Wall clock time and date at job start Tue Mar 31 2020 14:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46784 * 2 1 4 4 N 1.30171 * 126.80269 * 270.16190 * 3 2 1 5 5 O 1.20927 * 111.60107 * 180.25570 * 4 3 2 6 6 C 1.34033 * 111.56770 * 359.75132 * 5 4 3 7 7 C 1.50707 * 126.77598 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47190 * 269.99868 * 7 6 5 9 9 C 1.35446 * 106.44830 * 359.97438 * 6 5 4 10 10 C 1.50699 * 128.00906 * 179.97438 * 9 6 5 11 11 C 1.50701 * 109.47351 * 89.99490 * 10 9 6 12 12 O 1.21288 * 119.99843 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.39124 * 120.00238 * 184.92058 * 13 11 10 15 15 C 1.38648 * 120.28450 * 331.07282 * 14 13 11 16 16 C 1.38222 * 120.03444 * 180.25500 * 15 14 13 17 17 C 1.38868 * 120.61523 * 359.74296 * 16 15 14 18 18 C 1.36463 * 120.57707 * 359.97438 * 17 16 15 19 19 C 1.40735 * 119.94377 * 0.02562 * 18 17 16 20 20 C 1.41070 * 120.30234 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00144 * 205.07764 * 20 19 18 22 22 C 1.39957 * 119.99928 * 25.07528 * 20 19 18 23 23 N 1.30859 * 120.00087 * 17.59364 * 22 20 19 24 24 Si 1.86806 * 120.00080 * 197.59044 * 22 20 19 25 25 H 1.48498 * 109.47009 * 265.01870 * 24 22 20 26 26 H 1.48498 * 109.46850 * 25.02199 * 24 22 20 27 27 H 1.48501 * 109.46939 * 145.01872 * 24 22 20 28 28 H 1.09003 * 109.47022 * 299.99535 * 1 2 3 29 29 H 1.08996 * 109.47537 * 60.00014 * 1 2 3 30 30 H 1.09003 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46716 * 240.00248 * 2 1 3 32 32 H 1.09000 * 109.46941 * 120.00407 * 2 1 3 33 33 H 1.09000 * 109.46874 * 29.99687 * 7 6 5 34 34 H 1.08999 * 109.47118 * 149.99709 * 7 6 5 35 35 H 1.09003 * 109.47288 * 300.00436 * 8 7 6 36 36 H 1.08999 * 109.47220 * 59.99904 * 8 7 6 37 37 H 1.08998 * 109.47444 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47037 * 329.99938 * 10 9 6 39 39 H 1.09000 * 109.47396 * 209.99705 * 10 9 6 40 40 H 0.97006 * 119.99904 * 4.91693 * 13 11 10 41 41 H 1.08001 * 119.98390 * 359.97074 * 15 14 13 42 42 H 1.08001 * 119.69310 * 179.76062 * 16 15 14 43 43 H 1.07999 * 119.70812 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.02847 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1570 -1.0423 5 8 2.6839 3.2553 -0.7252 6 6 2.7357 3.3946 0.6069 7 6 3.1761 4.6175 1.3697 8 6 4.6826 4.5435 1.6260 9 6 2.3142 2.2194 1.1321 10 6 2.1829 1.8469 2.5864 11 6 0.8021 2.2035 3.0736 12 8 0.0031 2.7099 2.3145 13 7 0.4547 1.9589 4.3526 14 6 -0.8497 2.1926 4.7761 15 6 -1.6172 3.1739 4.1676 16 6 -2.9108 3.4053 4.5959 17 6 -3.4571 2.6587 5.6316 18 6 -2.7261 1.6828 6.2444 19 6 -1.4065 1.4271 5.8274 20 6 -0.6439 0.4204 6.4560 21 1 0.4347 0.4754 6.4474 22 6 -1.2850 -0.6496 7.0908 23 7 -2.5380 -0.9142 6.8219 24 14 -0.3519 -1.7000 8.3219 25 1 0.1966 -2.8973 7.6356 26 1 0.7621 -0.9090 8.9036 27 1 -1.2729 -2.1288 9.4050 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9502 5.5103 0.7866 34 1 2.6473 4.6618 2.3218 35 1 4.9086 3.6507 2.2090 36 1 5.2115 4.4992 0.6740 37 1 5.0011 5.4277 2.1781 38 1 2.9257 2.3914 3.1694 39 1 2.3438 0.7752 2.7029 40 1 1.1143 1.6198 4.9780 41 1 -1.2025 3.7609 3.3614 42 1 -3.5024 4.1737 4.1205 43 1 -4.4695 2.8516 5.9543 44 1 -3.1599 1.1072 7.0488 45 1 -2.9824 -1.6555 7.2621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339169476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:04 Heat of formation + Delta-G solvation = 26.628075 kcal Electronic energy + Delta-G solvation = -28081.024923 eV Core-core repulsion = 24258.919310 eV Total energy + Delta-G solvation = -3822.105613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.79884 -39.62087 -37.32419 -35.64027 -34.92331 -33.77550 -33.70905 -31.87000 -30.61304 -29.68139 -29.16655 -27.63119 -25.24948 -24.53742 -23.74287 -22.35017 -21.36053 -20.57418 -19.70466 -19.36780 -17.56297 -17.36825 -16.98367 -16.59784 -16.07283 -15.43156 -15.14355 -14.69567 -14.46283 -14.23501 -14.07466 -13.67970 -13.56648 -13.20258 -12.94275 -12.78027 -12.70969 -12.45735 -12.33929 -12.23021 -11.81500 -11.69270 -11.51847 -11.37901 -11.34130 -11.16895 -11.11942 -11.01601 -10.64432 -10.57532 -10.10222 -9.77591 -9.74996 -9.34260 -9.26030 -9.11395 -8.69706 -7.43778 -6.99190 -6.79756 -4.40153 1.56980 2.30418 2.59812 2.82582 2.99934 3.02483 3.16577 3.17856 3.40315 3.83040 3.98098 4.24672 4.43821 4.58139 4.79395 4.83323 4.99778 5.05812 5.08790 5.33051 5.37782 5.38747 5.46078 5.53387 5.61262 5.64077 5.72608 5.76335 5.86467 5.94474 5.99514 6.16024 6.21750 6.33515 6.47049 6.51366 6.59526 6.86893 7.03853 7.13965 7.26788 7.58983 7.69442 7.94755 8.05398 8.09469 8.38214 8.41086 8.52268 8.76883 8.79795 9.00810 10.09449 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.003586 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.227686 B = 7807.046167 C = 8172.950066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.040 3.960 4 N -0.371 5.371 5 O 0.094 5.906 6 C -0.020 4.020 7 C -0.043 4.043 8 C -0.149 4.149 9 C -0.169 4.169 10 C -0.064 4.064 11 C 0.498 3.502 12 O -0.529 6.529 13 N -0.636 5.636 14 C 0.013 3.987 15 C -0.092 4.092 16 C -0.229 4.229 17 C -0.111 4.111 18 C -0.156 4.156 19 C 0.104 3.896 20 C -0.466 4.466 21 H 0.074 0.926 22 C 0.079 3.921 23 N -0.789 5.789 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.260 1.260 27 H -0.275 1.275 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.401 0.599 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 3.421 -5.334 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.120 4.120 4 N -0.076 5.076 5 O 0.030 5.970 6 C -0.083 4.083 7 C -0.081 4.081 8 C -0.206 4.206 9 C -0.173 4.173 10 C -0.105 4.105 11 C 0.284 3.716 12 O -0.406 6.406 13 N -0.277 5.277 14 C -0.081 4.081 15 C -0.113 4.113 16 C -0.249 4.249 17 C -0.130 4.130 18 C -0.176 4.176 19 C 0.100 3.900 20 C -0.496 4.496 21 H 0.092 0.908 22 C -0.139 4.139 23 N -0.414 5.414 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.184 1.184 27 H -0.200 1.200 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.236 0.764 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.362 3.395 -7.171 13.858 hybrid contribution 0.441 -0.963 1.654 1.964 sum 11.804 2.432 -5.517 13.254 Atomic orbital electron populations 1.21722 0.93377 1.02112 1.03341 1.19932 0.96999 0.88069 1.03193 1.23337 1.01112 0.99126 0.88376 1.73775 1.17269 0.92677 1.23905 1.84753 1.62765 1.27048 1.22418 1.24103 1.02373 0.98137 0.83732 1.20097 0.97057 0.92015 0.98940 1.21782 0.93909 1.02650 1.02308 1.20196 1.07154 0.93934 0.96002 1.19919 0.96354 1.03893 0.90321 1.20297 0.89062 0.80146 0.82074 1.90639 1.51938 1.42864 1.55191 1.42838 1.11339 1.63615 1.09948 1.17689 0.85573 1.03214 1.01591 1.20860 0.94430 0.96509 0.99452 1.20324 0.96427 1.04877 1.03295 1.20472 0.97996 0.97269 0.97294 1.20867 0.95484 0.99012 1.02204 1.17374 0.92424 0.90310 0.89849 1.19225 0.94132 1.05177 1.31072 0.90824 1.25834 0.94881 0.97479 0.95731 1.69839 1.11623 1.25330 1.34614 0.86356 0.80395 0.79908 0.80427 1.19632 1.18424 1.19993 0.91121 0.92749 0.91920 0.90475 0.89827 0.89394 0.88592 0.92131 0.92169 0.91299 0.88072 0.87726 0.76385 0.86390 0.89362 0.89510 0.86268 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 37.16 0.37 -1.81 16 2 C -0.04 -0.58 6.44 -27.88 -0.18 -0.76 16 3 C 0.04 0.60 6.58 -82.10 -0.54 0.06 16 4 N -0.37 -5.99 12.07 33.42 0.40 -5.59 16 5 O 0.09 1.41 11.20 17.19 0.19 1.60 16 6 C -0.02 -0.26 6.74 -35.30 -0.24 -0.50 16 7 C -0.04 -0.42 6.30 -27.88 -0.18 -0.60 16 8 C -0.15 -1.12 9.89 37.15 0.37 -0.75 16 9 C -0.17 -2.41 4.81 -104.42 -0.50 -2.91 16 10 C -0.06 -0.83 5.95 -29.04 -0.17 -1.00 16 11 C 0.50 8.82 7.70 -10.99 -0.08 8.74 16 12 O -0.53 -11.29 12.78 5.55 0.07 -11.22 16 13 N -0.64 -12.06 5.10 -9.47 -0.05 -12.11 16 14 C 0.01 0.30 6.44 -83.17 -0.54 -0.24 16 15 C -0.09 -2.19 8.75 -39.44 -0.35 -2.53 16 16 C -0.23 -5.33 10.04 -39.35 -0.39 -5.72 16 17 C -0.11 -2.62 9.97 -39.99 -0.40 -3.02 16 18 C -0.16 -3.93 8.64 -39.28 -0.34 -4.27 16 19 C 0.10 2.60 5.58 -106.65 -0.60 2.01 16 20 C -0.47 -11.18 8.65 -37.87 -0.33 -11.50 16 21 H 0.07 1.60 6.69 -52.49 -0.35 1.25 16 22 C 0.08 1.85 5.14 -17.32 -0.09 1.76 16 23 N -0.79 -19.47 10.98 55.55 0.61 -18.86 16 24 Si 0.90 17.29 29.60 -169.99 -5.03 12.26 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 26 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 27 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 28 H 0.07 1.26 7.82 -51.93 -0.41 0.86 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.98 7.65 -51.93 -0.40 0.58 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.10 1.18 7.65 -51.93 -0.40 0.78 16 40 H 0.40 6.58 7.34 -40.82 -0.30 6.28 16 41 H 0.12 2.78 5.74 -52.49 -0.30 2.48 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 44 H 0.12 3.08 6.19 -52.48 -0.32 2.76 16 45 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -30.17 377.17 -8.56 -38.73 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.25 Total: 12.54 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -4.18 Total: -23.04 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.97 Total: -36.56 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.26 Total: -9.62 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.17 -8.56 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339169476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.359 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds