Wall clock time and date at job start Tue Mar 31 2020 15:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.50699 * 109.47206 * 180.02562 * 3 2 1 5 5 N 1.30255 * 125.61933 * 90.02420 * 4 3 2 6 6 C 1.34480 * 108.69886 * 179.97438 * 5 4 3 7 7 C 1.50700 * 126.16353 * 179.97438 * 6 5 4 8 8 C 1.34324 * 107.66931 * 359.97438 * 6 5 4 9 9 C 1.50704 * 126.44399 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47199 * 89.99367 * 9 8 6 11 11 C 1.34777 * 119.99724 * 180.02562 * 10 9 8 12 12 O 1.21547 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.47890 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.39922 * 120.02089 * 359.72316 * 13 11 10 15 15 C 1.38329 * 120.35352 * 179.78732 * 14 13 11 16 16 C 1.37750 * 120.41571 * 0.46983 * 15 14 13 17 17 C 1.40751 * 120.03512 * 359.78639 * 16 15 14 18 18 C 1.41438 * 120.17590 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99784 * 334.93146 * 18 17 16 20 20 C 1.39934 * 119.99935 * 154.92202 * 18 17 16 21 21 N 1.30828 * 120.00512 * 342.59543 * 20 18 17 22 22 Si 1.86806 * 119.99721 * 162.59121 * 20 18 17 23 23 H 1.48500 * 109.46991 * 60.00880 * 22 20 18 24 24 H 1.48507 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47400 * 300.00307 * 22 20 18 26 26 C 1.38991 * 120.02772 * 180.02562 * 13 11 10 27 27 O 1.33964 * 125.61921 * 269.97928 * 4 3 2 28 28 H 1.09006 * 109.47003 * 300.00347 * 1 2 3 29 29 H 1.09000 * 109.47107 * 59.99885 * 1 2 3 30 30 H 1.08997 * 109.47499 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47153 * 239.99366 * 2 1 3 32 32 H 1.09000 * 109.47107 * 120.00115 * 2 1 3 33 33 H 1.08993 * 109.47065 * 59.99669 * 3 2 1 34 34 H 1.09000 * 109.47138 * 300.00096 * 3 2 1 35 35 H 1.09003 * 109.47242 * 89.97087 * 7 6 5 36 36 H 1.09001 * 109.47575 * 209.97545 * 7 6 5 37 37 H 1.09007 * 109.47125 * 329.97436 * 7 6 5 38 38 H 1.08998 * 109.47126 * 210.00275 * 9 8 6 39 39 H 1.09011 * 109.46815 * 329.99563 * 9 8 6 40 40 H 0.96998 * 120.00213 * 0.02562 * 10 9 8 41 41 H 1.08004 * 119.81994 * 359.97438 * 14 13 11 42 42 H 1.08008 * 119.78929 * 180.23358 * 15 14 13 43 43 H 1.07991 * 119.97855 * 179.76553 * 16 15 14 44 44 H 0.96999 * 120.00474 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.20296 * 359.94749 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3052 1.4430 -1.0598 6 6 5.5919 1.4434 -0.6690 7 6 6.7964 1.4435 -1.5746 8 6 5.6101 1.4435 0.6742 9 6 6.8343 1.4433 1.5530 10 7 7.2315 2.8245 1.8374 11 6 8.3083 3.0705 2.6097 12 8 8.9502 2.1466 3.0696 13 6 8.7090 4.4648 2.8974 14 6 7.9738 5.5288 2.3633 15 6 8.3398 6.8355 2.6315 16 6 9.4373 7.1047 3.4192 17 6 10.1922 6.0473 3.9607 18 6 11.3200 6.3203 4.7694 19 1 11.8488 7.2557 4.6607 20 6 11.7506 5.3784 5.7105 21 7 10.9472 4.4181 6.0898 22 14 13.4728 5.4923 6.4252 23 1 13.6349 6.7943 7.1208 24 1 13.6816 4.3846 7.3922 25 1 14.4709 5.3880 5.3307 26 6 9.8197 4.7192 3.6932 27 8 4.3277 1.4427 1.0880 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 7.0863 2.4712 -1.7935 36 1 7.6220 0.9303 -1.0815 37 1 6.5522 0.9291 -2.5041 38 1 6.6104 0.9297 2.4879 39 1 7.6484 0.9291 1.0418 40 1 6.7194 3.5619 1.4700 41 1 7.1142 5.3287 1.7408 42 1 7.7635 7.6499 2.2176 43 1 9.7189 8.1275 3.6209 44 1 11.2458 3.7650 6.7418 45 1 10.3925 3.9010 4.1042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293636803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:47 Heat of formation + Delta-G solvation = -16.950178 kcal Electronic energy + Delta-G solvation = -26527.337488 eV Core-core repulsion = 22703.342180 eV Total energy + Delta-G solvation = -3823.995308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.55702 -39.26728 -37.10147 -35.84725 -35.39468 -34.59690 -33.74574 -31.84565 -30.29867 -29.47975 -28.69424 -28.13349 -25.39285 -24.66037 -22.59335 -22.21489 -21.61399 -20.99865 -20.65177 -19.67673 -17.93063 -17.06857 -16.73571 -16.18600 -15.60554 -15.51007 -15.26971 -15.04828 -14.74212 -14.45052 -13.95036 -13.79223 -13.51788 -13.39743 -13.27076 -13.17262 -12.68342 -12.67360 -12.52789 -12.49770 -12.25378 -12.03648 -11.77860 -11.67023 -11.18260 -11.18087 -11.10757 -11.01310 -10.77784 -10.68878 -10.53113 -10.09408 -9.72961 -9.28932 -9.23366 -8.84622 -8.71031 -7.67382 -7.55297 -6.82292 -4.44203 1.15102 2.14837 2.37657 2.44263 2.79435 3.06224 3.07876 3.14595 3.64125 3.74228 3.79626 3.90222 4.41783 4.52806 4.55571 4.60109 4.67367 4.80036 5.03105 5.11632 5.19987 5.30510 5.33006 5.43853 5.52624 5.56768 5.59107 5.60871 5.72098 5.75555 5.82990 5.85420 5.93927 6.04865 6.18396 6.23709 6.63639 6.68244 6.94948 6.97422 7.18010 7.34392 7.55059 7.65069 7.70473 7.87548 7.99980 8.14552 8.46831 8.76529 8.79483 8.83568 10.12576 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.002253 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.207829 B =12426.960062 C =12610.419893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.023 4.023 4 C 0.197 3.803 5 N -0.481 5.481 6 C 0.011 3.989 7 C -0.075 4.075 8 C -0.066 4.066 9 C 0.211 3.789 10 N -0.735 5.735 11 C 0.568 3.432 12 O -0.543 6.543 13 C -0.128 4.128 14 C -0.218 4.218 15 C -0.097 4.097 16 C -0.210 4.210 17 C 0.099 3.901 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.090 4.090 27 O -0.193 6.193 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.402 0.598 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 -7.251 -11.007 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.061 4.061 4 C -0.010 4.010 5 N -0.211 5.211 6 C -0.110 4.110 7 C -0.132 4.132 8 C -0.119 4.119 9 C 0.087 3.913 10 N -0.391 5.391 11 C 0.359 3.641 12 O -0.421 6.421 13 C -0.131 4.131 14 C -0.238 4.238 15 C -0.115 4.115 16 C -0.230 4.230 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.110 4.110 27 O -0.080 6.080 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.238 0.762 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.569 -8.146 -11.049 20.017 hybrid contribution 0.558 0.394 0.912 1.139 sum -14.011 -7.752 -10.137 18.951 Atomic orbital electron populations 1.21755 0.94549 1.02299 1.02257 1.21539 0.96542 0.94710 1.03222 1.20194 0.81037 0.99545 1.05347 1.26260 0.96151 0.99801 0.78754 1.70385 1.01491 1.18972 1.30207 1.21614 0.93476 1.03836 0.92041 1.20197 0.91705 1.03435 0.97873 1.23146 0.83636 1.10294 0.94867 1.19426 0.88329 0.85940 0.97586 1.46030 1.31836 1.06881 1.54322 1.18870 0.78588 0.90228 0.76398 1.90710 1.53552 1.46295 1.51500 1.19401 0.99999 0.89805 1.03871 1.20332 1.02588 0.92699 1.08150 1.20437 0.97236 0.94988 0.98883 1.21108 0.98053 0.97822 1.06037 1.17598 0.91661 0.90693 0.90438 1.19558 1.10382 1.03003 1.15908 0.90066 1.25969 0.98875 0.94081 0.95689 1.69775 1.35323 1.11801 1.23904 0.86314 0.82169 0.78827 0.79152 1.18957 1.20217 1.18698 1.21631 0.95416 0.97977 0.96002 1.84414 1.16424 1.69607 1.37529 0.92301 0.92265 0.92157 0.91046 0.91377 0.88739 0.87562 0.90213 0.90363 0.90522 0.89876 0.88289 0.76239 0.89386 0.88876 0.88551 0.90345 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.20 2.33 7.60 -12.95 -0.10 2.23 16 5 N -0.48 -6.36 11.29 -7.36 -0.08 -6.44 16 6 C 0.01 0.15 7.11 -82.81 -0.59 -0.44 16 7 C -0.07 -0.78 10.22 36.01 0.37 -0.41 16 8 C -0.07 -0.90 6.75 -35.69 -0.24 -1.14 16 9 C 0.21 3.01 6.01 -5.19 -0.03 2.98 16 10 N -0.74 -12.25 5.50 -62.41 -0.34 -12.59 16 11 C 0.57 12.18 7.77 -12.31 -0.10 12.09 16 12 O -0.54 -13.21 16.33 5.32 0.09 -13.12 16 13 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 14 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 15 C -0.10 -2.07 10.01 -39.73 -0.40 -2.46 16 16 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 17 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 18 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 19 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 20 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.78 -20.60 10.97 55.55 0.61 -20.00 16 22 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 26 C -0.09 -2.38 8.23 -38.45 -0.32 -2.69 16 27 O -0.19 -2.61 10.78 5.38 0.06 -2.55 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.74 7.16 -51.93 -0.37 0.37 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 1.31 7.17 -51.92 -0.37 0.94 16 40 H 0.40 6.17 6.48 -40.82 -0.26 5.90 16 41 H 0.09 1.56 6.38 -52.48 -0.33 1.22 16 42 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 45 H 0.13 3.81 5.77 -52.49 -0.30 3.51 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -30.65 382.80 -8.95 -39.60 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.27 Total: 9.71 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -3.75 Total: -13.98 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.18 Total: -39.03 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.14 Total: -15.67 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.65 -8.95 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293636803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.652 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds