Wall clock time and date at job start Tue Mar 31 2020 15:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 C 1.50699 * 109.46782 * 180.02562 * 3 2 1 5 5 C 1.35315 * 126.66741 * 90.00903 * 4 3 2 6 6 C 1.42274 * 103.92180 * 180.25835 * 5 4 3 7 7 C 1.48325 * 126.93630 * 179.73534 * 6 5 4 8 8 O 1.21495 * 120.00380 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00003 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47247 * 34.99860 * 10 9 7 12 12 C 1.52996 * 109.47396 * 155.00438 * 10 9 7 13 13 C 1.50705 * 109.46653 * 294.99907 * 12 10 9 14 14 H 1.07996 * 120.00516 * 0.02562 * 13 12 10 15 15 C 1.37885 * 119.99609 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99672 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47237 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46766 * 119.99911 * 17 15 13 20 20 H 1.48502 * 109.47093 * 239.99822 * 17 15 13 21 21 C 1.50700 * 109.46978 * 275.00281 * 10 9 7 22 22 C 1.38234 * 120.00087 * 319.72692 * 21 10 9 23 23 C 1.38238 * 120.00012 * 179.81007 * 22 21 10 24 24 C 1.38237 * 119.99951 * 0.39550 * 23 22 21 25 25 C 1.38231 * 119.99935 * 359.85726 * 24 23 22 26 26 C 1.38237 * 120.00161 * 359.95578 * 25 24 23 27 27 N 1.30988 * 106.12371 * 359.57000 * 6 5 4 28 28 O 1.20907 * 111.43822 * 0.45961 * 27 6 5 29 29 H 1.09003 * 109.46843 * 59.99411 * 1 2 3 30 30 H 1.08995 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46839 * 300.00150 * 1 2 3 32 32 H 1.09006 * 109.46568 * 240.00123 * 2 1 3 33 33 H 1.09003 * 109.46843 * 120.00589 * 2 1 3 34 34 H 1.09001 * 109.46735 * 60.00650 * 3 2 1 35 35 H 1.08998 * 109.47178 * 299.99957 * 3 2 1 36 36 H 1.08002 * 128.03456 * 359.97438 * 5 4 3 37 37 H 0.96994 * 120.00308 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47026 * 54.99979 * 12 10 9 39 39 H 1.08999 * 109.47427 * 175.00317 * 12 10 9 40 40 H 0.97001 * 119.99283 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99971 * 359.97438 * 22 21 10 42 42 H 1.07996 * 119.99921 * 180.23190 * 23 22 21 43 43 H 1.07997 * 119.99966 * 179.83417 * 24 23 22 44 44 H 1.07998 * 120.00063 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00077 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.3547 1.4425 -1.0864 6 6 5.6670 1.4360 -0.5368 7 6 6.9470 1.4280 -1.2861 8 8 6.9399 1.4270 -2.5011 9 7 8.1182 1.4229 -0.6192 10 6 9.3826 1.4156 -1.3593 11 1 9.2739 2.0045 -2.2701 12 6 10.4863 2.0206 -0.4894 13 6 10.1831 3.4744 -0.2325 14 1 9.2922 3.9218 -0.6477 15 6 11.0427 4.2329 0.5336 16 7 12.1273 3.6878 1.0396 17 14 10.6673 6.0349 0.8515 18 1 9.3972 6.4027 0.1755 19 1 10.5336 6.2624 2.3129 20 1 11.7724 6.8721 0.3193 21 6 9.7463 -0.0021 -1.7182 22 6 9.5441 -1.0199 -0.8049 23 6 9.8741 -2.3209 -1.1355 24 6 10.4140 -2.6030 -2.3765 25 6 10.6211 -1.5845 -3.2878 26 6 10.2875 -0.2840 -2.9586 27 7 5.5165 1.4421 0.7644 28 8 4.3478 1.4420 1.0741 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 1.6768 1.9563 -0.8900 36 1 4.0693 1.4425 -2.1280 37 1 8.1241 1.4241 0.3507 38 1 10.5350 1.4864 0.4594 39 1 11.4431 1.9346 -1.0044 40 1 12.7318 4.2214 1.5789 41 1 9.1258 -0.7990 0.1660 42 1 9.7127 -3.1166 -0.4234 43 1 10.6743 -3.6190 -2.6338 44 1 11.0432 -1.8048 -4.2572 45 1 10.4496 0.5118 -3.6705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295253977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:09 Heat of formation + Delta-G solvation = 28.375221 kcal Electronic energy + Delta-G solvation = -27147.286658 eV Core-core repulsion = 23325.256807 eV Total energy + Delta-G solvation = -3822.029851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.03864 -39.65252 -38.40215 -35.99298 -35.28699 -33.86632 -32.76002 -31.87546 -30.97129 -30.45941 -28.82764 -27.26899 -25.50255 -24.07581 -22.80606 -22.31810 -22.01470 -21.89792 -20.10679 -19.59928 -17.78040 -17.56678 -16.89548 -16.51869 -16.17104 -15.59832 -15.45177 -14.92318 -14.64269 -14.45086 -14.19623 -14.14755 -13.79781 -13.56731 -13.26879 -13.04085 -12.77761 -12.72255 -12.54312 -12.12344 -11.96483 -11.71885 -11.63712 -11.46743 -11.14841 -11.04590 -10.95504 -10.75718 -10.61897 -10.51600 -10.34504 -9.83889 -9.81024 -9.47909 -9.30187 -8.59489 -8.51050 -8.46243 -8.21494 -6.09412 -4.12882 1.22291 1.71071 1.75844 1.78943 2.89953 3.26970 3.35096 3.38523 3.39987 3.50903 4.10256 4.20771 4.40031 4.44364 4.60801 4.63517 4.91422 4.98175 5.16716 5.24426 5.25907 5.26932 5.27910 5.34501 5.38725 5.41891 5.46727 5.53426 5.68657 5.78340 5.87144 5.89050 5.90452 5.91712 6.12918 6.32756 6.40905 6.53375 6.77297 6.83118 6.83761 7.07541 7.38442 7.47258 7.56731 7.86639 7.89142 8.14674 8.24101 8.54170 8.92627 9.52344 11.01177 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008216 B = 0.003924 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.373253 B = 7133.994873 C = 9814.193840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.037 4.037 4 C -0.040 4.040 5 C -0.181 4.181 6 C -0.017 4.017 7 C 0.593 3.407 8 O -0.533 6.533 9 N -0.681 5.681 10 C 0.184 3.816 11 H 0.091 0.909 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.074 4.074 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.107 4.107 27 N -0.328 5.328 28 O 0.120 5.880 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.178 0.822 37 H 0.408 0.592 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 -9.949 -2.730 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.075 4.075 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.177 4.177 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.330 5.330 10 C 0.080 3.920 11 H 0.109 0.891 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.075 4.075 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.152 4.152 25 C -0.141 4.141 26 C -0.125 4.125 27 N -0.028 5.028 28 O 0.045 5.955 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.195 0.805 37 H 0.243 0.757 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.864 -9.888 -2.500 19.708 hybrid contribution -0.310 1.039 0.006 1.085 sum -17.174 -8.849 -2.494 19.480 Atomic orbital electron populations 1.21766 0.94912 1.02150 1.02126 1.21574 0.96274 0.95109 1.03231 1.20224 0.83426 0.98925 1.04936 1.24443 0.96094 1.04076 0.85715 1.22408 0.89867 1.06676 1.01339 1.23694 0.97105 1.06862 0.90012 1.16898 0.81731 0.77407 0.86428 1.90753 1.86742 1.50887 1.12484 1.45892 1.04796 1.71331 1.10952 1.20366 0.83716 0.90631 0.97271 0.89144 1.19413 0.91996 0.95630 0.94351 1.21159 1.08120 0.94642 1.32034 0.92394 1.24980 0.94956 0.98509 0.95634 1.69967 1.12310 1.36306 1.34384 0.86534 0.78386 0.85148 0.77975 1.19753 1.20953 1.20908 1.20507 0.97003 0.96317 0.93675 1.20931 1.00001 0.92498 0.99152 1.21044 1.00024 0.96431 0.96751 1.21006 1.01010 0.98733 0.94410 1.21044 1.00723 0.93028 0.99283 1.21016 0.98798 0.96581 0.96121 1.74225 0.96854 1.15969 1.15772 1.84785 1.11196 1.66111 1.33421 0.92428 0.92317 0.92382 0.91246 0.91239 0.89153 0.88377 0.80467 0.75681 0.95596 0.94411 0.92883 0.86598 0.86679 0.86760 0.86502 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.04 -0.25 5.78 -27.88 -0.16 -0.41 16 4 C -0.04 -0.44 6.73 -35.35 -0.24 -0.68 16 5 C -0.18 -2.39 10.92 -39.07 -0.43 -2.81 16 6 C -0.02 -0.29 7.19 -82.53 -0.59 -0.88 16 7 C 0.59 11.58 7.81 -12.11 -0.09 11.48 16 8 O -0.53 -11.51 16.61 5.37 0.09 -11.42 16 9 N -0.68 -13.51 4.04 -55.72 -0.23 -13.73 16 10 C 0.18 3.88 2.11 -69.08 -0.15 3.73 16 11 H 0.09 2.03 7.44 -51.93 -0.39 1.65 16 12 C 0.02 0.57 4.49 -27.88 -0.13 0.45 16 13 C -0.52 -14.18 8.84 -34.43 -0.30 -14.48 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.07 -1.41 4.91 -104.62 -0.51 -1.93 16 22 C -0.11 -1.90 9.32 -39.58 -0.37 -2.27 16 23 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 27 N -0.33 -5.30 11.84 33.29 0.39 -4.91 16 28 O 0.12 1.62 11.18 17.23 0.19 1.81 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.41 7.93 8.36 -40.82 -0.34 7.59 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.12 1.98 7.73 -52.49 -0.41 1.58 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.12 2.02 8.04 -52.49 -0.42 1.60 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -32.02 390.14 -8.98 -41.01 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.59 Total: 6.67 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.44 Total: -16.61 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.91 Total: -43.87 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.28 Total: -9.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.02 -8.98 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295253977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.382 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds