Wall clock time and date at job start Tue Mar 31 2020 16:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 C 1.52998 * 109.46613 * 119.99287 * 2 1 3 5 5 H 1.09000 * 109.58696 * 305.27777 * 4 2 1 6 6 C 1.53244 * 109.58220 * 184.99874 * 4 2 1 7 7 N 1.46377 * 109.48792 * 182.55204 * 6 4 2 8 8 C 1.34773 * 119.64702 * 245.11457 * 7 6 4 9 9 O 1.21348 * 120.00108 * 349.97198 * 8 7 6 10 10 C 1.49449 * 120.00308 * 169.97920 * 8 7 6 11 11 O 1.21351 * 119.99748 * 352.93526 * 10 8 7 12 12 N 1.34779 * 120.00534 * 172.94660 * 10 8 7 13 13 C 1.46497 * 120.00242 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47032 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46816 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47196 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99578 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00381 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00252 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46850 * 89.99859 * 20 18 16 22 22 H 1.48491 * 109.46917 * 210.00134 * 20 18 16 23 23 H 1.48500 * 109.46644 * 330.00130 * 20 18 16 24 24 C 1.46377 * 120.70341 * 65.09369 * 7 6 4 25 25 C 1.53234 * 109.48790 * 294.90791 * 24 7 6 26 26 S 1.81741 * 109.58082 * 65.69291 * 4 2 1 27 27 H 1.09003 * 109.47113 * 60.00693 * 1 2 3 28 28 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47923 * 300.00680 * 1 2 3 30 30 H 1.08996 * 109.47406 * 239.99883 * 2 1 3 31 31 H 1.09000 * 109.47224 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47169 * 299.99734 * 3 2 1 33 33 H 1.09003 * 109.47556 * 59.99828 * 3 2 1 34 34 H 1.08994 * 109.46821 * 302.56173 * 6 4 2 35 35 H 1.09007 * 109.46399 * 62.55137 * 6 4 2 36 36 H 0.96995 * 119.99612 * 359.97438 * 12 10 8 37 37 H 1.09006 * 109.46882 * 299.99693 * 13 12 10 38 38 H 1.09000 * 109.47192 * 59.99415 * 13 12 10 39 39 H 1.08998 * 109.46921 * 299.99052 * 14 13 12 40 40 H 1.08993 * 109.47132 * 59.99807 * 14 13 12 41 41 H 1.08996 * 109.47300 * 299.99311 * 15 14 13 42 42 H 1.09000 * 109.47332 * 59.99589 * 15 14 13 43 43 H 0.97004 * 120.00395 * 180.02562 * 19 18 16 44 44 H 1.08991 * 109.47055 * 54.91894 * 24 7 6 45 45 H 1.09005 * 109.46217 * 174.90422 * 24 7 6 46 46 H 1.09001 * 109.58481 * 177.45686 * 25 24 7 47 47 H 1.09002 * 109.58447 * 297.86312 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6024 -0.2661 2.1380 6 6 3.5671 -0.6146 1.3165 7 7 4.0577 -1.3565 2.4791 8 6 4.6565 -0.6940 3.4885 9 8 4.9509 0.4757 3.3563 10 6 4.9582 -1.4001 4.7707 11 8 4.5514 -2.5290 4.9519 12 7 5.6819 -0.7832 5.7258 13 6 5.9771 -1.4751 6.9828 14 6 6.8070 -0.5604 7.8858 15 6 7.1158 -1.2834 9.1984 16 6 7.9337 -0.3826 10.0876 17 1 8.2063 0.6064 9.7501 18 6 8.3340 -0.8211 11.3320 19 7 8.0024 -2.0256 11.7427 20 14 9.3484 0.2952 12.4340 21 1 8.4420 1.1065 13.2856 22 1 10.2311 -0.5304 13.2967 23 1 10.1785 1.1968 11.5954 24 6 3.9045 -2.8101 2.5572 25 6 2.4153 -3.1640 2.6298 26 16 1.5783 -2.4771 1.1701 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3635 0.5139 0.8898 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.0008 -1.0337 0.4086 35 1 3.8546 0.4330 1.4064 36 1 6.0072 0.1190 5.5808 37 1 5.0438 -1.7317 7.4841 38 1 6.5391 -2.3853 6.7732 39 1 7.7402 -0.3043 7.3843 40 1 6.2453 0.3499 8.0953 41 1 6.1828 -1.5399 9.7002 42 1 7.6776 -2.1935 8.9884 43 1 8.2837 -2.3340 12.6184 44 1 4.3444 -3.2699 1.6723 45 1 4.4100 -3.1813 3.4487 46 1 2.2974 -4.2475 2.6424 47 1 1.9819 -2.7368 3.5341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343154494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:57 Heat of formation + Delta-G solvation = -76.307015 kcal Electronic energy + Delta-G solvation = -25768.164458 eV Core-core repulsion = 22077.039196 eV Total energy + Delta-G solvation = -3691.125262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14892 -38.93754 -37.61856 -36.46582 -35.41841 -33.40888 -31.33288 -31.29362 -29.96385 -27.65043 -27.32464 -25.35442 -24.16008 -23.35221 -21.86915 -20.91891 -20.65021 -19.87982 -18.07245 -17.44265 -16.79186 -16.47198 -16.16481 -15.92954 -15.43618 -15.20863 -14.96931 -14.61793 -14.49887 -14.45601 -14.10171 -13.92408 -13.82534 -13.30769 -13.09884 -12.75343 -12.44906 -12.35225 -12.19573 -11.96991 -11.90506 -11.84375 -11.61471 -11.43251 -11.18974 -11.02519 -10.93840 -10.82880 -10.63171 -10.14096 -9.96846 -9.66124 -9.39637 -9.26778 -9.16132 -9.06697 -8.41864 -7.97385 -6.06546 -4.09745 1.20380 1.33917 2.11100 2.16916 2.99233 3.27804 3.28475 3.35064 3.38129 4.12233 4.18083 4.25390 4.41028 4.51753 4.57730 4.73434 4.76095 4.87165 5.03374 5.12972 5.17516 5.26007 5.29524 5.32275 5.45516 5.48853 5.50357 5.51502 5.57879 5.60244 5.66677 5.85020 5.89990 5.94587 5.99157 6.25287 6.46257 6.60727 6.68318 6.88528 7.14938 7.53409 7.56681 7.67749 7.88253 7.91717 8.32338 8.96615 9.54870 11.04645 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.002025 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.027435 B =13825.986988 C =14447.167969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.061 4.061 5 H 0.091 0.909 6 C 0.107 3.893 7 N -0.590 5.590 8 C 0.509 3.491 9 O -0.515 6.515 10 C 0.501 3.499 11 O -0.516 6.516 12 N -0.685 5.685 13 C 0.112 3.888 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.523 4.523 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.064 3.936 25 C -0.092 4.092 26 S -0.261 6.261 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.158 0.842 46 H 0.117 0.883 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 1.356 -25.819 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.208 4.208 4 C -0.190 4.190 5 H 0.109 0.891 6 C -0.017 4.017 7 N -0.324 5.324 8 C 0.292 3.708 9 O -0.390 6.390 10 C 0.282 3.718 11 O -0.395 6.395 12 N -0.336 5.336 13 C -0.010 4.010 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.059 4.059 25 C -0.241 4.241 26 S -0.033 6.033 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.174 0.826 46 H 0.135 0.865 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.860 0.499 -26.322 29.752 hybrid contribution 1.265 1.457 1.516 2.454 sum -12.595 1.957 -24.806 27.889 Atomic orbital electron populations 1.21877 0.94059 1.02648 1.02004 1.20920 0.96754 0.95937 0.95675 1.21951 1.01505 0.94892 1.02495 1.23720 0.98018 0.94439 1.02863 0.89084 1.21966 0.91958 0.99462 0.88338 1.47781 1.57406 1.08690 1.18529 1.20382 0.78615 0.86886 0.84891 1.90753 1.50540 1.16329 1.81340 1.20001 0.80212 0.86452 0.85144 1.90452 1.52318 1.18027 1.78666 1.46137 1.50950 1.19712 1.16783 1.21901 1.00741 0.96576 0.81739 1.21936 0.98041 0.98386 0.97757 1.19030 0.97090 0.95732 0.89440 1.21187 1.33489 1.00873 1.00622 0.92573 1.25027 0.96245 0.95145 0.98045 1.69958 1.46153 1.17320 1.19814 0.86567 0.80172 0.80538 0.80570 1.20631 1.21186 1.19864 1.22992 0.96287 0.78674 1.07995 1.23820 0.97574 1.04645 0.98026 1.86832 1.69941 1.07939 1.38560 0.92259 0.91623 0.92478 0.89981 0.91994 0.91870 0.92216 0.89519 0.87230 0.75198 0.90919 0.90858 0.92386 0.92398 0.96195 0.96171 0.92888 0.90301 0.82563 0.86463 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.03 37.16 0.34 -0.63 16 2 C -0.07 -0.48 2.51 -90.62 -0.23 -0.71 16 3 C -0.15 -0.89 8.71 37.15 0.32 -0.56 16 4 C -0.06 -0.50 2.34 -26.61 -0.06 -0.56 16 5 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 6 C 0.11 0.94 4.94 -3.98 -0.02 0.92 16 7 N -0.59 -6.21 2.79 -174.10 -0.49 -6.70 16 8 C 0.51 6.47 7.68 -11.59 -0.09 6.38 16 9 O -0.51 -7.35 15.83 5.50 0.09 -7.26 16 10 C 0.50 6.89 7.71 -11.58 -0.09 6.80 16 11 O -0.52 -7.62 13.15 5.50 0.07 -7.54 16 12 N -0.69 -9.55 5.55 -60.73 -0.34 -9.89 16 13 C 0.11 1.80 5.67 -4.05 -0.02 1.78 16 14 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.06 0.61 5.76 -3.99 -0.02 0.58 16 25 C -0.09 -0.83 6.67 37.28 0.25 -0.58 16 26 S -0.26 -2.37 20.52 -107.50 -2.21 -4.58 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.37 6.41 -51.93 -0.33 0.03 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.02 5.27 -51.92 -0.27 0.75 16 36 H 0.41 5.29 7.96 -40.82 -0.33 4.96 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.16 1.74 4.18 -55.50 -0.23 1.51 16 46 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -30.09 385.14 -9.51 -39.60 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.84 Total: 1.60 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.32 Total: -1.69 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.09 Total: -42.16 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.16 Total: -14.80 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.21 Total: -4.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.09 -9.51 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343154494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.706 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds