Wall clock time and date at job start Tue Mar 31 2020 16:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 C 1.50702 * 109.47451 * 239.99804 * 2 1 3 5 5 H 1.07998 * 120.00285 * 240.00323 * 4 2 1 6 6 C 1.37880 * 119.99361 * 60.00108 * 4 2 1 7 7 N 1.31512 * 120.00448 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99367 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47443 * 59.99907 * 8 6 4 10 10 H 1.48503 * 109.46956 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47015 * 299.99735 * 8 6 4 12 12 C 1.52998 * 109.46783 * 119.99878 * 2 1 3 13 13 N 1.46503 * 109.47561 * 300.00080 * 12 2 1 14 14 C 1.35167 * 124.19902 * 270.02876 * 13 12 2 15 15 O 1.21229 * 127.28097 * 356.41577 * 14 13 12 16 16 C 1.51071 * 105.43244 * 176.44861 * 14 13 12 17 17 H 1.09004 * 111.85585 * 249.81288 * 16 14 13 18 18 C 1.50584 * 111.73544 * 124.48980 * 16 14 13 19 19 C 1.38716 * 117.97778 * 53.98608 * 18 16 14 20 20 C 1.37955 * 120.60305 * 178.99496 * 19 18 16 21 21 C 1.38272 * 119.47502 * 359.85179 * 20 19 18 22 22 C 1.37745 * 119.92759 * 0.52001 * 21 20 19 23 23 C 1.37847 * 121.81250 * 233.82237 * 18 16 14 24 24 C 1.50508 * 124.47656 * 3.12968 * 23 18 16 25 25 C 1.53012 * 112.36416 * 342.54281 * 24 23 18 26 26 N 1.46397 * 106.82582 * 40.77813 * 25 24 23 27 27 C 1.33244 * 130.99628 * 114.33711 * 26 25 24 28 28 O 1.21542 * 124.17667 * 14.72313 * 27 26 25 29 29 H 1.08995 * 109.47419 * 300.00010 * 1 2 3 30 30 H 1.09009 * 109.47374 * 60.00433 * 1 2 3 31 31 H 1.09003 * 109.47619 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47059 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47236 * 299.99849 * 3 2 1 34 34 H 1.09005 * 109.47046 * 59.99807 * 3 2 1 35 35 H 0.96997 * 119.99699 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47078 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47444 * 60.00270 * 12 2 1 38 38 H 1.08008 * 119.69645 * 359.01774 * 19 18 16 39 39 H 1.07997 * 120.26407 * 179.82770 * 20 19 18 40 40 H 1.07998 * 120.03320 * 180.50503 * 21 20 19 41 41 H 1.08000 * 119.53754 * 180.08910 * 22 21 20 42 42 H 1.08994 * 108.91075 * 103.28578 * 24 23 18 43 43 H 1.09002 * 108.90217 * 221.89934 * 24 23 18 44 44 H 1.09005 * 109.97977 * 281.45124 * 25 24 23 45 45 H 1.09003 * 109.97800 * 160.10963 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0307 2.4455 14 6 2.2108 0.9733 3.0655 15 8 3.3046 1.4157 2.7869 16 6 1.2968 1.4267 4.1796 17 1 0.8823 2.4163 3.9871 18 6 1.9829 1.3766 5.5191 19 6 3.1905 2.0452 5.6572 20 6 3.8552 2.0521 6.8660 21 6 3.3071 1.3876 7.9477 22 6 2.1119 0.7172 7.8087 23 6 1.4413 0.6951 6.5879 24 6 0.1733 -0.1135 6.5286 25 6 -0.6793 0.2296 5.3052 26 7 0.2419 0.3941 4.1794 27 6 0.3927 -0.3165 3.0623 28 8 -0.4159 -1.1271 2.6544 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7090 1.1614 -3.4844 36 1 3.1299 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 3.6139 2.5654 4.8106 39 1 4.7964 2.5721 6.9666 40 1 3.8158 1.3941 8.9003 41 1 1.6888 0.2015 8.6581 42 1 0.4306 -1.1721 6.4939 43 1 -0.4103 0.0783 7.4290 44 1 -1.2241 1.1575 5.4793 45 1 -1.3784 -0.5810 5.0992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334971321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:24 Heat of formation + Delta-G solvation = -21.610879 kcal Electronic energy + Delta-G solvation = -29292.542530 eV Core-core repulsion = 25468.345118 eV Total energy + Delta-G solvation = -3824.197411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.72406 -40.50298 -39.73286 -38.19757 -37.35804 -36.06403 -34.20642 -32.95248 -32.34677 -30.61971 -27.94578 -27.72484 -27.46634 -27.11084 -24.81488 -23.82954 -23.36079 -21.83273 -20.93698 -20.21685 -18.67954 -18.36627 -17.93873 -17.69322 -17.02717 -16.76295 -16.61535 -16.25643 -16.03383 -15.79777 -15.63273 -15.06302 -14.79761 -14.66926 -14.55682 -14.27427 -14.05410 -13.94846 -13.50281 -13.27665 -13.20596 -13.08882 -12.72611 -12.61635 -12.55367 -12.30546 -12.26337 -12.15907 -12.03866 -11.94387 -11.60167 -11.47245 -11.20852 -10.80130 -10.48965 -10.40247 -10.04004 -9.74178 -9.55895 -8.03066 -6.21315 0.25685 0.43023 0.61573 1.12580 1.44356 1.45070 1.52245 1.92279 2.05420 2.45025 2.74739 3.00256 3.19982 3.29542 3.70853 3.84187 3.88679 4.06632 4.18567 4.21443 4.30466 4.38094 4.44027 4.50581 4.57030 4.57552 4.67916 4.76628 4.77803 4.88618 4.93863 5.03209 5.06439 5.09877 5.15922 5.17295 5.42255 5.49201 5.53090 5.56406 5.58671 5.61259 5.62309 6.01179 6.05670 6.09893 6.15872 6.33701 6.38734 6.82657 7.07429 7.46246 8.96394 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003630 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.985473 B = 7711.049940 C = 8427.509195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.048 3.952 3 C -0.104 4.104 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.140 3.860 13 N -0.576 5.576 14 C 0.526 3.474 15 O -0.486 6.486 16 C 0.137 3.863 17 H 0.153 0.847 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.065 4.065 24 C -0.096 4.096 25 C 0.143 3.857 26 N -0.616 5.616 27 C 0.705 3.295 28 O -0.567 6.567 29 H 0.008 0.992 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.009 0.991 35 H 0.260 0.740 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 2.731 25.128 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.047 3.953 3 C -0.162 4.162 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.019 3.981 13 N -0.320 5.320 14 C 0.314 3.686 15 O -0.357 6.357 16 C 0.030 3.970 17 H 0.170 0.830 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.146 4.146 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.066 4.066 24 C -0.133 4.133 25 C 0.023 3.977 26 N -0.355 5.355 27 C 0.408 3.592 28 O -0.443 6.443 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.099 0.901 43 H 0.148 0.852 44 H 0.127 0.873 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.231 2.554 24.620 24.753 hybrid contribution 0.436 -0.302 -1.621 1.706 sum 0.205 2.252 22.999 23.110 Atomic orbital electron populations 1.21483 0.97495 0.98074 0.98502 1.18484 0.92869 0.92913 0.91052 1.21543 0.97718 0.98112 0.98830 1.21211 1.32021 1.12418 0.91057 0.92611 1.25587 0.94990 0.95565 1.01439 1.69951 1.37047 1.23590 1.23710 0.85682 0.78731 0.78724 0.78884 1.19895 1.20994 1.19765 1.21816 0.98683 0.95750 0.81831 1.46823 1.20628 1.35904 1.28619 1.20953 0.85839 0.78604 0.83236 1.90726 1.18975 1.57848 1.68193 1.21046 0.87341 0.95573 0.93090 0.82977 1.19092 0.96779 1.02728 0.92347 1.21276 0.94205 0.98927 0.98933 1.21365 1.00629 1.00180 0.92445 1.21480 0.95682 0.95918 0.99549 1.21536 0.95622 0.99971 0.97011 1.19741 0.97497 0.96595 0.92752 1.20975 0.93227 0.99406 0.99711 1.21857 0.90209 1.04854 0.80731 1.47593 1.35712 1.31978 1.20175 1.15650 0.81353 0.81322 0.80908 1.90942 1.45231 1.38718 1.69365 0.97276 0.92551 0.96473 0.96046 0.92183 0.97243 0.93053 0.90249 0.90647 0.86216 0.84085 0.83073 0.82910 0.90088 0.85211 0.87270 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.13 7.06 71.98 0.51 -4.62 16 2 C 0.05 2.45 0.57 -52.93 -0.03 2.42 16 3 C -0.10 -5.33 7.37 71.98 0.53 -4.79 16 4 C -0.53 -29.23 8.01 25.60 0.21 -29.02 16 5 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 6 C 0.02 1.31 5.15 84.66 0.44 1.74 16 7 N -0.90 -51.54 9.35 21.45 0.20 -51.34 16 8 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 C 0.14 6.30 4.69 86.38 0.41 6.71 16 13 N -0.58 -22.80 2.15 -773.53 -1.66 -24.46 16 14 C 0.53 18.85 5.77 87.71 0.51 19.35 16 15 O -0.49 -19.33 15.54 -2.87 -0.04 -19.38 16 16 C 0.14 3.67 3.83 43.37 0.17 3.83 16 17 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 18 C -0.11 -2.47 5.43 -19.88 -0.11 -2.58 16 19 C -0.11 -2.62 9.01 22.32 0.20 -2.42 16 20 C -0.13 -2.25 10.07 22.21 0.22 -2.03 16 21 C -0.11 -1.49 10.03 22.16 0.22 -1.27 16 22 C -0.12 -1.67 9.54 22.41 0.21 -1.45 16 23 C -0.07 -1.15 5.80 -19.76 -0.11 -1.26 16 24 C -0.10 -1.24 5.75 29.79 0.17 -1.07 16 25 C 0.14 2.44 7.10 86.40 0.61 3.05 16 26 N -0.62 -16.84 2.96 -824.00 -2.44 -19.27 16 27 C 0.70 26.33 6.91 179.66 1.24 27.57 16 28 O -0.57 -24.69 15.98 -3.85 -0.06 -24.75 16 29 H 0.01 0.42 6.10 -2.39 -0.01 0.40 16 30 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 31 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 34 H 0.01 0.41 6.25 -2.38 -0.01 0.40 16 35 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.08 3.53 7.99 -2.39 -0.02 3.52 16 37 H 0.08 3.43 7.93 -2.39 -0.02 3.41 16 38 H 0.12 3.06 6.80 -2.91 -0.02 3.04 16 39 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.12 8.04 -2.91 -0.02 1.09 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.13 0.73 8.11 -2.39 -0.02 0.71 16 44 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.10 1.80 8.07 -2.39 -0.02 1.78 16 Total: -1.00 -70.64 353.13 4.42 -66.22 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.01 Total: 12.83 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.39 Total: 14.17 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -3.90 Total: -95.08 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.11 Total: -44.13 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.64 4.42 -66.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334971321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.611 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds