Wall clock time and date at job start Tue Mar 31 2020 14:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46784 * 2 1 4 4 N 1.30171 * 126.80269 * 270.16190 * 3 2 1 5 5 O 1.20927 * 111.60107 * 180.25570 * 4 3 2 6 6 C 1.34033 * 111.56770 * 359.75132 * 5 4 3 7 7 C 1.50707 * 126.77598 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47190 * 269.99868 * 7 6 5 9 9 C 1.35446 * 106.44830 * 359.97438 * 6 5 4 10 10 C 1.50699 * 128.00906 * 179.97438 * 9 6 5 11 11 C 1.50701 * 109.47351 * 89.99490 * 10 9 6 12 12 O 1.21288 * 119.99843 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.39124 * 120.00238 * 184.92058 * 13 11 10 15 15 C 1.38648 * 120.28450 * 331.07282 * 14 13 11 16 16 C 1.38222 * 120.03444 * 180.25500 * 15 14 13 17 17 C 1.38868 * 120.61523 * 359.74296 * 16 15 14 18 18 C 1.36463 * 120.57707 * 359.97438 * 17 16 15 19 19 C 1.40735 * 119.94377 * 0.02562 * 18 17 16 20 20 C 1.41070 * 120.30234 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00144 * 205.07764 * 20 19 18 22 22 C 1.39957 * 119.99928 * 25.07528 * 20 19 18 23 23 N 1.30859 * 120.00087 * 17.59364 * 22 20 19 24 24 Si 1.86806 * 120.00080 * 197.59044 * 22 20 19 25 25 H 1.48498 * 109.47009 * 265.01870 * 24 22 20 26 26 H 1.48498 * 109.46850 * 25.02199 * 24 22 20 27 27 H 1.48501 * 109.46939 * 145.01872 * 24 22 20 28 28 H 1.09003 * 109.47022 * 299.99535 * 1 2 3 29 29 H 1.08996 * 109.47537 * 60.00014 * 1 2 3 30 30 H 1.09003 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46716 * 240.00248 * 2 1 3 32 32 H 1.09000 * 109.46941 * 120.00407 * 2 1 3 33 33 H 1.09000 * 109.46874 * 29.99687 * 7 6 5 34 34 H 1.08999 * 109.47118 * 149.99709 * 7 6 5 35 35 H 1.09003 * 109.47288 * 300.00436 * 8 7 6 36 36 H 1.08999 * 109.47220 * 59.99904 * 8 7 6 37 37 H 1.08998 * 109.47444 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47037 * 329.99938 * 10 9 6 39 39 H 1.09000 * 109.47396 * 209.99705 * 10 9 6 40 40 H 0.97006 * 119.99904 * 4.91693 * 13 11 10 41 41 H 1.08001 * 119.98390 * 359.97074 * 15 14 13 42 42 H 1.08001 * 119.69310 * 179.76062 * 16 15 14 43 43 H 1.07999 * 119.70812 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.02847 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1570 -1.0423 5 8 2.6839 3.2553 -0.7252 6 6 2.7357 3.3946 0.6069 7 6 3.1761 4.6175 1.3697 8 6 4.6826 4.5435 1.6260 9 6 2.3142 2.2194 1.1321 10 6 2.1829 1.8469 2.5864 11 6 0.8021 2.2035 3.0736 12 8 0.0031 2.7099 2.3145 13 7 0.4547 1.9589 4.3526 14 6 -0.8497 2.1926 4.7761 15 6 -1.6172 3.1739 4.1676 16 6 -2.9108 3.4053 4.5959 17 6 -3.4571 2.6587 5.6316 18 6 -2.7261 1.6828 6.2444 19 6 -1.4065 1.4271 5.8274 20 6 -0.6439 0.4204 6.4560 21 1 0.4347 0.4754 6.4474 22 6 -1.2850 -0.6496 7.0908 23 7 -2.5380 -0.9142 6.8219 24 14 -0.3519 -1.7000 8.3219 25 1 0.1966 -2.8973 7.6356 26 1 0.7621 -0.9090 8.9036 27 1 -1.2729 -2.1288 9.4050 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9502 5.5103 0.7866 34 1 2.6473 4.6618 2.3218 35 1 4.9086 3.6507 2.2090 36 1 5.2115 4.4992 0.6740 37 1 5.0011 5.4277 2.1781 38 1 2.9257 2.3914 3.1694 39 1 2.3438 0.7752 2.7029 40 1 1.1143 1.6198 4.9780 41 1 -1.2025 3.7609 3.3614 42 1 -3.5024 4.1737 4.1205 43 1 -4.4695 2.8516 5.9543 44 1 -3.1599 1.1072 7.0488 45 1 -2.9824 -1.6555 7.2621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339169476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:03 Heat of formation + Delta-G solvation = 11.319969 kcal Electronic energy + Delta-G solvation = -28081.688732 eV Core-core repulsion = 24258.919310 eV Total energy + Delta-G solvation = -3822.769422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.91163 -41.16389 -39.01230 -36.78698 -35.84194 -35.49833 -35.38350 -32.91691 -31.74992 -31.48602 -30.56116 -29.03071 -27.03536 -25.59358 -24.65417 -23.75730 -22.98153 -22.12500 -20.95277 -20.69042 -19.20000 -18.69852 -18.34007 -17.89329 -17.58710 -16.83057 -16.51019 -16.04849 -15.72784 -15.53303 -15.13577 -15.09518 -14.74010 -14.64389 -14.39734 -14.17090 -13.87925 -13.69328 -13.62168 -13.44506 -13.28458 -13.07266 -12.78042 -12.72298 -12.64188 -12.41063 -12.28299 -12.17109 -12.08583 -11.84398 -11.64545 -11.50740 -11.03895 -11.00091 -10.87528 -10.46575 -10.04793 -9.30766 -8.76312 -8.55654 -6.23410 0.50623 0.88673 1.08976 1.17461 1.44926 1.54617 1.60232 1.89323 2.16608 2.23472 2.58276 2.81362 3.17506 3.46096 3.72023 3.79658 3.87619 4.06982 4.10718 4.26917 4.29142 4.34172 4.42193 4.46193 4.53633 4.57253 4.68075 4.74737 4.80470 4.84898 4.88047 5.02264 5.05545 5.10028 5.10801 5.16083 5.26298 5.27451 5.35413 5.39138 5.49353 5.80201 5.88386 6.18164 6.22727 6.27475 6.68187 6.77980 6.99564 7.05384 7.31514 7.49117 8.36857 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.003586 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.227686 B = 7807.046167 C = 8172.950066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.028 3.972 4 N -0.397 5.397 5 O 0.083 5.917 6 C -0.013 4.013 7 C -0.044 4.044 8 C -0.143 4.143 9 C -0.188 4.188 10 C -0.052 4.052 11 C 0.499 3.501 12 O -0.567 6.567 13 N -0.634 5.634 14 C 0.014 3.986 15 C -0.107 4.107 16 C -0.238 4.238 17 C -0.119 4.119 18 C -0.181 4.181 19 C 0.077 3.923 20 C -0.485 4.485 21 H 0.092 0.908 22 C 0.037 3.963 23 N -0.826 5.826 24 Si 0.980 3.020 25 H -0.265 1.265 26 H -0.250 1.250 27 H -0.276 1.276 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.414 0.586 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 2.909 -4.594 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.131 4.131 4 N -0.105 5.105 5 O 0.022 5.978 6 C -0.077 4.077 7 C -0.082 4.082 8 C -0.201 4.201 9 C -0.192 4.192 10 C -0.091 4.091 11 C 0.288 3.712 12 O -0.447 6.447 13 N -0.277 5.277 14 C -0.081 4.081 15 C -0.127 4.127 16 C -0.258 4.258 17 C -0.137 4.137 18 C -0.201 4.201 19 C 0.073 3.927 20 C -0.514 4.514 21 H 0.110 0.890 22 C -0.178 4.178 23 N -0.452 5.452 24 Si 0.801 3.199 25 H -0.190 1.190 26 H -0.173 1.173 27 H -0.201 1.201 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.251 0.749 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.935 2.899 -6.436 15.621 hybrid contribution -0.393 -0.738 1.341 1.580 sum 13.542 2.161 -5.096 14.630 Atomic orbital electron populations 1.21634 0.94786 1.02528 1.00922 1.20022 0.95554 0.87599 1.04918 1.23748 1.00716 0.99921 0.88672 1.73760 1.18618 0.93296 1.24813 1.84718 1.62917 1.26804 1.23409 1.24785 1.00750 0.98961 0.83178 1.20303 0.98713 0.90796 0.98405 1.21768 0.91782 1.03851 1.02659 1.20403 1.08120 0.94295 0.96423 1.19941 0.93609 1.05803 0.89788 1.21127 0.90537 0.78512 0.80991 1.90623 1.53670 1.44399 1.55975 1.42831 1.10046 1.63863 1.10939 1.17801 0.87316 1.02229 1.00737 1.21014 0.94973 0.97027 0.99734 1.20590 0.96706 1.05252 1.03241 1.20676 0.98854 0.96913 0.97282 1.20905 0.96432 0.99997 1.02795 1.17719 0.92794 0.91339 0.90798 1.19593 0.95103 1.05200 1.31498 0.88967 1.26746 0.95568 0.98568 0.96950 1.69920 1.13382 1.26212 1.35672 0.85212 0.79012 0.78077 0.77573 1.18956 1.17295 1.20113 0.94679 0.93864 0.90082 0.88931 0.87896 0.88510 0.88609 0.91646 0.92251 0.89369 0.84231 0.85487 0.74864 0.86527 0.87532 0.87612 0.87672 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.89 71.98 0.71 -3.41 16 2 C -0.04 -1.08 6.44 29.85 0.19 -0.89 16 3 C 0.03 0.83 6.58 43.58 0.29 1.12 16 4 N -0.40 -12.70 12.07 -49.57 -0.60 -13.30 16 5 O 0.08 2.45 11.20 71.69 0.80 3.25 16 6 C -0.01 -0.33 6.74 25.04 0.17 -0.16 16 7 C -0.04 -0.77 6.30 29.85 0.19 -0.58 16 8 C -0.14 -1.73 9.89 71.98 0.71 -1.01 16 9 C -0.19 -5.06 4.81 -19.74 -0.10 -5.15 16 10 C -0.05 -1.19 5.95 29.10 0.17 -1.02 16 11 C 0.50 17.12 7.70 87.66 0.67 17.79 16 12 O -0.57 -24.27 12.78 -3.05 -0.04 -24.31 16 13 N -0.63 -23.37 5.10 -302.27 -1.54 -24.91 16 14 C 0.01 0.64 6.44 38.88 0.25 0.89 16 15 C -0.11 -5.13 8.75 22.36 0.20 -4.93 16 16 C -0.24 -11.16 10.04 22.42 0.22 -10.94 16 17 C -0.12 -5.67 9.97 22.01 0.22 -5.45 16 18 C -0.18 -9.37 8.64 22.47 0.19 -9.18 16 19 C 0.08 3.91 5.58 -21.18 -0.12 3.79 16 20 C -0.48 -23.01 8.65 23.38 0.20 -22.81 16 21 H 0.09 3.86 6.69 -2.91 -0.02 3.84 16 22 C 0.04 1.71 5.14 85.25 0.44 2.14 16 23 N -0.83 -41.23 10.98 21.83 0.24 -40.99 16 24 Si 0.98 34.49 29.60 68.60 2.03 36.52 16 25 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 26 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 27 H -0.28 -9.68 7.11 99.48 0.71 -8.97 16 28 H 0.03 1.26 7.82 -2.39 -0.02 1.25 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.10 2.16 7.65 -2.39 -0.02 2.14 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 1.71 8.05 -2.39 -0.02 1.69 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.14 2.17 8.08 -2.39 -0.02 2.15 16 39 H 0.13 2.42 7.65 -2.39 -0.02 2.41 16 40 H 0.41 12.78 7.34 -92.70 -0.68 12.10 16 41 H 0.12 5.57 5.74 -2.91 -0.02 5.55 16 42 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 44 H 0.11 5.64 6.19 -2.91 -0.02 5.62 16 45 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 Total: -1.00 -67.33 377.17 5.86 -61.47 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: 0.34 Total: 42.07 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 4.62 Total: -39.81 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.90 Total: -79.20 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.76 Total: -21.06 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -67.33 5.86 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339169476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.791 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds