Wall clock time and date at job start Tue Mar 31 2020 15:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46973 * 2 1 4 4 C 1.52999 * 109.47222 * 240.00375 * 2 1 3 5 5 C 1.52998 * 109.47567 * 120.00201 * 2 1 3 6 6 C 1.50697 * 109.47234 * 60.00014 * 5 2 1 7 7 O 1.21284 * 119.99871 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00198 * 180.02562 * 6 5 2 9 9 C 1.47604 * 122.42828 * 0.02562 * 8 6 5 10 10 S 1.84078 * 102.63707 * 204.79149 * 9 8 6 11 11 C 1.84210 * 93.91050 * 326.56588 * 10 9 8 12 12 C 1.45505 * 122.42842 * 180.02562 * 8 6 5 13 13 H 1.09001 * 108.75517 * 58.13517 * 12 8 6 14 14 C 1.50700 * 108.75400 * 299.90843 * 12 8 6 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 12 8 16 16 N 1.34777 * 119.99675 * 180.28033 * 14 12 8 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 12 18 18 C 1.52999 * 109.46992 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47525 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99441 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00641 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00577 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47293 * 59.99047 * 23 21 19 25 25 H 1.48497 * 109.47533 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46772 * 299.99795 * 23 21 19 27 27 H 1.08997 * 109.47226 * 299.99369 * 1 2 3 28 28 H 1.09000 * 109.47336 * 60.00457 * 1 2 3 29 29 H 1.09004 * 109.46468 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47391 * 299.99972 * 3 2 1 32 32 H 1.09001 * 109.47324 * 60.00179 * 3 2 1 33 33 H 1.08998 * 109.46920 * 299.99635 * 4 2 1 34 34 H 1.09000 * 109.47644 * 59.99357 * 4 2 1 35 35 H 1.09001 * 109.47662 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46762 * 300.00408 * 5 2 1 37 37 H 1.08996 * 109.47540 * 180.02562 * 5 2 1 38 38 H 1.08998 * 110.78026 * 323.07797 * 9 8 6 39 39 H 1.08999 * 110.77054 * 86.50576 * 9 8 6 40 40 H 1.09005 * 111.05049 * 274.24601 * 11 10 9 41 41 H 1.09005 * 111.05334 * 150.26972 * 11 10 9 42 42 H 0.97000 * 119.99894 * 359.71837 * 16 14 12 43 43 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 44 44 H 1.09001 * 109.47621 * 60.00103 * 17 16 14 45 45 H 1.09009 * 109.47378 * 299.99899 * 18 17 16 46 46 H 1.08993 * 109.47209 * 59.99808 * 18 17 16 47 47 H 0.97000 * 120.00289 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2492 7 8 0.8409 -2.5389 0.3393 8 7 1.8631 -2.9718 2.2602 9 6 2.7067 -2.5455 3.3938 10 16 3.4263 -4.1350 3.9805 11 6 1.9277 -5.1169 3.5523 12 6 1.4081 -4.3529 2.3133 13 1 1.7505 -4.8694 1.4166 14 6 -0.0988 -4.3661 2.3329 15 8 -0.7148 -3.3217 2.3045 16 7 -0.7617 -5.5383 2.3872 17 6 -2.2264 -5.5509 2.4124 18 6 -2.7229 -6.9968 2.4733 19 6 -4.2297 -7.0099 2.4986 20 1 -4.7782 -6.0799 2.4741 21 6 -4.9079 -8.2090 2.5540 22 7 -4.2399 -9.3415 2.5844 23 14 -6.7756 -8.2253 2.5846 24 1 -7.2965 -7.5749 1.3555 25 1 -7.2576 -9.6286 2.6439 26 1 -7.2575 -7.4851 3.7784 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -0.2075 2.1392 37 1 3.1301 -0.7209 1.2494 38 1 3.4908 -1.8665 3.0585 39 1 2.1015 -2.0838 4.1739 40 1 1.1986 -5.0919 4.3622 41 1 2.1918 -6.1432 3.2969 42 1 -0.2689 -6.3736 2.4095 43 1 -2.5794 -5.0080 3.2891 44 1 -2.6095 -5.0733 1.5106 45 1 -2.3699 -7.5395 1.5963 46 1 -2.3399 -7.4748 3.3748 47 1 -4.7170 -10.1852 2.6230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342643566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:28 Heat of formation + Delta-G solvation = -76.088352 kcal Electronic energy + Delta-G solvation = -26768.586167 eV Core-core repulsion = 23077.470387 eV Total energy + Delta-G solvation = -3691.115780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84193 -39.15457 -37.05348 -35.83232 -34.87040 -33.01581 -31.98348 -29.51398 -28.39188 -27.64739 -27.28239 -27.18898 -25.15649 -23.75344 -21.44499 -20.73756 -19.53896 -18.81040 -17.77521 -17.48825 -16.95211 -16.38045 -15.63950 -15.44099 -15.21143 -14.85987 -14.62864 -14.52055 -14.39717 -14.29090 -13.90909 -13.88434 -13.16787 -13.02126 -12.82511 -12.56452 -12.40014 -12.30279 -12.23981 -12.05412 -11.84554 -11.40001 -11.24012 -11.19367 -11.05421 -11.00436 -10.87191 -10.76361 -10.67549 -10.34595 -9.85445 -9.63870 -9.48897 -9.31757 -8.83433 -8.57477 -8.38304 -8.24848 -6.11108 -4.14014 1.22643 1.58460 2.34278 2.62177 2.85896 3.30260 3.34078 3.37014 3.58909 3.95537 4.35993 4.39907 4.48752 4.54604 4.55933 4.70346 4.85109 4.92084 5.06350 5.07935 5.24105 5.26018 5.30963 5.31662 5.35745 5.48442 5.65440 5.77212 5.82440 5.86263 6.00977 6.04467 6.13263 6.29942 6.32381 6.40711 6.57417 6.70672 6.84977 7.03494 7.48261 7.58792 7.86307 7.91249 8.08665 8.25424 8.56372 8.91537 9.50917 11.00453 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002987 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.132724 B = 9372.824737 C =11006.418484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.141 4.141 4 C -0.153 4.153 5 C -0.126 4.126 6 C 0.536 3.464 7 O -0.499 6.499 8 N -0.604 5.604 9 C 0.154 3.846 10 S -0.261 6.261 11 C -0.066 4.066 12 C 0.115 3.885 13 H 0.111 0.889 14 C 0.501 3.499 15 O -0.524 6.524 16 N -0.719 5.719 17 C 0.125 3.875 18 C 0.014 3.986 19 C -0.523 4.523 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.396 0.604 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.709 15.890 -0.057 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.198 4.198 4 C -0.210 4.210 5 C -0.166 4.166 6 C 0.325 3.675 7 O -0.372 6.372 8 N -0.341 5.341 9 C -0.080 4.080 10 S -0.035 6.035 11 C -0.215 4.215 12 C 0.005 3.995 13 H 0.129 0.871 14 C 0.283 3.717 15 O -0.400 6.400 16 N -0.370 5.370 17 C 0.003 3.997 18 C -0.024 4.024 19 C -0.561 4.561 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.230 0.770 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.926 15.974 -0.100 25.539 hybrid contribution -1.782 -0.267 -0.229 1.816 sum 18.144 15.707 -0.329 24.000 Atomic orbital electron populations 1.22107 0.93581 1.04732 1.00680 1.20281 0.96785 0.94341 0.93742 1.21892 1.00611 0.95353 1.01969 1.22109 0.99717 1.02962 0.96246 1.21789 1.01827 0.91993 1.00978 1.20433 0.79527 0.87098 0.80465 1.90631 1.35458 1.76331 1.34770 1.48231 1.52064 1.10657 1.23143 1.24246 0.96169 0.96404 0.91162 1.88350 1.24535 1.06521 1.84070 1.24570 0.96338 1.01898 0.98655 1.21189 0.93708 0.84268 1.00316 0.87102 1.20469 0.88911 0.84808 0.77533 1.90685 1.68729 1.31806 1.48739 1.46262 1.09421 1.07415 1.73890 1.21720 0.75773 1.01477 1.00775 1.19312 0.96585 0.88665 0.97793 1.21006 0.90972 0.92732 1.51424 0.92341 1.24985 0.98770 0.95514 0.94942 1.69939 1.35746 0.97428 1.50200 0.86572 0.85190 0.76981 0.78806 1.20081 1.21213 1.20111 0.93514 0.93221 0.89298 0.92810 0.92331 0.92684 0.89809 0.93007 0.93654 0.88853 0.89107 0.86507 0.88461 0.87196 0.84977 0.77039 0.92645 0.92519 0.95919 0.95960 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.18 37.16 0.30 -1.60 16 2 C -0.05 -0.51 0.77 -154.51 -0.12 -0.63 16 3 C -0.14 -1.08 8.47 37.16 0.31 -0.76 16 4 C -0.15 -1.62 8.18 37.16 0.30 -1.31 16 5 C -0.13 -1.16 3.56 -27.89 -0.10 -1.26 16 6 C 0.54 6.89 6.16 -10.99 -0.07 6.82 16 7 O -0.50 -8.23 10.01 -13.88 -0.14 -8.37 16 8 N -0.60 -6.94 2.76 -169.15 -0.47 -7.41 16 9 C 0.15 1.28 7.21 60.45 0.44 1.71 16 10 S -0.26 -2.39 23.43 -107.50 -2.52 -4.91 16 11 C -0.07 -0.61 6.67 37.98 0.25 -0.36 16 12 C 0.11 1.39 2.87 -68.80 -0.20 1.19 16 13 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.50 8.28 6.46 -10.98 -0.07 8.20 16 15 O -0.52 -10.66 14.59 -13.88 -0.20 -10.87 16 16 N -0.72 -12.09 5.42 -60.30 -0.33 -12.41 16 17 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 18 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 23 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.43 5.51 -51.93 -0.29 1.14 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.11 5.51 -51.93 -0.29 0.82 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.61 7.63 -51.93 -0.40 0.21 16 38 H 0.12 0.66 7.13 -51.93 -0.37 0.29 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 1.08 7.85 -51.93 -0.41 0.67 16 41 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.40 5.59 8.23 -40.82 -0.34 5.25 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -33.57 384.20 -9.63 -43.20 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.97 Total: 2.25 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.48 Total: 1.60 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.06 Total: -45.08 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.34 Total: -19.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.52 Total: -4.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.57 -9.63 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342643566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.889 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds