Wall clock time and date at job start Tue Mar 31 2020 16:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 C 1.50702 * 109.47451 * 239.99804 * 2 1 3 5 5 H 1.07998 * 120.00285 * 240.00323 * 4 2 1 6 6 C 1.37880 * 119.99361 * 60.00108 * 4 2 1 7 7 N 1.31512 * 120.00448 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99367 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47443 * 59.99907 * 8 6 4 10 10 H 1.48503 * 109.46956 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47015 * 299.99735 * 8 6 4 12 12 C 1.52998 * 109.46783 * 119.99878 * 2 1 3 13 13 N 1.46503 * 109.47561 * 300.00080 * 12 2 1 14 14 C 1.35167 * 124.19902 * 270.02876 * 13 12 2 15 15 O 1.21229 * 127.28097 * 356.41577 * 14 13 12 16 16 C 1.51071 * 105.43244 * 176.44861 * 14 13 12 17 17 H 1.09004 * 111.85585 * 249.81288 * 16 14 13 18 18 C 1.50584 * 111.73544 * 124.48980 * 16 14 13 19 19 C 1.38716 * 117.97778 * 53.98608 * 18 16 14 20 20 C 1.37955 * 120.60305 * 178.99496 * 19 18 16 21 21 C 1.38272 * 119.47502 * 359.85179 * 20 19 18 22 22 C 1.37745 * 119.92759 * 0.52001 * 21 20 19 23 23 C 1.37847 * 121.81250 * 233.82237 * 18 16 14 24 24 C 1.50508 * 124.47656 * 3.12968 * 23 18 16 25 25 C 1.53012 * 112.36416 * 342.54281 * 24 23 18 26 26 N 1.46397 * 106.82582 * 40.77813 * 25 24 23 27 27 C 1.33244 * 130.99628 * 114.33711 * 26 25 24 28 28 O 1.21542 * 124.17667 * 14.72313 * 27 26 25 29 29 H 1.08995 * 109.47419 * 300.00010 * 1 2 3 30 30 H 1.09009 * 109.47374 * 60.00433 * 1 2 3 31 31 H 1.09003 * 109.47619 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47059 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47236 * 299.99849 * 3 2 1 34 34 H 1.09005 * 109.47046 * 59.99807 * 3 2 1 35 35 H 0.96997 * 119.99699 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47078 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47444 * 60.00270 * 12 2 1 38 38 H 1.08008 * 119.69645 * 359.01774 * 19 18 16 39 39 H 1.07997 * 120.26407 * 179.82770 * 20 19 18 40 40 H 1.07998 * 120.03320 * 180.50503 * 21 20 19 41 41 H 1.08000 * 119.53754 * 180.08910 * 22 21 20 42 42 H 1.08994 * 108.91075 * 103.28578 * 24 23 18 43 43 H 1.09002 * 108.90217 * 221.89934 * 24 23 18 44 44 H 1.09005 * 109.97977 * 281.45124 * 25 24 23 45 45 H 1.09003 * 109.97800 * 160.10963 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0307 2.4455 14 6 2.2108 0.9733 3.0655 15 8 3.3046 1.4157 2.7869 16 6 1.2968 1.4267 4.1796 17 1 0.8823 2.4163 3.9871 18 6 1.9829 1.3766 5.5191 19 6 3.1905 2.0452 5.6572 20 6 3.8552 2.0521 6.8660 21 6 3.3071 1.3876 7.9477 22 6 2.1119 0.7172 7.8087 23 6 1.4413 0.6951 6.5879 24 6 0.1733 -0.1135 6.5286 25 6 -0.6793 0.2296 5.3052 26 7 0.2419 0.3941 4.1794 27 6 0.3927 -0.3165 3.0623 28 8 -0.4159 -1.1271 2.6544 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7090 1.1614 -3.4844 36 1 3.1299 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 3.6139 2.5654 4.8106 39 1 4.7964 2.5721 6.9666 40 1 3.8158 1.3941 8.9003 41 1 1.6888 0.2015 8.6581 42 1 0.4306 -1.1721 6.4939 43 1 -0.4103 0.0783 7.4290 44 1 -1.2241 1.1575 5.4793 45 1 -1.3784 -0.5810 5.0992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334971321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:25 Heat of formation + Delta-G solvation = -4.611643 kcal Electronic energy + Delta-G solvation = -29291.805387 eV Core-core repulsion = 25468.345118 eV Total energy + Delta-G solvation = -3823.460269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40359 -39.59430 -38.29889 -36.70818 -35.83124 -34.68325 -32.98757 -31.59502 -31.02694 -29.64549 -26.56810 -26.16752 -25.60504 -25.10465 -23.81862 -22.72172 -22.32578 -20.61751 -19.69230 -18.61697 -17.41238 -17.00562 -16.56471 -15.96831 -15.92415 -15.62477 -15.26379 -15.03581 -14.77255 -14.41548 -14.26368 -13.91348 -13.57665 -13.43788 -13.16492 -12.87675 -12.75815 -12.58433 -12.45162 -12.12806 -11.84213 -11.43163 -11.20898 -11.13921 -11.10114 -10.74550 -10.64572 -10.45871 -10.27760 -10.17877 -10.01674 -9.80732 -9.41920 -9.09784 -8.88551 -8.82439 -8.74065 -8.58578 -8.30095 -5.94355 -4.05735 1.05239 1.16998 1.98544 2.40254 3.22090 3.34099 3.38257 3.38387 3.41735 3.58072 4.17838 4.25446 4.44182 4.49482 4.58131 4.80761 4.86824 4.95002 5.06154 5.15576 5.26702 5.31613 5.41642 5.44328 5.51298 5.73608 5.81512 5.87501 6.11084 6.12005 6.23856 6.30617 6.32617 6.35657 6.47472 6.67259 6.78844 6.87256 7.01624 7.11347 7.18486 7.49818 7.56096 7.70040 7.75441 7.76704 8.13552 8.19596 8.44223 8.51049 8.93526 9.59137 11.06665 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003630 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.985473 B = 7711.049940 C = 8427.509195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.054 3.946 3 C -0.123 4.123 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.129 3.871 13 N -0.565 5.565 14 C 0.534 3.466 15 O -0.463 6.463 16 C 0.126 3.874 17 H 0.135 0.865 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.127 4.127 23 C -0.059 4.059 24 C -0.103 4.103 25 C 0.154 3.846 26 N -0.630 5.630 27 C 0.711 3.289 28 O -0.530 6.530 29 H 0.001 0.999 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.083 0.917 34 H -0.003 1.003 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 2.763 22.167 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.181 4.181 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.309 5.309 14 C 0.320 3.680 15 O -0.333 6.333 16 C 0.018 3.982 17 H 0.152 0.848 18 C -0.090 4.090 19 C -0.114 4.114 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.145 4.145 23 C -0.059 4.059 24 C -0.140 4.140 25 C 0.033 3.967 26 N -0.369 5.369 27 C 0.414 3.586 28 O -0.402 6.402 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.128 2.559 21.597 21.748 hybrid contribution 0.381 -0.349 -0.807 0.959 sum 0.254 2.209 20.789 20.908 Atomic orbital electron populations 1.21733 0.97026 0.99437 0.99495 1.18477 0.93374 0.92816 0.90015 1.21777 0.98575 0.98127 0.99572 1.20883 1.31724 1.12106 0.89874 0.92536 1.24870 0.94822 0.94896 0.98787 1.69821 1.36448 1.22674 1.23234 0.86633 0.79152 0.79785 0.82253 1.20275 1.21339 1.20296 1.22246 0.98924 0.96170 0.81683 1.46815 1.19756 1.35274 1.29005 1.20262 0.85751 0.79409 0.82601 1.90749 1.17873 1.57353 1.67322 1.21041 0.88338 0.95352 0.93431 0.84795 1.19167 0.96174 1.00676 0.92943 1.21300 0.93679 0.98036 0.98401 1.21116 1.00090 0.99983 0.92821 1.21088 0.95764 0.97291 0.98876 1.21172 0.95890 1.00585 0.96828 1.19476 0.96652 0.97046 0.92772 1.20951 0.93873 1.00043 0.99173 1.21369 0.90346 1.03242 0.81773 1.47391 1.35513 1.33233 1.20792 1.15504 0.81958 0.81183 0.79940 1.90974 1.44204 1.36884 1.68161 0.97957 0.90214 0.95057 0.95168 0.89817 0.98366 0.92986 0.90109 0.90073 0.84497 0.85602 0.85967 0.85993 0.89804 0.89115 0.90013 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 7.06 37.16 0.26 -2.77 16 2 C 0.05 1.35 0.57 -155.66 -0.09 1.26 16 3 C -0.12 -3.05 7.37 37.16 0.27 -2.78 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -14.00 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.66 9.35 55.43 0.52 -24.15 16 8 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.13 2.82 4.69 -4.04 -0.02 2.80 16 13 N -0.56 -10.98 2.15 -121.03 -0.26 -11.24 16 14 C 0.53 9.46 5.77 -10.63 -0.06 9.40 16 15 O -0.46 -8.97 15.54 5.60 0.09 -8.89 16 16 C 0.13 1.75 3.83 -69.50 -0.27 1.48 16 17 H 0.13 1.62 8.14 -51.93 -0.42 1.19 16 18 C -0.09 -1.08 5.43 -104.64 -0.57 -1.64 16 19 C -0.10 -1.13 9.01 -39.51 -0.36 -1.49 16 20 C -0.12 -1.20 10.07 -39.67 -0.40 -1.60 16 21 C -0.11 -0.98 10.03 -39.75 -0.40 -1.38 16 22 C -0.13 -1.12 9.54 -39.37 -0.38 -1.50 16 23 C -0.06 -0.61 5.80 -104.46 -0.61 -1.22 16 24 C -0.10 -0.86 5.75 -27.97 -0.16 -1.02 16 25 C 0.15 1.52 7.10 -4.09 -0.03 1.49 16 26 N -0.63 -8.97 2.96 -174.14 -0.51 -9.49 16 27 C 0.71 13.23 6.91 -88.66 -0.61 12.62 16 28 O -0.53 -11.36 15.98 5.33 0.09 -11.27 16 29 H 0.00 0.03 6.10 -51.93 -0.32 -0.28 16 30 H 0.08 2.20 6.07 -51.92 -0.32 1.89 16 31 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 34 H 0.00 -0.06 6.25 -51.93 -0.32 -0.39 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 36 H 0.08 1.74 7.99 -51.93 -0.41 1.32 16 37 H 0.08 1.78 7.93 -51.93 -0.41 1.37 16 38 H 0.14 1.70 6.80 -52.48 -0.36 1.34 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.79 8.04 -52.49 -0.42 0.37 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -31.68 353.13 -9.77 -41.45 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.21 Total: 0.64 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.77 Total: 1.42 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.26 Total: -44.87 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.17 Total: -20.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.68 -9.77 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334971321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.842 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds