Wall clock time and date at job start Tue Mar 31 2020 15:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.50699 * 109.47206 * 180.02562 * 3 2 1 5 5 N 1.30255 * 125.61933 * 90.02420 * 4 3 2 6 6 C 1.34480 * 108.69886 * 179.97438 * 5 4 3 7 7 C 1.50700 * 126.16353 * 179.97438 * 6 5 4 8 8 C 1.34324 * 107.66931 * 359.97438 * 6 5 4 9 9 C 1.50704 * 126.44399 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47199 * 89.99367 * 9 8 6 11 11 C 1.34777 * 119.99724 * 180.02562 * 10 9 8 12 12 O 1.21547 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.47890 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.39922 * 120.02089 * 359.72316 * 13 11 10 15 15 C 1.38329 * 120.35352 * 179.78732 * 14 13 11 16 16 C 1.37750 * 120.41571 * 0.46983 * 15 14 13 17 17 C 1.40751 * 120.03512 * 359.78639 * 16 15 14 18 18 C 1.41438 * 120.17590 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99784 * 334.93146 * 18 17 16 20 20 C 1.39934 * 119.99935 * 154.92202 * 18 17 16 21 21 N 1.30828 * 120.00512 * 342.59543 * 20 18 17 22 22 Si 1.86806 * 119.99721 * 162.59121 * 20 18 17 23 23 H 1.48500 * 109.46991 * 60.00880 * 22 20 18 24 24 H 1.48507 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47400 * 300.00307 * 22 20 18 26 26 C 1.38991 * 120.02772 * 180.02562 * 13 11 10 27 27 O 1.33964 * 125.61921 * 269.97928 * 4 3 2 28 28 H 1.09006 * 109.47003 * 300.00347 * 1 2 3 29 29 H 1.09000 * 109.47107 * 59.99885 * 1 2 3 30 30 H 1.08997 * 109.47499 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47153 * 239.99366 * 2 1 3 32 32 H 1.09000 * 109.47107 * 120.00115 * 2 1 3 33 33 H 1.08993 * 109.47065 * 59.99669 * 3 2 1 34 34 H 1.09000 * 109.47138 * 300.00096 * 3 2 1 35 35 H 1.09003 * 109.47242 * 89.97087 * 7 6 5 36 36 H 1.09001 * 109.47575 * 209.97545 * 7 6 5 37 37 H 1.09007 * 109.47125 * 329.97436 * 7 6 5 38 38 H 1.08998 * 109.47126 * 210.00275 * 9 8 6 39 39 H 1.09011 * 109.46815 * 329.99563 * 9 8 6 40 40 H 0.96998 * 120.00213 * 0.02562 * 10 9 8 41 41 H 1.08004 * 119.81994 * 359.97438 * 14 13 11 42 42 H 1.08008 * 119.78929 * 180.23358 * 15 14 13 43 43 H 1.07991 * 119.97855 * 179.76553 * 16 15 14 44 44 H 0.96999 * 120.00474 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.20296 * 359.94749 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3052 1.4430 -1.0598 6 6 5.5919 1.4434 -0.6690 7 6 6.7964 1.4435 -1.5746 8 6 5.6101 1.4435 0.6742 9 6 6.8343 1.4433 1.5530 10 7 7.2315 2.8245 1.8374 11 6 8.3083 3.0705 2.6097 12 8 8.9502 2.1466 3.0696 13 6 8.7090 4.4648 2.8974 14 6 7.9738 5.5288 2.3633 15 6 8.3398 6.8355 2.6315 16 6 9.4373 7.1047 3.4192 17 6 10.1922 6.0473 3.9607 18 6 11.3200 6.3203 4.7694 19 1 11.8488 7.2557 4.6607 20 6 11.7506 5.3784 5.7105 21 7 10.9472 4.4181 6.0898 22 14 13.4728 5.4923 6.4252 23 1 13.6349 6.7943 7.1208 24 1 13.6816 4.3846 7.3922 25 1 14.4709 5.3880 5.3307 26 6 9.8197 4.7192 3.6932 27 8 4.3277 1.4427 1.0880 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 7.0863 2.4712 -1.7935 36 1 7.6220 0.9303 -1.0815 37 1 6.5522 0.9291 -2.5041 38 1 6.6104 0.9297 2.4879 39 1 7.6484 0.9291 1.0418 40 1 6.7194 3.5619 1.4700 41 1 7.1142 5.3287 1.7408 42 1 7.7635 7.6499 2.2176 43 1 9.7189 8.1275 3.6209 44 1 11.2458 3.7650 6.7418 45 1 10.3925 3.9010 4.1042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293636803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:45 Heat of formation + Delta-G solvation = -36.312490 kcal Electronic energy + Delta-G solvation = -26528.177101 eV Core-core repulsion = 22703.342180 eV Total energy + Delta-G solvation = -3824.834921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.53195 -40.95032 -38.88075 -36.69443 -36.39064 -35.83640 -35.53292 -32.98536 -31.91241 -31.29974 -29.50390 -29.16808 -27.20543 -25.76692 -23.96356 -23.20910 -22.81242 -22.41425 -21.60311 -21.32064 -19.64295 -18.35809 -17.94619 -17.46634 -17.09853 -16.72776 -16.53689 -16.43696 -16.03101 -15.66978 -15.41880 -15.07842 -14.72694 -14.49640 -14.36896 -14.28602 -14.22184 -14.11913 -13.70869 -13.45304 -13.25177 -12.95997 -12.95104 -12.80706 -12.67153 -12.54246 -12.30750 -12.21519 -11.93988 -11.90021 -11.70272 -11.64086 -11.52826 -11.07232 -10.96899 -10.33064 -9.76633 -9.50122 -9.40576 -8.66896 -6.38860 0.15081 0.33868 0.99824 1.37015 1.40930 1.48071 1.49907 1.50991 2.04534 2.19384 2.28355 2.77232 2.86291 3.46085 3.67669 3.70298 3.92460 3.93198 3.99639 4.07650 4.21213 4.36607 4.42564 4.52679 4.55564 4.64953 4.68566 4.69993 4.75339 4.88646 4.89299 4.91736 5.00077 5.07581 5.15611 5.17704 5.20965 5.22688 5.30896 5.33102 5.41930 5.50065 5.83238 5.90150 6.03594 6.26281 6.40991 6.59248 6.61236 6.87127 6.92891 7.17517 8.29914 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.002253 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.207829 B =12426.960062 C =12610.419893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.024 4.024 4 C 0.206 3.794 5 N -0.503 5.503 6 C 0.015 3.985 7 C -0.076 4.076 8 C -0.085 4.085 9 C 0.215 3.785 10 N -0.713 5.713 11 C 0.568 3.432 12 O -0.580 6.580 13 C -0.137 4.137 14 C -0.199 4.199 15 C -0.096 4.096 16 C -0.215 4.215 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.253 1.253 24 H -0.272 1.272 25 H -0.260 1.260 26 C -0.127 4.127 27 O -0.206 6.206 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.411 0.589 41 H 0.130 0.870 42 H 0.137 0.863 43 H 0.109 0.891 44 H 0.287 0.713 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.675 -6.465 -12.607 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.062 4.062 4 C -0.001 4.001 5 N -0.233 5.233 6 C -0.106 4.106 7 C -0.133 4.133 8 C -0.138 4.138 9 C 0.092 3.908 10 N -0.367 5.367 11 C 0.359 3.641 12 O -0.461 6.461 13 C -0.140 4.140 14 C -0.219 4.219 15 C -0.113 4.113 16 C -0.235 4.235 17 C 0.065 3.935 18 C -0.525 4.525 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.177 1.177 24 H -0.197 1.197 25 H -0.184 1.184 26 C -0.148 4.148 27 O -0.094 6.094 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.248 0.752 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.506 -7.342 -12.690 22.077 hybrid contribution 0.893 0.152 1.233 1.530 sum -15.614 -7.190 -11.457 20.658 Atomic orbital electron populations 1.21734 0.92965 1.02799 1.02988 1.21498 0.97799 0.93867 1.02421 1.20494 0.78371 1.00451 1.06866 1.27180 0.97463 0.97403 0.78042 1.70449 1.01739 1.20338 1.30787 1.22004 0.94161 1.02259 0.92133 1.20309 0.91013 1.04035 0.97989 1.22864 0.83447 1.12665 0.94803 1.19438 0.89365 0.84228 0.97773 1.45803 1.30000 1.08529 1.52368 1.18658 0.79461 0.89166 0.76860 1.90690 1.55137 1.47015 1.53239 1.19692 0.99372 0.91767 1.03197 1.20794 1.02521 0.91958 1.06596 1.20907 0.96430 0.96399 0.97613 1.21408 0.98461 0.97816 1.05826 1.17953 0.92701 0.91442 0.91416 1.19839 1.11607 1.03940 1.17152 0.89716 1.26857 1.02655 0.93343 0.95704 1.69875 1.37297 1.12911 1.24963 0.85236 0.76788 0.79271 0.78367 1.17682 1.19695 1.18436 1.21442 0.97332 0.97376 0.98622 1.84411 1.16597 1.70039 1.38340 0.91656 0.91445 0.91828 0.91890 0.92192 0.87130 0.86053 0.89632 0.89639 0.89509 0.90473 0.87192 0.75165 0.85275 0.84520 0.87265 0.90233 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 3 C -0.02 -0.31 5.84 29.85 0.17 -0.14 16 4 C 0.21 4.49 7.60 88.34 0.67 5.16 16 5 N -0.50 -12.40 11.29 -291.99 -3.30 -15.70 16 6 C 0.02 0.37 7.11 41.26 0.29 0.66 16 7 C -0.08 -1.44 10.22 71.24 0.73 -0.72 16 8 C -0.09 -2.18 6.75 24.79 0.17 -2.02 16 9 C 0.21 5.96 6.01 85.63 0.51 6.47 16 10 N -0.71 -22.86 5.50 -469.65 -2.58 -25.45 16 11 C 0.57 24.49 7.77 86.80 0.67 25.16 16 12 O -0.58 -29.17 16.33 -3.86 -0.06 -29.23 16 13 C -0.14 -6.43 5.87 -20.13 -0.12 -6.54 16 14 C -0.20 -7.85 9.55 22.70 0.22 -7.63 16 15 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 16 C -0.22 -10.01 9.78 22.77 0.22 -9.78 16 17 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 18 C -0.50 -26.81 9.05 23.47 0.21 -26.60 16 19 H 0.08 4.30 7.90 -2.91 -0.02 4.28 16 20 C 0.03 1.53 5.14 85.25 0.44 1.97 16 21 N -0.82 -45.73 10.97 21.82 0.24 -45.49 16 22 Si 0.98 39.32 29.59 68.60 2.03 41.35 16 23 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 26 C -0.13 -7.00 8.23 23.00 0.19 -6.81 16 27 O -0.21 -5.28 10.78 -3.68 -0.04 -5.32 16 28 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.48 7.16 -2.39 -0.02 1.46 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.11 2.83 7.17 -2.38 -0.02 2.82 16 40 H 0.41 11.55 6.48 -92.71 -0.60 10.95 16 41 H 0.13 3.99 6.38 -2.91 -0.02 3.97 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.11 4.68 8.06 -2.92 -0.02 4.65 16 44 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 45 H 0.10 6.17 5.77 -2.91 -0.02 6.16 16 Total: -1.00 -69.71 382.80 2.09 -67.62 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.42 Total: 34.67 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.38 Total: -22.45 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -5.64 Total: -86.63 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.10 Total: -34.55 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -69.71 2.09 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293636803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.308 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds