Wall clock time and date at job start Tue Mar 31 2020 15:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47353 * 2 1 4 4 C 1.50704 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.35304 * 126.66446 * 90.00009 * 4 3 2 6 6 C 1.42273 * 103.92571 * 179.97438 * 5 4 3 7 7 C 1.48330 * 126.94576 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99397 * 359.97438 * 7 6 5 9 9 N 1.34766 * 120.00327 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00394 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46756 * 325.00093 * 10 9 7 12 12 C 1.52993 * 109.47545 * 204.99959 * 10 9 7 13 13 C 1.50699 * 109.47311 * 64.99567 * 12 10 9 14 14 H 1.07996 * 119.99974 * 0.02562 * 13 12 10 15 15 C 1.37886 * 120.00057 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99861 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47106 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46636 * 120.00005 * 17 15 13 20 20 H 1.48497 * 109.47420 * 239.99832 * 17 15 13 21 21 C 1.50702 * 109.47266 * 84.99219 * 10 9 7 22 22 C 1.38234 * 120.00271 * 220.00163 * 21 10 9 23 23 C 1.38230 * 119.99880 * 179.97438 * 22 21 10 24 24 C 1.38235 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99485 * 39.98291 * 21 10 9 27 27 N 1.30994 * 106.11476 * 0.26255 * 6 5 4 28 28 O 1.20897 * 111.44137 * 359.53813 * 27 6 5 29 29 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47029 * 300.00445 * 1 2 3 31 31 H 1.09003 * 109.46546 * 60.00151 * 1 2 3 32 32 H 1.08998 * 109.47029 * 239.99555 * 2 1 3 33 33 H 1.09003 * 109.46546 * 119.99849 * 2 1 3 34 34 H 1.09001 * 109.46933 * 59.99908 * 3 2 1 35 35 H 1.08994 * 109.47268 * 300.00080 * 3 2 1 36 36 H 1.08007 * 128.04307 * 0.02562 * 5 4 3 37 37 H 0.97007 * 120.00135 * 359.97438 * 9 7 6 38 38 H 1.08999 * 109.47670 * 184.99752 * 12 10 9 39 39 H 1.09010 * 109.47007 * 304.99841 * 12 10 9 40 40 H 0.97004 * 120.00100 * 179.97438 * 16 15 13 41 41 H 1.08001 * 119.99769 * 359.97438 * 22 21 10 42 42 H 1.08000 * 120.00376 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 44 44 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00489 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3555 1.4422 -1.0844 6 6 5.6674 1.4429 -0.5339 7 6 6.9482 1.4435 -1.2821 8 8 6.9419 1.4430 -2.4970 9 7 8.1188 1.4436 -0.6142 10 6 9.3838 1.4436 -1.3532 11 1 9.2729 0.8542 -2.2633 12 6 10.4836 0.8341 -0.4816 13 6 10.1730 -0.6176 -0.2231 14 1 9.2806 -1.0613 -0.6391 15 6 11.0282 -1.3795 0.5447 16 7 12.1146 -0.8391 1.0517 17 14 10.6427 -3.1789 0.8658 18 1 9.3715 -3.5412 0.1891 19 1 11.7434 -4.0231 0.3354 20 1 10.5074 -3.4030 2.3275 21 6 9.7549 2.8591 -1.7136 22 6 10.2985 3.1366 -2.9540 23 6 10.6384 4.4350 -3.2847 24 6 10.4343 5.4560 -2.3755 25 6 9.8897 5.1786 -1.1355 26 6 9.5514 3.8799 -0.8041 27 7 5.5158 1.4376 0.7672 28 8 4.3469 1.4430 1.0760 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.0711 1.4424 -2.1263 37 1 8.1238 1.4436 0.3558 38 1 11.4413 0.9148 -0.9959 39 1 10.5342 1.3694 0.4667 40 1 12.7161 -1.3749 1.5922 41 1 10.4576 2.3389 -3.6645 42 1 11.0628 4.6519 -4.2539 43 1 10.7040 6.4698 -2.6322 44 1 9.7306 5.9762 -0.4249 45 1 9.1268 3.6631 0.1650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295253986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:11 Heat of formation + Delta-G solvation = 10.986275 kcal Electronic energy + Delta-G solvation = -27138.784870 eV Core-core repulsion = 23316.000978 eV Total energy + Delta-G solvation = -3822.783892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.20471 -41.17803 -39.78790 -36.98036 -36.59294 -35.11709 -34.76019 -32.90946 -32.30158 -31.73976 -30.61923 -27.93555 -27.21414 -25.57903 -23.90365 -23.85123 -23.38849 -22.60671 -21.55437 -21.03981 -18.92123 -18.86804 -18.52545 -17.95740 -17.72610 -17.10109 -16.53054 -16.34345 -16.00570 -15.72307 -15.63614 -15.32605 -14.80216 -14.59465 -14.53017 -14.24752 -14.18716 -14.13541 -13.75664 -13.53728 -13.31510 -12.99883 -12.71120 -12.55988 -12.53501 -12.43996 -12.21059 -12.15782 -11.94817 -11.69048 -11.59576 -11.51510 -11.46722 -11.37589 -10.65093 -10.45788 -10.20150 -9.81063 -9.59397 -8.26473 -6.37120 0.03160 0.44453 0.50687 0.63619 1.33660 1.35153 1.47242 1.84541 2.02524 2.08288 2.34695 2.83734 2.95098 3.07662 3.47194 3.87533 3.88800 3.96253 4.06607 4.11910 4.14758 4.16100 4.27452 4.28412 4.36530 4.56429 4.63663 4.68998 4.72423 4.79742 4.83065 4.93583 4.99421 5.03677 5.10220 5.15152 5.30156 5.33160 5.33521 5.48507 5.50099 5.55969 5.59229 5.70516 5.79096 6.08840 6.14051 6.34888 6.74597 6.91265 7.04864 7.31776 8.84547 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007877 B = 0.004017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3553.892415 B = 6968.506909 C = 9771.949652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.033 4.033 4 C -0.014 4.014 5 C -0.190 4.190 6 C -0.047 4.047 7 C 0.592 3.408 8 O -0.560 6.560 9 N -0.681 5.681 10 C 0.199 3.801 11 H 0.068 0.932 12 C 0.038 3.962 13 C -0.534 4.534 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.957 3.043 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.102 4.102 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.125 4.125 27 N -0.349 5.349 28 O 0.131 5.869 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.193 0.807 37 H 0.407 0.593 38 H 0.012 0.988 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 9.851 -2.856 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.071 4.071 4 C -0.077 4.077 5 C -0.213 4.213 6 C -0.205 4.205 7 C 0.377 3.623 8 O -0.438 6.438 9 N -0.330 5.330 10 C 0.095 3.905 11 H 0.086 0.914 12 C 0.001 3.999 13 C -0.572 4.572 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.782 3.218 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.103 4.103 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.144 4.144 27 N -0.048 5.048 28 O 0.053 5.947 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.210 0.790 37 H 0.243 0.757 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.167 0.833 43 H 0.173 0.827 44 H 0.163 0.837 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.870 9.789 -2.624 21.420 hybrid contribution 0.264 -1.350 0.043 1.376 sum -18.607 8.439 -2.581 20.593 Atomic orbital electron populations 1.21740 0.93431 1.02435 1.02981 1.21573 0.97477 0.94709 1.02549 1.20526 0.79856 0.99549 1.07173 1.25179 0.97573 1.00985 0.83997 1.22633 0.88496 1.07410 1.02759 1.23483 0.96932 1.09417 0.90636 1.17221 0.82396 0.76408 0.86323 1.90715 1.87311 1.52174 1.13616 1.45819 1.04807 1.71565 1.10788 1.19900 0.83190 0.92072 0.95373 0.91410 1.19137 0.92294 0.94707 0.93783 1.21399 1.07828 0.96061 1.31905 0.93210 1.25781 0.94740 1.02817 0.95367 1.70067 1.13253 1.38000 1.34958 0.85519 0.78231 0.79935 0.78093 1.19686 1.20066 1.20063 1.20381 0.99375 0.95249 0.95268 1.21192 0.99594 0.98213 0.95688 1.21429 0.99626 0.91873 1.00874 1.21500 0.98983 1.00384 0.93419 1.21423 0.98966 0.95935 0.97923 1.21031 1.00908 0.93553 0.98862 1.74222 0.98274 1.16682 1.15628 1.84748 1.10676 1.65112 1.34206 0.92454 0.91516 0.91501 0.92023 0.92138 0.86996 0.85926 0.78983 0.75719 0.96931 0.97314 0.92551 0.86344 0.83301 0.82744 0.83716 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.39 16 2 C -0.13 -1.36 5.92 30.59 0.18 -1.18 16 3 C -0.03 -0.34 5.78 29.85 0.17 -0.17 16 4 C -0.01 -0.28 6.73 25.01 0.17 -0.12 16 5 C -0.19 -4.90 10.92 22.60 0.25 -4.66 16 6 C -0.05 -1.62 7.19 42.96 0.31 -1.31 16 7 C 0.59 24.32 7.81 86.93 0.68 25.00 16 8 O -0.56 -25.37 16.61 -3.71 -0.06 -25.43 16 9 N -0.68 -28.84 4.03 -448.53 -1.81 -30.64 16 10 C 0.20 9.00 2.12 44.24 0.09 9.10 16 11 H 0.07 3.31 7.44 -2.39 -0.02 3.30 16 12 C 0.04 2.01 4.49 29.85 0.13 2.14 16 13 C -0.53 -30.37 8.84 25.60 0.23 -30.15 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.68 5.46 84.66 0.46 1.15 16 16 N -0.92 -55.22 13.29 21.45 0.28 -54.94 16 17 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C -0.10 -4.08 4.91 -19.87 -0.10 -4.18 16 22 C -0.13 -4.63 9.67 22.27 0.22 -4.42 16 23 C -0.12 -3.45 10.05 22.27 0.22 -3.22 16 24 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 25 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 26 C -0.13 -4.52 9.32 22.27 0.21 -4.31 16 27 N -0.35 -11.46 11.84 -49.50 -0.59 -12.04 16 28 O 0.13 3.40 11.18 71.90 0.80 4.21 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.19 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.41 17.01 8.36 -92.70 -0.78 16.23 16 38 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.12 4.17 8.04 -2.91 -0.02 4.15 16 42 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 44 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 45 H 0.11 3.97 7.72 -2.91 -0.02 3.95 16 Total: -1.00 -72.45 390.13 5.26 -67.19 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.22 Total: 27.76 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 4.38 Total: -23.15 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -2.11 Total: -97.62 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.74 Total: -21.22 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -72.45 5.26 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295253986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.177 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds