Wall clock time and date at job start Tue Mar 31 2020 15:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00184 * 2 1 4 4 N 1.46495 * 109.47304 * 124.99827 * 3 2 1 5 5 C 1.46500 * 120.00303 * 274.25998 * 4 3 2 6 6 C 1.50697 * 109.47051 * 263.59946 * 5 4 3 7 7 H 1.07999 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99807 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99988 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99850 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47090 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46629 * 120.00465 * 10 8 6 13 13 H 1.48497 * 109.47452 * 240.00164 * 10 8 6 14 14 C 1.34774 * 119.99812 * 94.25811 * 4 3 2 15 15 O 1.21362 * 120.00143 * 3.79016 * 14 4 3 16 16 C 1.49343 * 120.00127 * 183.78319 * 14 4 3 17 17 O 1.21372 * 119.99892 * 357.91963 * 16 14 4 18 18 N 1.34776 * 119.99800 * 177.91986 * 16 14 4 19 19 C 1.39576 * 119.99904 * 183.35911 * 18 16 14 20 20 C 1.39068 * 119.93439 * 143.30671 * 19 18 16 21 21 C 1.37793 * 120.06489 * 180.02562 * 20 19 18 22 22 C 1.39616 * 119.93284 * 359.97438 * 21 20 19 23 23 C 1.47750 * 120.06390 * 180.02562 * 22 21 20 24 24 C 1.32624 * 120.00073 * 130.45326 * 23 22 21 25 25 C 1.50701 * 119.99957 * 359.50561 * 24 23 22 26 26 C 1.39624 * 119.87211 * 0.27102 * 22 21 20 27 27 C 1.37786 * 119.92732 * 359.49362 * 26 22 21 28 28 H 1.08005 * 119.99697 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00350 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00430 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46730 * 5.00200 * 3 2 1 32 32 H 1.08996 * 109.47110 * 245.00859 * 3 2 1 33 33 H 1.08998 * 109.46975 * 23.60038 * 5 4 3 34 34 H 1.09007 * 109.47126 * 143.59666 * 5 4 3 35 35 H 0.97005 * 120.00054 * 180.02562 * 9 8 6 36 36 H 0.97005 * 120.00192 * 3.35604 * 18 16 14 37 37 H 1.07994 * 119.97138 * 0.02562 * 20 19 18 38 38 H 1.07995 * 120.03274 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.99474 * 310.44323 * 23 22 21 40 40 H 1.07999 * 119.99803 * 179.51556 * 24 23 22 41 41 H 1.08996 * 109.46984 * 64.32667 * 25 24 23 42 42 H 1.08996 * 109.46829 * 184.33342 * 25 24 23 43 43 H 1.09001 * 109.46938 * 304.33074 * 25 24 23 44 44 H 1.07996 * 120.03482 * 179.69687 * 26 22 21 45 45 H 1.08002 * 119.96252 * 180.20717 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5325 1.7776 2.4485 6 6 2.8756 3.2332 2.6348 7 1 3.3857 3.7724 1.8504 8 6 2.5372 3.8767 3.8064 9 7 1.9156 3.2201 4.7614 10 14 2.9631 5.6807 4.0376 11 1 3.6563 6.1850 2.8251 12 1 1.7173 6.4594 4.2550 13 1 3.8534 5.8321 5.2164 14 6 4.2738 0.9466 0.9605 15 8 4.6739 0.6430 -0.1443 16 6 5.2001 0.8931 2.1308 17 8 4.8107 1.2328 3.2290 18 7 6.4685 0.4677 1.9673 19 6 7.3133 0.3510 3.0722 20 6 8.2296 -0.6931 3.1380 21 6 9.0645 -0.8112 4.2278 22 6 8.9903 0.1190 5.2663 23 6 9.8846 -0.0045 6.4359 24 6 10.5745 1.0470 6.8571 25 6 10.4549 2.3648 6.1360 26 6 8.0659 1.1633 5.1998 27 6 7.2370 1.2789 4.1053 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4527 1.6469 2.5188 34 1 3.0211 1.1870 3.2236 35 1 1.6772 3.6729 5.5855 36 1 6.7943 0.2426 1.0818 37 1 8.2868 -1.4121 2.3343 38 1 9.7755 -1.6224 4.2786 39 1 9.9762 -0.9509 6.9479 40 1 11.2222 0.9586 7.7169 41 1 9.4355 2.7390 6.2297 42 1 11.1474 3.0831 6.5746 43 1 10.6952 2.2253 5.0820 44 1 8.0029 1.8815 6.0039 45 1 6.5240 2.0884 4.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340622969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:40 Heat of formation + Delta-G solvation = -0.639684 kcal Electronic energy + Delta-G solvation = -27587.722078 eV Core-core repulsion = 23764.434046 eV Total energy + Delta-G solvation = -3823.288032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09732 -40.57257 -39.29386 -37.61727 -36.63058 -35.09900 -34.77933 -33.82276 -31.98344 -30.54835 -29.46248 -28.30896 -27.48386 -25.54031 -24.54599 -23.77638 -22.73769 -21.28278 -20.54801 -20.05071 -19.12299 -18.54700 -18.38193 -17.50419 -17.05981 -16.83640 -16.51270 -16.19560 -16.16956 -15.89574 -15.54436 -15.12135 -14.87098 -14.66722 -14.44031 -14.27217 -14.15704 -13.73145 -13.72310 -13.59848 -13.28149 -13.05989 -12.85172 -12.79973 -12.65487 -12.39709 -12.30443 -12.09657 -11.91963 -11.80206 -11.65881 -11.40080 -10.73935 -10.48092 -10.13286 -10.06310 -9.86143 -9.63210 -8.84988 -8.16874 -6.26801 -0.06139 0.47153 0.55605 1.11503 1.35474 1.37528 1.41033 1.47970 1.63291 2.19812 2.38779 2.67673 2.86357 3.16238 3.37572 3.89723 3.94849 4.01233 4.05660 4.13279 4.26288 4.40003 4.44394 4.45982 4.53188 4.60880 4.75252 4.80473 4.81936 4.93692 5.00689 5.11125 5.18718 5.24215 5.30147 5.34926 5.41596 5.50919 5.59239 5.64957 5.74074 5.76694 5.82147 5.91855 6.05734 6.08782 6.12862 6.29470 6.76726 6.81029 7.06598 7.39946 8.91388 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.003933 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.274029 B = 7118.241975 C = 9093.211309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.135 3.865 4 N -0.560 5.560 5 C 0.238 3.762 6 C -0.527 4.527 7 H 0.045 0.955 8 C 0.023 3.977 9 N -0.918 5.918 10 Si 0.950 3.050 11 H -0.272 1.272 12 H -0.272 1.272 13 H -0.282 1.282 14 C 0.506 3.494 15 O -0.559 6.559 16 C 0.491 3.509 17 O -0.477 6.477 18 N -0.643 5.643 19 C 0.127 3.873 20 C -0.134 4.134 21 C -0.089 4.089 22 C -0.072 4.072 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.101 4.101 27 C -0.139 4.139 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.017 0.983 34 H 0.059 0.941 35 H 0.264 0.736 36 H 0.427 0.573 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.128 0.872 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.390 -8.321 -1.610 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.204 4.204 3 C 0.014 3.986 4 N -0.289 5.289 5 C 0.118 3.882 6 C -0.566 4.566 7 H 0.063 0.937 8 C -0.176 4.176 9 N -0.558 5.558 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.198 1.198 13 H -0.208 1.208 14 C 0.288 3.712 15 O -0.440 6.440 16 C 0.273 3.727 17 O -0.348 6.348 18 N -0.292 5.292 19 C 0.034 3.966 20 C -0.154 4.154 21 C -0.107 4.107 22 C -0.072 4.072 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.195 4.195 26 C -0.119 4.119 27 C -0.160 4.160 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.266 0.734 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.125 -8.171 -1.248 15.511 hybrid contribution -0.203 1.143 -0.076 1.163 sum 12.922 -7.029 -1.325 14.769 Atomic orbital electron populations 1.24066 0.95022 1.03253 0.97500 1.23148 0.96837 0.97741 1.02638 1.20770 0.91933 0.96767 0.89166 1.48238 1.08328 1.59061 1.13293 1.19679 0.94685 0.95132 0.78654 1.21450 1.38148 0.95659 1.01356 0.93690 1.25539 0.94891 1.01934 0.95281 1.70034 1.41151 1.37823 1.06786 0.85628 0.78212 0.80602 0.77947 1.19610 1.19764 1.20833 1.19876 0.83726 0.79253 0.88296 1.90633 1.76440 1.51472 1.25491 1.20445 0.83524 0.79091 0.89651 1.90900 1.74484 1.42552 1.26885 1.43029 1.09703 1.65444 1.11013 1.18004 0.93580 0.96004 0.89033 1.21132 0.97045 0.96283 1.00908 1.21350 0.98552 0.98921 0.91901 1.19296 0.96622 0.95272 0.96060 1.21750 0.97566 1.00229 0.95981 1.23508 0.98713 0.94105 0.99375 1.21099 1.02247 0.96000 1.00128 1.21284 0.94949 0.98639 0.97073 1.21159 1.00076 0.99122 0.95620 0.86129 0.87773 0.87651 0.89489 0.89033 0.96476 0.92402 0.92717 0.73401 0.82795 0.82218 0.84311 0.84507 0.92015 0.90927 0.92269 0.85442 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 14.32 67.79 0.97 -3.25 16 2 C -0.18 -5.77 9.85 25.65 0.25 -5.52 16 3 C 0.13 4.90 5.89 85.64 0.50 5.40 16 4 N -0.56 -24.57 2.46 -832.22 -2.05 -26.61 16 5 C 0.24 12.36 4.78 85.63 0.41 12.77 16 6 C -0.53 -29.49 8.49 25.60 0.22 -29.27 16 7 H 0.04 2.55 7.81 -2.91 -0.02 2.52 16 8 C 0.02 1.32 5.46 84.66 0.46 1.78 16 9 N -0.92 -54.38 13.29 21.45 0.28 -54.10 16 10 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.51 21.53 7.67 87.24 0.67 22.20 16 15 O -0.56 -22.98 15.98 -3.29 -0.05 -23.03 16 16 C 0.49 20.67 7.60 87.24 0.66 21.34 16 17 O -0.48 -23.67 10.01 -3.31 -0.03 -23.71 16 18 N -0.64 -21.44 5.31 -304.75 -1.62 -23.05 16 19 C 0.13 4.04 6.26 38.31 0.24 4.28 16 20 C -0.13 -3.16 9.95 22.36 0.22 -2.94 16 21 C -0.09 -1.87 9.77 22.50 0.22 -1.65 16 22 C -0.07 -1.72 5.11 -20.10 -0.10 -1.82 16 23 C -0.14 -2.56 9.72 23.62 0.23 -2.33 16 24 C -0.14 -2.35 10.29 24.52 0.25 -2.10 16 25 C -0.14 -2.60 8.63 71.24 0.61 -1.98 16 26 C -0.10 -3.01 8.13 22.50 0.18 -2.83 16 27 C -0.14 -4.98 8.65 22.36 0.19 -4.79 16 28 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.10 2.63 7.84 -2.91 -0.02 2.61 16 30 H 0.11 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.09 3.11 7.76 -2.38 -0.02 3.09 16 32 H 0.09 3.19 7.25 -2.39 -0.02 3.17 16 33 H 0.02 0.93 8.02 -2.39 -0.02 0.91 16 34 H 0.06 3.32 5.26 -4.00 -0.02 3.30 16 35 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 36 H 0.43 11.88 8.29 -92.70 -0.77 11.11 16 37 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.06 1.33 5.56 -2.39 -0.01 1.31 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.20 7.97 -2.39 -0.02 1.18 16 44 H 0.13 3.65 6.12 -2.91 -0.02 3.63 16 45 H 0.10 4.55 6.37 -2.91 -0.02 4.54 16 Total: -1.00 -68.56 381.53 5.00 -63.56 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.23 Total: 30.86 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.20 Total: 9.30 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.38 Total: -103.76 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.09 Total: -46.74 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.56 5.00 -63.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340622969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.921 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds