7.57 88.29 0.67 6.55 16 4 N -0.51 -14.72 11.26 -291.05 -3.28 -18.00 16 5 C 0.08 2.39 7.16 41.83 0.30 2.69 16 6 C -0.08 -2.03 9.87 71.23 0.70 -1.33 16 7 C -0.14 -4.79 7.18 24.05 0.17 -4.62 16 8 C 0.60 23.73 7.75 86.46 0.67 24.39 16 9 O -0.55 -23.20 14.46 -4.30 -0.06 -23.26 16 10 N -0.68 -27.15 4.03 -450.03 -1.81 -28.96 16 11 C 0.20 8.61 2.11 44.25 0.09 8.71 16 12 H 0.07 3.24 7.44 -2.39 -0.02 3.22 16 13 C 0.04 1.91 4.49 29.85 0.13 2.04 16 14 C -0.53 -29.16 8.84 25.60 0.23 -28.93 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.76 5.46 84.66 0.46 1.22 16 17 N -0.92 -53.85 13.29 21.45 0.28 -53.57 16 18 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.10 -3.81 4.91 -19.87 -0.10 -3.91 16 23 C -0.13 -4.44 9.67 22.27 0.22 -4.23 16 24 C -0.12 -3.38 10.05 22.27 0.22 -3.15 16 25 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 26 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 27 C -0.12 -4.26 9.32 22.27 0.21 -4.05 16 28 O -0.19 -6.05 10.57 -7.05 -0.07 -6.12 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.47 6.47 -2.39 -0.02 2.45 16 37 H 0.41 15.58 8.40 -92.71 -0.78 14.80 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.12 4.02 8.04 -2.91 -0.02 4.00 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 45 H 0.11 3.79 7.72 -2.91 -0.02 3.77 16 Total: -1.00 -69.67 386.95 2.64 -67.02 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.22 Total: 29.36 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.33 Total: -12.21 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.80 Total: -100.53 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.14 Total: -29.38 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.67 2.64 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293404493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.046 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds