Wall clock time and date at job start Tue Mar 31 2020 15:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00184 * 2 1 4 4 N 1.46495 * 109.47304 * 124.99827 * 3 2 1 5 5 C 1.46500 * 120.00303 * 274.25998 * 4 3 2 6 6 C 1.50697 * 109.47051 * 263.59946 * 5 4 3 7 7 H 1.07999 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99807 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99988 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99850 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47090 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46629 * 120.00465 * 10 8 6 13 13 H 1.48497 * 109.47452 * 240.00164 * 10 8 6 14 14 C 1.34774 * 119.99812 * 94.25811 * 4 3 2 15 15 O 1.21362 * 120.00143 * 3.79016 * 14 4 3 16 16 C 1.49343 * 120.00127 * 183.78319 * 14 4 3 17 17 O 1.21372 * 119.99892 * 357.91963 * 16 14 4 18 18 N 1.34776 * 119.99800 * 177.91986 * 16 14 4 19 19 C 1.39576 * 119.99904 * 183.35911 * 18 16 14 20 20 C 1.39068 * 119.93439 * 143.30671 * 19 18 16 21 21 C 1.37793 * 120.06489 * 180.02562 * 20 19 18 22 22 C 1.39616 * 119.93284 * 359.97438 * 21 20 19 23 23 C 1.47750 * 120.06390 * 180.02562 * 22 21 20 24 24 C 1.32624 * 120.00073 * 130.45326 * 23 22 21 25 25 C 1.50701 * 119.99957 * 359.50561 * 24 23 22 26 26 C 1.39624 * 119.87211 * 0.27102 * 22 21 20 27 27 C 1.37786 * 119.92732 * 359.49362 * 26 22 21 28 28 H 1.08005 * 119.99697 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00350 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00430 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46730 * 5.00200 * 3 2 1 32 32 H 1.08996 * 109.47110 * 245.00859 * 3 2 1 33 33 H 1.08998 * 109.46975 * 23.60038 * 5 4 3 34 34 H 1.09007 * 109.47126 * 143.59666 * 5 4 3 35 35 H 0.97005 * 120.00054 * 180.02562 * 9 8 6 36 36 H 0.97005 * 120.00192 * 3.35604 * 18 16 14 37 37 H 1.07994 * 119.97138 * 0.02562 * 20 19 18 38 38 H 1.07995 * 120.03274 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.99474 * 310.44323 * 23 22 21 40 40 H 1.07999 * 119.99803 * 179.51556 * 24 23 22 41 41 H 1.08996 * 109.46984 * 64.32667 * 25 24 23 42 42 H 1.08996 * 109.46829 * 184.33342 * 25 24 23 43 43 H 1.09001 * 109.46938 * 304.33074 * 25 24 23 44 44 H 1.07996 * 120.03482 * 179.69687 * 26 22 21 45 45 H 1.08002 * 119.96252 * 180.20717 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5325 1.7776 2.4485 6 6 2.8756 3.2332 2.6348 7 1 3.3857 3.7724 1.8504 8 6 2.5372 3.8767 3.8064 9 7 1.9156 3.2201 4.7614 10 14 2.9631 5.6807 4.0376 11 1 3.6563 6.1850 2.8251 12 1 1.7173 6.4594 4.2550 13 1 3.8534 5.8321 5.2164 14 6 4.2738 0.9466 0.9605 15 8 4.6739 0.6430 -0.1443 16 6 5.2001 0.8931 2.1308 17 8 4.8107 1.2328 3.2290 18 7 6.4685 0.4677 1.9673 19 6 7.3133 0.3510 3.0722 20 6 8.2296 -0.6931 3.1380 21 6 9.0645 -0.8112 4.2278 22 6 8.9903 0.1190 5.2663 23 6 9.8846 -0.0045 6.4359 24 6 10.5745 1.0470 6.8571 25 6 10.4549 2.3648 6.1360 26 6 8.0659 1.1633 5.1998 27 6 7.2370 1.2789 4.1053 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4527 1.6469 2.5188 34 1 3.0211 1.1870 3.2236 35 1 1.6772 3.6729 5.5855 36 1 6.7943 0.2426 1.0818 37 1 8.2868 -1.4121 2.3343 38 1 9.7755 -1.6224 4.2786 39 1 9.9762 -0.9509 6.9479 40 1 11.2222 0.9586 7.7169 41 1 9.4355 2.7390 6.2297 42 1 11.1474 3.0831 6.5746 43 1 10.6952 2.2253 5.0820 44 1 8.0029 1.8815 6.0039 45 1 6.5240 2.0884 4.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340622969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:41 Heat of formation + Delta-G solvation = 16.046151 kcal Electronic energy + Delta-G solvation = -27586.998526 eV Core-core repulsion = 23764.434046 eV Total energy + Delta-G solvation = -3822.564480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60025 -39.25373 -37.86936 -36.06647 -35.42647 -33.75381 -33.20706 -32.08946 -30.88207 -29.46145 -27.57723 -27.11759 -26.20892 -23.92721 -22.85646 -22.62445 -21.47202 -19.93893 -19.15814 -19.14108 -17.58901 -16.91949 -16.54189 -16.02417 -15.79212 -15.24865 -15.19986 -15.08794 -14.52949 -14.39320 -14.30241 -13.91520 -13.64490 -13.44588 -12.93738 -12.83009 -12.73071 -12.53800 -12.34689 -12.27974 -11.88347 -11.68378 -11.53477 -11.18980 -11.05215 -10.94191 -10.88876 -10.81762 -10.47934 -10.20905 -10.02597 -9.69365 -9.24813 -9.14207 -8.85566 -8.68785 -8.26140 -7.89696 -7.70189 -6.05238 -4.08698 1.09293 1.56555 2.02594 2.34553 2.41625 2.98816 3.27282 3.35339 3.38863 3.75440 4.01860 4.15360 4.43200 4.76547 4.92260 5.02236 5.03979 5.10200 5.22034 5.26911 5.30717 5.43727 5.45325 5.62747 5.64464 5.69643 5.80386 5.84991 5.98091 6.07418 6.17514 6.21866 6.28482 6.48407 6.51040 6.57495 6.60312 6.70408 6.81944 6.83332 6.97595 7.16135 7.34485 7.45233 7.55092 7.83582 8.07823 8.17398 8.34094 8.61777 8.94260 9.54519 11.03365 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.003933 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.274029 B = 7118.241975 C = 9093.211309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.137 3.863 4 N -0.553 5.553 5 C 0.217 3.783 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.070 3.930 9 N -0.887 5.887 10 Si 0.891 3.109 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.508 3.492 15 O -0.561 6.561 16 C 0.494 3.506 17 O -0.437 6.437 18 N -0.662 5.662 19 C 0.155 3.845 20 C -0.147 4.147 21 C -0.094 4.094 22 C -0.079 4.079 23 C -0.122 4.122 24 C -0.150 4.150 25 C -0.133 4.133 26 C -0.090 4.090 27 C -0.116 4.116 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.262 0.738 36 H 0.416 0.584 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.128 0.872 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 -7.194 -1.592 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.015 3.985 4 N -0.283 5.283 5 C 0.099 3.901 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.133 4.133 9 N -0.525 5.525 10 Si 0.719 3.281 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.443 6.443 16 C 0.276 3.724 17 O -0.305 6.305 18 N -0.311 5.311 19 C 0.061 3.939 20 C -0.167 4.167 21 C -0.112 4.112 22 C -0.080 4.080 23 C -0.140 4.140 24 C -0.168 4.168 25 C -0.190 4.190 26 C -0.108 4.108 27 C -0.136 4.136 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.253 0.747 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.146 0.854 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.354 -7.028 -1.182 13.405 hybrid contribution 0.243 0.832 -0.087 0.871 sum 11.598 -6.196 -1.269 13.210 Atomic orbital electron populations 1.23799 0.95709 1.01783 1.00916 1.23293 0.96174 0.98907 0.99563 1.20613 0.92226 0.95346 0.90329 1.48283 1.07497 1.58877 1.13609 1.20206 0.96163 0.96428 0.77294 1.21280 1.38686 0.94586 1.01574 0.92712 1.24811 0.94951 0.97994 0.95525 1.69934 1.40057 1.36210 1.06330 0.86555 0.78166 0.85193 0.78180 1.19885 1.20979 1.20877 1.19729 0.83749 0.79453 0.88020 1.90651 1.76536 1.51475 1.25602 1.20432 0.82487 0.79114 0.90403 1.90906 1.73500 1.40276 1.25769 1.43225 1.10930 1.66884 1.10019 1.17812 0.92252 0.94573 0.89274 1.20821 0.98695 0.97282 0.99912 1.20899 0.98728 0.98556 0.93064 1.18982 0.97559 0.96416 0.95054 1.21606 0.97380 0.98786 0.96243 1.23258 0.99186 0.94971 0.99359 1.21066 1.02577 0.95040 1.00296 1.21235 0.94439 0.97472 0.97672 1.21369 0.99525 0.99049 0.93689 0.88667 0.88276 0.87712 0.89356 0.89419 0.94993 0.90183 0.92853 0.74716 0.85723 0.85887 0.86531 0.87013 0.90743 0.92524 0.91464 0.85442 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 14.32 29.02 0.42 -2.14 16 2 C -0.16 -2.53 9.85 -36.02 -0.35 -2.89 16 3 C 0.14 2.46 5.89 -5.19 -0.03 2.43 16 4 N -0.55 -11.76 2.46 -176.99 -0.43 -12.19 16 5 C 0.22 5.39 4.78 -5.20 -0.02 5.37 16 6 C -0.52 -14.10 8.49 -34.44 -0.29 -14.39 16 7 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 8 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 9 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 10 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.51 10.52 7.67 -11.64 -0.09 10.43 16 15 O -0.56 -11.49 15.98 5.49 0.09 -11.40 16 16 C 0.49 9.94 7.60 -11.64 -0.09 9.85 16 17 O -0.44 -10.16 10.01 5.48 0.05 -10.11 16 18 N -0.66 -10.80 5.31 -10.27 -0.05 -10.86 16 19 C 0.16 2.44 6.26 -83.72 -0.52 1.91 16 20 C -0.15 -1.88 9.95 -39.44 -0.39 -2.27 16 21 C -0.09 -1.12 9.77 -39.23 -0.38 -1.50 16 22 C -0.08 -1.01 5.11 -104.98 -0.54 -1.55 16 23 C -0.12 -1.30 9.72 -37.59 -0.37 -1.67 16 24 C -0.15 -1.46 10.29 -36.21 -0.37 -1.83 16 25 C -0.13 -1.33 8.63 36.01 0.31 -1.02 16 26 C -0.09 -1.30 8.13 -39.23 -0.32 -1.62 16 27 C -0.12 -1.96 8.65 -39.44 -0.34 -2.30 16 28 H 0.09 1.14 8.06 -52.48 -0.42 0.71 16 29 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 30 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.09 1.55 7.76 -51.93 -0.40 1.15 16 32 H 0.09 1.52 7.25 -51.93 -0.38 1.14 16 33 H 0.03 0.83 8.02 -51.93 -0.42 0.41 16 34 H 0.08 2.16 5.26 -52.03 -0.27 1.89 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.42 5.83 8.29 -40.82 -0.34 5.49 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.07 0.80 5.56 -51.93 -0.29 0.51 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 44 H 0.13 1.73 6.12 -52.49 -0.32 1.40 16 45 H 0.14 2.84 6.37 -52.49 -0.33 2.50 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -30.62 381.53 -8.45 -39.07 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.08 Total: 9.55 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.49 Total: -1.37 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.25 Total: -47.82 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.14 Total: -21.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.62 -8.45 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340622969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.119 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds