Wall clock time and date at job start Tue Mar 31 2020 15:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47353 * 2 1 4 4 C 1.50704 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.35304 * 126.66446 * 90.00009 * 4 3 2 6 6 C 1.42273 * 103.92571 * 179.97438 * 5 4 3 7 7 C 1.48330 * 126.94576 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99397 * 359.97438 * 7 6 5 9 9 N 1.34766 * 120.00327 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00394 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46756 * 325.00093 * 10 9 7 12 12 C 1.52993 * 109.47545 * 204.99959 * 10 9 7 13 13 C 1.50699 * 109.47311 * 64.99567 * 12 10 9 14 14 H 1.07996 * 119.99974 * 0.02562 * 13 12 10 15 15 C 1.37886 * 120.00057 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99861 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47106 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46636 * 120.00005 * 17 15 13 20 20 H 1.48497 * 109.47420 * 239.99832 * 17 15 13 21 21 C 1.50702 * 109.47266 * 84.99219 * 10 9 7 22 22 C 1.38234 * 120.00271 * 220.00163 * 21 10 9 23 23 C 1.38230 * 119.99880 * 179.97438 * 22 21 10 24 24 C 1.38235 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99485 * 39.98291 * 21 10 9 27 27 N 1.30994 * 106.11476 * 0.26255 * 6 5 4 28 28 O 1.20897 * 111.44137 * 359.53813 * 27 6 5 29 29 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47029 * 300.00445 * 1 2 3 31 31 H 1.09003 * 109.46546 * 60.00151 * 1 2 3 32 32 H 1.08998 * 109.47029 * 239.99555 * 2 1 3 33 33 H 1.09003 * 109.46546 * 119.99849 * 2 1 3 34 34 H 1.09001 * 109.46933 * 59.99908 * 3 2 1 35 35 H 1.08994 * 109.47268 * 300.00080 * 3 2 1 36 36 H 1.08007 * 128.04307 * 0.02562 * 5 4 3 37 37 H 0.97007 * 120.00135 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47670 * 184.99752 * 12 10 9 39 39 H 1.09010 * 109.47007 * 304.99841 * 12 10 9 40 40 H 0.97004 * 120.00100 * 179.97438 * 16 15 13 41 41 H 1.08001 * 119.99769 * 359.97438 * 22 21 10 42 42 H 1.08000 * 120.00376 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 44 44 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00489 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3555 1.4422 -1.0844 6 6 5.6674 1.4429 -0.5339 7 6 6.9482 1.4435 -1.2821 8 8 6.9419 1.4430 -2.4970 9 7 8.1188 1.4436 -0.6142 10 6 9.3838 1.4436 -1.3532 11 1 9.2729 0.8542 -2.2633 12 6 10.4836 0.8341 -0.4816 13 6 10.1730 -0.6176 -0.2231 14 1 9.2806 -1.0613 -0.6391 15 6 11.0282 -1.3795 0.5447 16 7 12.1146 -0.8391 1.0517 17 14 10.6427 -3.1789 0.8658 18 1 9.3715 -3.5412 0.1891 19 1 11.7434 -4.0231 0.3354 20 1 10.5074 -3.4030 2.3275 21 6 9.7549 2.8591 -1.7136 22 6 10.2985 3.1366 -2.9540 23 6 10.6384 4.4350 -3.2847 24 6 10.4343 5.4560 -2.3755 25 6 9.8897 5.1786 -1.1355 26 6 9.5514 3.8799 -0.8041 27 7 5.5158 1.4376 0.7672 28 8 4.3469 1.4430 1.0760 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.0711 1.4424 -2.1263 37 1 8.1238 1.4436 0.3558 38 1 11.4413 0.9148 -0.9959 39 1 10.5342 1.3694 0.4667 40 1 12.7161 -1.3749 1.5922 41 1 10.4576 2.3389 -3.6645 42 1 11.0628 4.6519 -4.2539 43 1 10.7040 6.4698 -2.6322 44 1 9.7306 5.9762 -0.4249 45 1 9.1268 3.6631 0.1650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295253986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:12 Heat of formation + Delta-G solvation = 28.421431 kcal Electronic energy + Delta-G solvation = -27138.028825 eV Core-core repulsion = 23316.000978 eV Total energy + Delta-G solvation = -3822.027847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.04133 -39.65334 -38.40143 -35.98132 -35.28687 -33.86583 -32.76064 -31.86997 -30.97051 -30.45867 -28.82915 -27.26155 -25.50271 -24.07597 -22.80124 -22.31581 -22.00745 -21.89335 -20.10598 -19.59982 -17.75255 -17.59820 -16.89274 -16.51492 -16.17205 -15.59507 -15.44071 -14.92206 -14.64010 -14.44833 -14.20444 -14.13926 -13.79257 -13.55745 -13.26324 -13.03941 -12.77446 -12.72202 -12.54444 -12.12222 -11.95425 -11.69699 -11.63604 -11.46172 -11.14884 -11.03475 -10.95032 -10.75665 -10.61974 -10.51708 -10.34510 -9.83868 -9.81099 -9.47770 -9.30206 -8.59517 -8.51068 -8.46290 -8.21464 -6.09441 -4.12932 1.22337 1.71072 1.75910 1.78982 2.90072 3.26843 3.34975 3.38396 3.39820 3.51035 4.10293 4.20870 4.39992 4.45049 4.62309 4.64883 4.92563 4.98532 5.17163 5.24547 5.25986 5.27171 5.28358 5.34564 5.39943 5.42421 5.47136 5.53615 5.70650 5.80181 5.87609 5.89351 5.91707 5.92411 6.12926 6.32755 6.40916 6.53381 6.77241 6.83154 6.83802 7.07554 7.38474 7.47216 7.56718 7.86563 7.89147 8.14707 8.24092 8.54146 8.92558 9.52276 11.01136 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007877 B = 0.004017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3553.892415 B = 6968.506909 C = 9771.949652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.036 4.036 4 C -0.040 4.040 5 C -0.181 4.181 6 C -0.017 4.017 7 C 0.593 3.407 8 O -0.533 6.533 9 N -0.681 5.681 10 C 0.184 3.816 11 H 0.091 0.909 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.074 4.074 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.108 4.108 27 N -0.328 5.328 28 O 0.121 5.879 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.178 0.822 37 H 0.408 0.592 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.925 8.562 -2.756 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.074 4.074 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.177 4.177 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.330 5.330 10 C 0.080 3.920 11 H 0.109 0.891 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.075 4.075 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.126 4.126 27 N -0.028 5.028 28 O 0.045 5.955 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.195 0.805 37 H 0.243 0.757 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.813 8.498 -2.523 19.007 hybrid contribution -0.314 -1.013 0.006 1.061 sum -17.127 7.484 -2.517 18.860 Atomic orbital electron populations 1.21763 0.94911 1.02184 1.02056 1.21581 0.96265 0.95091 1.03365 1.20219 0.83407 0.98969 1.04845 1.24444 0.96114 1.04076 0.85707 1.22406 0.89863 1.06680 1.01347 1.23697 0.97109 1.06866 0.90006 1.16897 0.81730 0.77408 0.86428 1.90754 1.86746 1.50889 1.12483 1.45891 1.04798 1.71325 1.10951 1.20364 0.83675 0.90661 0.97281 0.89146 1.19412 0.92043 0.95594 0.94335 1.21159 1.08111 0.94744 1.31959 0.92396 1.24978 0.94946 0.98506 0.95636 1.69965 1.12373 1.36306 1.34309 0.86535 0.78404 0.85134 0.77979 1.19766 1.20904 1.20947 1.20507 0.97005 0.96307 0.93688 1.21012 0.98797 0.96610 0.96095 1.21043 1.00710 0.93023 0.99298 1.21007 1.00991 0.98731 0.94433 1.21046 0.99999 0.96463 0.96743 1.20933 0.99989 0.92493 0.99183 1.74223 0.96835 1.15970 1.15799 1.84781 1.11205 1.66101 1.33414 0.92291 0.92409 0.92456 0.91189 0.91172 0.89199 0.88404 0.80468 0.75676 0.94414 0.95595 0.92880 0.86047 0.86500 0.86756 0.86673 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.04 -0.24 5.78 -27.88 -0.16 -0.40 16 4 C -0.04 -0.44 6.73 -35.35 -0.24 -0.68 16 5 C -0.18 -2.39 10.92 -39.08 -0.43 -2.82 16 6 C -0.02 -0.29 7.19 -82.52 -0.59 -0.88 16 7 C 0.59 11.58 7.81 -12.11 -0.09 11.49 16 8 O -0.53 -11.51 16.61 5.37 0.09 -11.42 16 9 N -0.68 -13.51 4.03 -55.73 -0.22 -13.73 16 10 C 0.18 3.88 2.12 -69.08 -0.15 3.73 16 11 H 0.09 2.03 7.44 -51.93 -0.39 1.65 16 12 C 0.02 0.58 4.49 -27.89 -0.13 0.45 16 13 C -0.52 -14.18 8.84 -34.44 -0.30 -14.49 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.07 -1.41 4.91 -104.62 -0.51 -1.93 16 22 C -0.11 -1.88 9.67 -39.59 -0.38 -2.26 16 23 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.11 -1.90 9.32 -39.58 -0.37 -2.27 16 27 N -0.33 -5.30 11.84 33.30 0.39 -4.91 16 28 O 0.12 1.62 11.18 17.25 0.19 1.81 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.18 2.03 8.06 -52.48 -0.42 1.61 16 37 H 0.41 7.93 8.36 -40.82 -0.34 7.59 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.12 2.02 8.04 -52.49 -0.42 1.60 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.12 1.98 7.72 -52.49 -0.41 1.58 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -32.02 390.13 -8.98 -41.00 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.59 Total: 6.79 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -4.44 Total: -16.73 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.91 Total: -43.85 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.28 Total: -9.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.02 -8.98 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295253986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.419 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds