Wall clock time and date at job start Tue Mar 31 2020 15:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46973 * 2 1 4 4 C 1.52999 * 109.47222 * 240.00375 * 2 1 3 5 5 C 1.52998 * 109.47567 * 120.00201 * 2 1 3 6 6 C 1.50697 * 109.47234 * 60.00014 * 5 2 1 7 7 O 1.21284 * 119.99871 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00198 * 180.02562 * 6 5 2 9 9 C 1.47604 * 122.42828 * 0.02562 * 8 6 5 10 10 S 1.84078 * 102.63707 * 204.79149 * 9 8 6 11 11 C 1.84210 * 93.91050 * 326.56588 * 10 9 8 12 12 C 1.45505 * 122.42842 * 180.02562 * 8 6 5 13 13 H 1.09001 * 108.75517 * 58.13517 * 12 8 6 14 14 C 1.50700 * 108.75400 * 299.90843 * 12 8 6 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 12 8 16 16 N 1.34777 * 119.99675 * 180.28033 * 14 12 8 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 12 18 18 C 1.52999 * 109.46992 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47525 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99441 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00641 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99481 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00577 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47293 * 59.99047 * 23 21 19 25 25 H 1.48497 * 109.47533 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46772 * 299.99795 * 23 21 19 27 27 H 1.08997 * 109.47226 * 299.99369 * 1 2 3 28 28 H 1.09000 * 109.47336 * 60.00457 * 1 2 3 29 29 H 1.09004 * 109.46468 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47391 * 299.99972 * 3 2 1 32 32 H 1.09001 * 109.47324 * 60.00179 * 3 2 1 33 33 H 1.08998 * 109.46920 * 299.99635 * 4 2 1 34 34 H 1.09000 * 109.47644 * 59.99357 * 4 2 1 35 35 H 1.09001 * 109.47662 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46762 * 300.00408 * 5 2 1 37 37 H 1.08996 * 109.47540 * 180.02562 * 5 2 1 38 38 H 1.08998 * 110.78026 * 323.07797 * 9 8 6 39 39 H 1.08999 * 110.77054 * 86.50576 * 9 8 6 40 40 H 1.09005 * 111.05049 * 274.24601 * 11 10 9 41 41 H 1.09005 * 111.05334 * 150.26972 * 11 10 9 42 42 H 0.97000 * 119.99894 * 359.71837 * 16 14 12 43 43 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 44 44 H 1.09001 * 109.47621 * 60.00103 * 17 16 14 45 45 H 1.09009 * 109.47378 * 299.99899 * 18 17 16 46 46 H 1.08993 * 109.47209 * 59.99808 * 18 17 16 47 47 H 0.97000 * 120.00289 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2492 7 8 0.8409 -2.5389 0.3393 8 7 1.8631 -2.9718 2.2602 9 6 2.7067 -2.5455 3.3938 10 16 3.4263 -4.1350 3.9805 11 6 1.9277 -5.1169 3.5523 12 6 1.4081 -4.3529 2.3133 13 1 1.7505 -4.8694 1.4166 14 6 -0.0988 -4.3661 2.3329 15 8 -0.7148 -3.3217 2.3045 16 7 -0.7617 -5.5383 2.3872 17 6 -2.2264 -5.5509 2.4124 18 6 -2.7229 -6.9968 2.4733 19 6 -4.2297 -7.0099 2.4986 20 1 -4.7782 -6.0799 2.4741 21 6 -4.9079 -8.2090 2.5540 22 7 -4.2399 -9.3415 2.5844 23 14 -6.7756 -8.2253 2.5846 24 1 -7.2965 -7.5749 1.3555 25 1 -7.2576 -9.6286 2.6439 26 1 -7.2575 -7.4851 3.7784 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -0.2075 2.1392 37 1 3.1301 -0.7209 1.2494 38 1 3.4908 -1.8665 3.0585 39 1 2.1015 -2.0838 4.1739 40 1 1.1986 -5.0919 4.3622 41 1 2.1918 -6.1432 3.2969 42 1 -0.2689 -6.3736 2.4095 43 1 -2.5794 -5.0080 3.2891 44 1 -2.6095 -5.0733 1.5106 45 1 -2.3699 -7.5395 1.5963 46 1 -2.3399 -7.4748 3.3748 47 1 -4.7170 -10.1852 2.6230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342643566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:28 Heat of formation + Delta-G solvation = -97.024101 kcal Electronic energy + Delta-G solvation = -26769.494010 eV Core-core repulsion = 23077.470387 eV Total energy + Delta-G solvation = -3692.023622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.87372 -40.36619 -38.00913 -36.78515 -36.56307 -34.90401 -33.12921 -31.24917 -29.19907 -28.40685 -28.11903 -27.97979 -26.93112 -24.93326 -23.08185 -22.11215 -20.65189 -19.63641 -18.87225 -18.60205 -18.31198 -17.79529 -16.74330 -16.58378 -16.54661 -16.37608 -15.98629 -15.52041 -15.39277 -15.20622 -15.06750 -14.71324 -14.60081 -14.30525 -14.14823 -13.71864 -13.36197 -13.25470 -13.13545 -12.98137 -12.95035 -12.86349 -12.66157 -12.57107 -12.29746 -12.25391 -12.08738 -11.91162 -11.67231 -11.63374 -11.54270 -11.48124 -10.88699 -10.62208 -10.48215 -10.07186 -9.85610 -8.94717 -8.26333 -6.36825 0.52720 0.84792 1.39150 1.41730 1.42443 1.50021 1.55195 1.76202 2.26073 2.43469 3.07514 3.08313 3.53312 3.57819 3.75030 3.89534 3.90493 4.05552 4.20829 4.25165 4.36124 4.41295 4.44901 4.47513 4.56968 4.61797 4.65189 4.80912 4.83258 4.85628 4.97573 5.00075 5.09440 5.17240 5.23659 5.24852 5.38686 5.45256 5.53589 5.55553 5.61911 5.75853 6.13794 6.14979 6.54483 6.75608 7.14189 7.23873 7.32383 8.85190 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002987 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.132724 B = 9372.824737 C =11006.418484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.051 4.051 3 C -0.134 4.134 4 C -0.150 4.150 5 C -0.121 4.121 6 C 0.526 3.474 7 O -0.544 6.544 8 N -0.607 5.607 9 C 0.152 3.848 10 S -0.257 6.257 11 C -0.062 4.062 12 C 0.123 3.877 13 H 0.116 0.884 14 C 0.499 3.501 15 O -0.565 6.565 16 N -0.714 5.714 17 C 0.146 3.854 18 C 0.026 3.974 19 C -0.550 4.550 20 H 0.055 0.945 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.963 3.037 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.156 0.844 42 H 0.411 0.589 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.007 0.993 46 H 0.014 0.986 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.560 17.137 0.811 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.051 4.051 3 C -0.192 4.192 4 C -0.207 4.207 5 C -0.160 4.160 6 C 0.316 3.684 7 O -0.420 6.420 8 N -0.344 5.344 9 C -0.080 4.080 10 S -0.031 6.031 11 C -0.211 4.211 12 C 0.013 3.987 13 H 0.134 0.866 14 C 0.283 3.717 15 O -0.443 6.443 16 N -0.366 5.366 17 C 0.023 3.977 18 C -0.012 4.012 19 C -0.589 4.589 20 H 0.074 0.926 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.787 3.213 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.192 1.192 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.174 0.826 42 H 0.247 0.753 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.025 0.975 46 H 0.032 0.968 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.830 17.217 0.796 27.814 hybrid contribution -2.345 -0.648 -0.512 2.486 sum 19.485 16.569 0.284 25.579 Atomic orbital electron populations 1.22042 0.96049 1.01964 1.00772 1.20298 0.94735 0.96168 0.93946 1.21831 1.01811 0.93157 1.02356 1.22042 1.00827 1.01110 0.96703 1.21876 1.03830 0.89299 1.01043 1.21214 0.78841 0.88461 0.79932 1.90634 1.37425 1.77349 1.36611 1.48387 1.51994 1.10248 1.23732 1.24533 0.96668 0.96516 0.90321 1.88379 1.23840 1.06773 1.84059 1.24576 0.96577 1.02900 0.97058 1.21161 0.89891 0.85604 1.02029 0.86633 1.21302 0.90954 0.83629 0.75805 1.90664 1.70164 1.33144 1.50299 1.46047 1.07686 1.08735 1.74091 1.21148 0.78474 0.98855 0.99262 1.19106 0.95378 0.90231 0.96463 1.21427 0.92745 0.92920 1.51760 0.92647 1.25835 1.03684 0.95083 0.94345 1.70036 1.37640 0.97986 1.50716 0.85534 0.79309 0.77365 0.79075 1.19606 1.20361 1.19250 0.93418 0.93088 0.93389 0.90780 0.92488 0.91859 0.92934 0.93129 0.91675 0.87345 0.85566 0.83168 0.87765 0.87653 0.82580 0.75316 0.93518 0.94668 0.97491 0.96751 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.18 71.98 0.59 -3.25 16 2 C -0.05 -0.95 0.77 -52.18 -0.04 -0.99 16 3 C -0.13 -1.66 8.47 71.98 0.61 -1.05 16 4 C -0.15 -3.06 8.18 71.98 0.59 -2.47 16 5 C -0.12 -1.94 3.56 29.85 0.11 -1.83 16 6 C 0.53 13.17 6.16 87.66 0.54 13.71 16 7 O -0.54 -18.66 10.01 15.53 0.16 -18.51 16 8 N -0.61 -13.15 2.76 -807.46 -2.23 -15.38 16 9 C 0.15 2.09 7.21 127.56 0.92 3.01 16 10 S -0.26 -4.04 23.43 -56.49 -1.32 -5.36 16 11 C -0.06 -1.06 6.67 72.51 0.48 -0.58 16 12 C 0.12 2.89 2.87 44.96 0.13 3.02 16 13 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 14 C 0.50 16.80 6.46 87.66 0.57 17.36 16 15 O -0.56 -23.80 14.59 15.54 0.23 -23.57 16 16 N -0.71 -24.57 5.42 -463.07 -2.51 -27.08 16 17 C 0.15 6.43 5.61 86.38 0.48 6.92 16 18 C 0.03 1.30 5.09 29.85 0.15 1.45 16 19 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 20 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 21 C 0.01 0.54 5.46 84.65 0.46 1.00 16 22 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 23 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.64 5.51 -2.38 -0.01 1.63 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 1.44 5.51 -2.39 -0.01 1.42 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.13 1.13 7.63 -2.39 -0.02 1.11 16 38 H 0.15 1.05 7.13 -2.39 -0.02 1.03 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.93 7.85 -2.38 -0.02 1.91 16 41 H 0.16 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.41 11.66 8.23 -92.71 -0.76 10.90 16 43 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 46 H 0.01 0.73 8.14 -2.39 -0.02 0.72 16 47 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -75.72 384.20 2.65 -73.07 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.19 Total: 19.30 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.82 Total: 5.44 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -4.46 Total: -96.36 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: 0.38 Total: -42.08 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -1.32 Total: -5.36 kcal Total: -75.72 2.65 -73.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342643566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.955 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds