Wall clock time and date at job start Tue Mar 31 2020 16:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46916 * 2 1 4 4 C 1.52998 * 109.46613 * 119.99287 * 2 1 3 5 5 H 1.09000 * 109.58696 * 305.27777 * 4 2 1 6 6 C 1.53244 * 109.58220 * 184.99874 * 4 2 1 7 7 N 1.46377 * 109.48792 * 182.55204 * 6 4 2 8 8 C 1.34773 * 119.64702 * 245.11457 * 7 6 4 9 9 O 1.21348 * 120.00108 * 349.97198 * 8 7 6 10 10 C 1.49449 * 120.00308 * 169.97920 * 8 7 6 11 11 O 1.21351 * 119.99748 * 352.93526 * 10 8 7 12 12 N 1.34779 * 120.00534 * 172.94660 * 10 8 7 13 13 C 1.46497 * 120.00242 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47032 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46816 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47196 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99578 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00381 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00252 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46850 * 89.99859 * 20 18 16 22 22 H 1.48491 * 109.46917 * 210.00134 * 20 18 16 23 23 H 1.48500 * 109.46644 * 330.00130 * 20 18 16 24 24 C 1.46377 * 120.70341 * 65.09369 * 7 6 4 25 25 C 1.53234 * 109.48790 * 294.90791 * 24 7 6 26 26 S 1.81741 * 109.58082 * 65.69291 * 4 2 1 27 27 H 1.09003 * 109.47113 * 60.00693 * 1 2 3 28 28 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47923 * 300.00680 * 1 2 3 30 30 H 1.08996 * 109.47406 * 239.99883 * 2 1 3 31 31 H 1.09000 * 109.47224 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47169 * 299.99734 * 3 2 1 33 33 H 1.09003 * 109.47556 * 59.99828 * 3 2 1 34 34 H 1.08994 * 109.46821 * 302.56173 * 6 4 2 35 35 H 1.09007 * 109.46399 * 62.55137 * 6 4 2 36 36 H 0.96995 * 119.99612 * 359.97438 * 12 10 8 37 37 H 1.09006 * 109.46882 * 299.99693 * 13 12 10 38 38 H 1.09000 * 109.47192 * 59.99415 * 13 12 10 39 39 H 1.08998 * 109.46921 * 299.99052 * 14 13 12 40 40 H 1.08993 * 109.47132 * 59.99807 * 14 13 12 41 41 H 1.08996 * 109.47300 * 299.99311 * 15 14 13 42 42 H 1.09000 * 109.47332 * 59.99589 * 15 14 13 43 43 H 0.97004 * 120.00395 * 180.02562 * 19 18 16 44 44 H 1.08991 * 109.47055 * 54.91894 * 24 7 6 45 45 H 1.09005 * 109.46217 * 174.90422 * 24 7 6 46 46 H 1.09001 * 109.58481 * 177.45686 * 25 24 7 47 47 H 1.09002 * 109.58447 * 297.86312 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6024 -0.2661 2.1380 6 6 3.5671 -0.6146 1.3165 7 7 4.0577 -1.3565 2.4791 8 6 4.6565 -0.6940 3.4885 9 8 4.9509 0.4757 3.3563 10 6 4.9582 -1.4001 4.7707 11 8 4.5514 -2.5290 4.9519 12 7 5.6819 -0.7832 5.7258 13 6 5.9771 -1.4751 6.9828 14 6 6.8070 -0.5604 7.8858 15 6 7.1158 -1.2834 9.1984 16 6 7.9337 -0.3826 10.0876 17 1 8.2063 0.6064 9.7501 18 6 8.3340 -0.8211 11.3320 19 7 8.0024 -2.0256 11.7427 20 14 9.3484 0.2952 12.4340 21 1 8.4420 1.1065 13.2856 22 1 10.2311 -0.5304 13.2967 23 1 10.1785 1.1968 11.5954 24 6 3.9045 -2.8101 2.5572 25 6 2.4153 -3.1640 2.6298 26 16 1.5783 -2.4771 1.1701 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3635 0.5139 0.8898 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.0008 -1.0337 0.4086 35 1 3.8546 0.4330 1.4064 36 1 6.0072 0.1190 5.5808 37 1 5.0438 -1.7317 7.4841 38 1 6.5391 -2.3853 6.7732 39 1 7.7402 -0.3043 7.3843 40 1 6.2453 0.3499 8.0953 41 1 6.1828 -1.5399 9.7002 42 1 7.6776 -2.1935 8.9884 43 1 8.2837 -2.3340 12.6184 44 1 4.3444 -3.2699 1.6723 45 1 4.4100 -3.1813 3.4487 46 1 2.2974 -4.2475 2.6424 47 1 1.9819 -2.7368 3.5341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343154494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:56 Heat of formation + Delta-G solvation = -94.066832 kcal Electronic energy + Delta-G solvation = -25768.934582 eV Core-core repulsion = 22077.039196 eV Total energy + Delta-G solvation = -3691.895386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.17035 -39.97999 -38.45369 -37.43312 -36.59366 -35.21446 -33.07674 -32.04250 -30.75285 -28.96241 -28.14351 -26.56440 -25.04485 -24.71958 -22.97735 -22.41220 -21.26919 -21.00537 -19.07200 -18.51724 -18.39143 -17.60156 -17.27587 -16.89133 -16.50743 -16.45242 -16.17964 -15.82279 -15.55861 -15.39674 -15.01011 -14.83934 -14.56488 -14.32697 -14.16060 -13.89586 -13.77344 -13.53384 -13.35963 -13.03118 -12.85644 -12.77047 -12.75749 -12.55794 -12.41785 -12.28835 -11.99858 -11.80252 -11.72549 -11.69794 -11.52022 -11.22616 -10.89509 -10.55218 -10.45639 -10.20556 -10.15659 -8.71352 -8.19983 -6.30650 0.14944 0.62899 1.12814 1.41926 1.42439 1.44823 1.53512 1.93455 2.27886 2.42241 3.13413 3.14035 3.45216 3.61943 3.81790 3.90869 4.01598 4.06210 4.11725 4.17520 4.30214 4.31290 4.47121 4.51451 4.57202 4.63432 4.67107 4.79086 4.80685 4.90883 4.95796 4.97277 4.98655 5.06240 5.14541 5.19618 5.31805 5.38020 5.39309 5.51400 5.70469 5.72245 5.84164 6.06883 6.23164 6.52103 6.79200 6.86357 7.38696 8.91717 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.002025 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.027435 B =13825.986988 C =14447.167969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.147 4.147 4 C -0.054 4.054 5 H 0.076 0.924 6 C 0.106 3.894 7 N -0.584 5.584 8 C 0.513 3.487 9 O -0.533 6.533 10 C 0.502 3.498 11 O -0.527 6.527 12 N -0.682 5.682 13 C 0.128 3.872 14 C -0.107 4.107 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.063 0.937 18 C -0.002 4.002 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.262 1.262 24 C 0.065 3.935 25 C -0.089 4.089 26 S -0.266 6.266 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.419 0.581 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.065 0.935 41 H -0.004 1.004 42 H -0.002 1.002 43 H 0.263 0.737 44 H 0.098 0.902 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 2.417 -27.422 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.206 4.206 4 C -0.184 4.184 5 H 0.095 0.905 6 C -0.017 4.017 7 N -0.316 5.316 8 C 0.295 3.705 9 O -0.409 6.409 10 C 0.283 3.717 11 O -0.406 6.406 12 N -0.333 5.333 13 C 0.005 3.995 14 C -0.145 4.145 15 C -0.013 4.013 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.572 5.572 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.058 4.058 25 C -0.238 4.238 26 S -0.037 6.037 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.161 0.839 46 H 0.150 0.850 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.818 1.562 -27.961 31.228 hybrid contribution 1.184 1.073 1.957 2.526 sum -12.634 2.634 -26.004 29.030 Atomic orbital electron populations 1.21855 0.93939 1.02137 1.02437 1.20923 0.96781 0.96200 0.94896 1.21936 1.01538 0.94333 1.02786 1.23719 0.97521 0.93956 1.03221 0.90518 1.22123 0.92278 0.99236 0.88068 1.47877 1.56284 1.09191 1.18288 1.20103 0.79012 0.86567 0.84815 1.90748 1.51714 1.16875 1.81595 1.20225 0.79720 0.86278 0.85472 1.90476 1.52552 1.18533 1.79050 1.45935 1.51340 1.19957 1.16108 1.21509 0.99862 0.95886 0.82269 1.21643 0.99094 0.98285 0.95449 1.18930 0.95252 0.95163 0.91917 1.21675 1.33524 1.01507 1.01283 0.91838 1.25971 0.97547 0.96625 0.99823 1.70090 1.47542 1.19219 1.20384 0.85458 0.78562 0.78577 0.78517 1.19921 1.20969 1.18665 1.22982 0.96574 0.78043 1.08169 1.23784 0.97021 1.05525 0.97442 1.86873 1.70134 1.08497 1.38195 0.90961 0.92557 0.92944 0.89310 0.91905 0.90593 0.92925 0.87825 0.87500 0.74383 0.91608 0.91209 0.91428 0.91620 0.98548 0.98382 0.92800 0.88420 0.83931 0.85037 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.03 71.98 0.65 -1.04 16 2 C -0.07 -0.78 2.51 -10.80 -0.03 -0.81 16 3 C -0.15 -1.49 8.71 71.98 0.63 -0.86 16 4 C -0.05 -0.83 2.34 30.68 0.07 -0.76 16 5 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 6 C 0.11 1.70 4.94 86.48 0.43 2.12 16 7 N -0.58 -11.58 2.79 -823.10 -2.30 -13.88 16 8 C 0.51 12.58 7.68 87.27 0.67 13.25 16 9 O -0.53 -14.70 15.83 -3.24 -0.05 -14.75 16 10 C 0.50 13.52 7.71 87.27 0.67 14.19 16 11 O -0.53 -15.40 13.15 -3.25 -0.04 -15.44 16 12 N -0.68 -18.54 5.55 -464.41 -2.58 -21.12 16 13 C 0.13 4.08 5.67 86.38 0.49 4.57 16 14 C -0.11 -3.95 5.27 30.59 0.16 -3.79 16 15 C 0.03 1.25 4.97 29.85 0.15 1.40 16 16 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 20 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 C 0.07 1.16 5.76 86.48 0.50 1.66 16 25 C -0.09 -1.52 6.67 72.06 0.48 -1.04 16 26 S -0.27 -4.47 20.52 -56.49 -1.16 -5.63 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.76 7.18 -2.39 -0.02 0.75 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.63 6.41 -2.39 -0.02 0.62 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.84 5.27 -2.38 -0.01 1.82 16 36 H 0.42 10.31 7.96 -92.71 -0.74 9.57 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.14 3.06 4.18 -58.91 -0.25 2.82 16 46 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -64.12 385.14 1.74 -62.38 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.01 Total: 18.76 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.57 Total: -0.26 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -4.59 Total: -90.52 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.09 Total: -30.19 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -1.16 Total: -5.63 kcal Total: -64.12 1.74 -62.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343154494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.691 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds