Wall clock time and date at job start Tue Mar 31 2020 15:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 C 1.50699 * 109.46782 * 180.02562 * 3 2 1 5 5 C 1.35315 * 126.66741 * 90.00903 * 4 3 2 6 6 C 1.42274 * 103.92180 * 180.25835 * 5 4 3 7 7 C 1.48325 * 126.93630 * 179.73534 * 6 5 4 8 8 O 1.21495 * 120.00380 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00003 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47247 * 34.99860 * 10 9 7 12 12 C 1.52996 * 109.47396 * 155.00438 * 10 9 7 13 13 C 1.50705 * 109.46653 * 294.99907 * 12 10 9 14 14 H 1.07996 * 120.00516 * 0.02562 * 13 12 10 15 15 C 1.37885 * 119.99609 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99672 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47237 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46766 * 119.99911 * 17 15 13 20 20 H 1.48502 * 109.47093 * 239.99822 * 17 15 13 21 21 C 1.50700 * 109.46978 * 275.00281 * 10 9 7 22 22 C 1.38234 * 120.00087 * 319.72692 * 21 10 9 23 23 C 1.38238 * 120.00012 * 179.81007 * 22 21 10 24 24 C 1.38237 * 119.99951 * 0.39550 * 23 22 21 25 25 C 1.38231 * 119.99935 * 359.85726 * 24 23 22 26 26 C 1.38237 * 120.00161 * 359.95578 * 25 24 23 27 27 N 1.30988 * 106.12371 * 359.57000 * 6 5 4 28 28 O 1.20907 * 111.43822 * 0.45961 * 27 6 5 29 29 H 1.09003 * 109.46843 * 59.99411 * 1 2 3 30 30 H 1.08995 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46839 * 300.00150 * 1 2 3 32 32 H 1.09006 * 109.46568 * 240.00123 * 2 1 3 33 33 H 1.09003 * 109.46843 * 120.00589 * 2 1 3 34 34 H 1.09001 * 109.46735 * 60.00650 * 3 2 1 35 35 H 1.08998 * 109.47178 * 299.99957 * 3 2 1 36 36 H 1.08002 * 128.03456 * 359.97438 * 5 4 3 37 37 H 0.96994 * 120.00308 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47026 * 54.99979 * 12 10 9 39 39 H 1.08999 * 109.47427 * 175.00317 * 12 10 9 40 40 H 0.97001 * 119.99283 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99971 * 359.97438 * 22 21 10 42 42 H 1.07996 * 119.99921 * 180.23190 * 23 22 21 43 43 H 1.07997 * 119.99966 * 179.83417 * 24 23 22 44 44 H 1.07998 * 120.00063 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00077 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.3547 1.4425 -1.0864 6 6 5.6670 1.4360 -0.5368 7 6 6.9470 1.4280 -1.2861 8 8 6.9399 1.4270 -2.5011 9 7 8.1182 1.4229 -0.6192 10 6 9.3826 1.4156 -1.3593 11 1 9.2739 2.0045 -2.2701 12 6 10.4863 2.0206 -0.4894 13 6 10.1831 3.4744 -0.2325 14 1 9.2922 3.9218 -0.6477 15 6 11.0427 4.2329 0.5336 16 7 12.1273 3.6878 1.0396 17 14 10.6673 6.0349 0.8515 18 1 9.3972 6.4027 0.1755 19 1 10.5336 6.2624 2.3129 20 1 11.7724 6.8721 0.3193 21 6 9.7463 -0.0021 -1.7182 22 6 9.5441 -1.0199 -0.8049 23 6 9.8741 -2.3209 -1.1355 24 6 10.4140 -2.6030 -2.3765 25 6 10.6211 -1.5845 -3.2878 26 6 10.2875 -0.2840 -2.9586 27 7 5.5165 1.4421 0.7644 28 8 4.3478 1.4420 1.0741 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 1.6768 1.9563 -0.8900 36 1 4.0693 1.4425 -2.1280 37 1 8.1241 1.4241 0.3507 38 1 10.5350 1.4864 0.4594 39 1 11.4431 1.9346 -1.0044 40 1 12.7318 4.2214 1.5789 41 1 9.1258 -0.7990 0.1660 42 1 9.7127 -3.1166 -0.4234 43 1 10.6743 -3.6190 -2.6338 44 1 11.0432 -1.8048 -4.2572 45 1 10.4496 0.5118 -3.6705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295253977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:08 Heat of formation + Delta-G solvation = 10.951493 kcal Electronic energy + Delta-G solvation = -27148.042208 eV Core-core repulsion = 23325.256807 eV Total energy + Delta-G solvation = -3822.785401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.20178 -41.17705 -39.78886 -36.97974 -36.59015 -35.11667 -34.75828 -32.90675 -32.29999 -31.74093 -30.61750 -27.93442 -27.21320 -25.57820 -23.90324 -23.85163 -23.38910 -22.59898 -21.55492 -21.03795 -18.98070 -18.78962 -18.54011 -17.95695 -17.72924 -17.09767 -16.52881 -16.34662 -15.99907 -15.71540 -15.64066 -15.32680 -14.80176 -14.58727 -14.53449 -14.24819 -14.18511 -14.13375 -13.75657 -13.53578 -13.31464 -12.99678 -12.70817 -12.56025 -12.52932 -12.43878 -12.21053 -12.15292 -11.94921 -11.68910 -11.59361 -11.50792 -11.46890 -11.37345 -10.64949 -10.45695 -10.20050 -9.81130 -9.59471 -8.26317 -6.36953 0.03151 0.44383 0.50585 0.63634 1.33998 1.35465 1.47632 1.84559 2.02822 2.07890 2.34954 2.83697 2.95068 3.07866 3.47062 3.87428 3.88770 3.96188 4.06664 4.12162 4.15005 4.16084 4.27361 4.29044 4.36584 4.56491 4.64073 4.68914 4.72358 4.80299 4.82959 4.93756 5.00252 5.03686 5.10220 5.15064 5.30254 5.33659 5.33921 5.48550 5.50874 5.55897 5.59125 5.70678 5.79061 6.08891 6.14003 6.34950 6.74797 6.91292 7.04821 7.31966 8.84723 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008216 B = 0.003924 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.373253 B = 7133.994873 C = 9814.193840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.035 4.035 4 C -0.014 4.014 5 C -0.190 4.190 6 C -0.047 4.047 7 C 0.592 3.408 8 O -0.560 6.560 9 N -0.681 5.681 10 C 0.199 3.801 11 H 0.068 0.932 12 C 0.038 3.962 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.957 3.043 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.128 4.128 27 N -0.349 5.349 28 O 0.131 5.869 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.193 0.807 37 H 0.407 0.593 38 H 0.008 0.992 39 H 0.012 0.988 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 -10.905 -2.834 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.073 4.073 4 C -0.077 4.077 5 C -0.213 4.213 6 C -0.204 4.204 7 C 0.377 3.623 8 O -0.438 6.438 9 N -0.330 5.330 10 C 0.095 3.905 11 H 0.086 0.914 12 C 0.001 3.999 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.783 3.217 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.147 4.147 27 N -0.048 5.048 28 O 0.052 5.948 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.210 0.790 37 H 0.243 0.757 38 H 0.027 0.973 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.913 -10.850 -2.603 21.959 hybrid contribution 0.263 1.252 0.044 1.280 sum -18.650 -9.598 -2.559 21.130 Atomic orbital electron populations 1.21746 0.93557 1.02492 1.02877 1.21559 0.97351 0.94439 1.02702 1.20535 0.79895 0.99808 1.07026 1.25175 0.97541 1.00976 0.84012 1.22633 0.88499 1.07425 1.02747 1.23480 0.96929 1.09404 0.90637 1.17222 0.82394 0.76407 0.86324 1.90714 1.87305 1.52169 1.13617 1.45820 1.04804 1.71571 1.10788 1.19903 0.83217 0.92048 0.95370 0.91392 1.19140 0.92261 0.94746 0.93793 1.21398 1.07833 0.95945 1.31964 0.93187 1.25788 0.94739 1.02853 0.95367 1.70070 1.13194 1.38012 1.35046 0.85513 0.78235 0.79905 0.78088 1.19627 1.20079 1.20100 1.20380 0.99372 0.95252 0.95246 1.21027 1.00925 0.93566 0.98818 1.21419 0.98996 0.95895 0.97940 1.21498 0.98990 1.00402 0.93398 1.21430 0.99637 0.91877 1.00861 1.21197 0.99591 0.98185 0.95715 1.74224 0.98290 1.16689 1.15600 1.84752 1.10668 1.65130 1.34208 0.91658 0.92249 0.91663 0.91811 0.91889 0.87190 0.86136 0.78986 0.75724 0.97320 0.96931 0.92559 0.87180 0.83740 0.82752 0.83302 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 3 C -0.03 -0.36 5.78 29.85 0.17 -0.18 16 4 C -0.01 -0.28 6.73 25.01 0.17 -0.11 16 5 C -0.19 -4.91 10.92 22.60 0.25 -4.66 16 6 C -0.05 -1.61 7.19 42.96 0.31 -1.30 16 7 C 0.59 24.31 7.81 86.93 0.68 24.98 16 8 O -0.56 -25.35 16.61 -3.70 -0.06 -25.41 16 9 N -0.68 -28.82 4.04 -448.51 -1.81 -30.63 16 10 C 0.20 9.00 2.11 44.24 0.09 9.09 16 11 H 0.07 3.32 7.44 -2.39 -0.02 3.30 16 12 C 0.04 2.00 4.49 29.85 0.13 2.13 16 13 C -0.53 -30.31 8.84 25.60 0.23 -30.09 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C 0.01 0.66 5.46 84.66 0.46 1.12 16 16 N -0.92 -55.26 13.29 21.45 0.28 -54.97 16 17 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.10 -4.07 4.91 -19.87 -0.10 -4.17 16 22 C -0.12 -4.52 9.32 22.27 0.21 -4.31 16 23 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 24 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 25 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 26 C -0.13 -4.63 9.67 22.27 0.22 -4.42 16 27 N -0.35 -11.45 11.84 -49.51 -0.59 -12.04 16 28 O 0.13 3.40 11.18 71.82 0.80 4.20 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.41 17.00 8.36 -92.71 -0.78 16.22 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.11 3.97 7.73 -2.91 -0.02 3.95 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 43 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 44 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.12 4.18 8.04 -2.91 -0.02 4.15 16 Total: -1.00 -72.33 390.14 5.26 -67.07 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.22 Total: 27.68 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.38 Total: -22.91 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.11 Total: -97.65 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.74 Total: -21.21 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.33 5.26 -67.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295253977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.022 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds