Wall clock time and date at job start Tue Mar 31 2020 15:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47073 * 2 1 4 4 C 1.53003 * 109.46680 * 174.93857 * 3 2 1 5 5 C 1.52997 * 109.47588 * 293.96326 * 4 3 2 6 6 C 1.50699 * 109.47261 * 294.93679 * 3 2 1 7 7 C 1.41235 * 126.70480 * 275.24058 * 6 3 2 8 8 C 1.36877 * 103.84402 * 180.11689 * 7 6 3 9 9 C 1.47429 * 126.94990 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00004 * 359.71249 * 9 8 7 11 11 N 1.34780 * 120.00064 * 179.71025 * 9 8 7 12 12 C 1.38947 * 119.99753 * 185.56876 * 11 9 8 13 13 C 1.38697 * 120.29147 * 20.67640 * 12 11 9 14 14 C 1.38189 * 120.03236 * 180.29392 * 13 12 11 15 15 C 1.38891 * 120.62103 * 359.44625 * 14 13 12 16 16 C 1.36445 * 120.58930 * 0.55419 * 15 14 13 17 17 C 1.40751 * 119.94333 * 359.72656 * 16 15 14 18 18 C 1.41037 * 120.30310 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99739 * 208.37038 * 18 17 16 20 20 C 1.39973 * 120.00033 * 28.37184 * 18 17 16 21 21 N 1.30845 * 119.99963 * 12.23553 * 20 18 17 22 22 Si 1.86808 * 120.00237 * 192.23444 * 20 18 17 23 23 H 1.48499 * 109.46804 * 59.99933 * 22 20 18 24 24 H 1.48495 * 109.46948 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46702 * 300.00135 * 22 20 18 26 26 O 1.34658 * 106.10386 * 359.66862 * 8 7 6 27 27 N 1.20888 * 111.45901 * 0.22402 * 26 8 7 28 28 H 1.09003 * 109.47056 * 65.58971 * 1 2 3 29 29 H 1.09001 * 109.47046 * 185.59081 * 1 2 3 30 30 H 1.08995 * 109.47009 * 305.59039 * 1 2 3 31 31 H 1.08999 * 109.47089 * 239.99917 * 2 1 3 32 32 H 1.08998 * 109.47036 * 120.00444 * 2 1 3 33 33 H 1.09002 * 109.47026 * 54.94356 * 3 2 1 34 34 H 1.08999 * 109.47356 * 53.97254 * 4 3 2 35 35 H 1.09004 * 109.46804 * 173.96723 * 4 3 2 36 36 H 1.08995 * 109.47374 * 185.76081 * 5 4 3 37 37 H 1.09001 * 109.47099 * 305.76069 * 5 4 3 38 38 H 1.09000 * 109.46966 * 65.75717 * 5 4 3 39 39 H 1.08000 * 128.07414 * 0.03256 * 7 6 3 40 40 H 0.96997 * 120.00246 * 5.57205 * 11 9 8 41 41 H 1.08005 * 119.98935 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.69334 * 179.69907 * 14 13 12 43 43 H 1.08007 * 119.70826 * 180.30497 * 15 14 13 44 44 H 1.08004 * 120.03008 * 179.74527 * 16 15 14 45 45 H 0.97007 * 119.99598 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1273 5 6 3.9627 0.8980 1.4999 6 6 1.6427 2.1158 -1.2883 7 6 2.3379 2.0651 -2.5167 8 6 1.5758 2.8317 -3.3563 9 6 1.8416 3.1223 -4.7770 10 8 2.8305 2.6645 -5.3165 11 7 0.9885 3.8954 -5.4778 12 6 1.1751 4.0749 -6.8429 13 6 1.9325 3.1691 -7.5706 14 6 2.1197 3.3561 -8.9269 15 6 1.5457 4.4408 -9.5773 16 6 0.7959 5.3475 -8.8863 17 6 0.5944 5.1837 -7.5030 18 6 -0.1798 6.1160 -6.7814 19 1 0.0164 6.2841 -5.7327 20 6 -1.2023 6.8234 -7.4243 21 7 -1.6013 6.4582 -8.6157 22 14 -1.9973 8.2886 -6.5813 23 1 -0.9658 9.3206 -6.3054 24 1 -3.0445 8.8601 -7.4656 25 1 -2.6132 7.8501 -5.3031 26 8 0.5305 3.2613 -2.6241 27 7 0.5894 2.8537 -1.4875 28 1 -0.3633 0.4247 -0.9358 29 1 -0.3633 -1.0228 0.1001 30 1 -0.3633 0.5981 0.8357 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6046 1.9818 0.8412 34 1 3.9952 0.8161 -0.6526 35 1 3.9371 2.4631 0.0198 36 1 5.0405 0.9941 1.6307 37 1 3.4504 1.4634 2.2784 38 1 3.6805 -0.1526 1.5685 39 1 3.2571 1.5442 -2.7407 40 1 0.2443 4.3264 -5.0292 41 1 2.3799 2.3194 -7.0762 42 1 2.7145 2.6500 -9.4873 43 1 1.6976 4.5700 -10.6388 44 1 0.3572 6.1899 -9.4004 45 1 -2.3097 6.9487 -9.0614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344334425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:09 Heat of formation + Delta-G solvation = 29.536654 kcal Electronic energy + Delta-G solvation = -27257.494036 eV Core-core repulsion = 23435.514548 eV Total energy + Delta-G solvation = -3821.979488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.92201 -39.70954 -37.76766 -37.27035 -34.09909 -33.73785 -33.19479 -32.18579 -31.69583 -29.70410 -28.52868 -27.29009 -25.44458 -24.04446 -23.33453 -22.99283 -21.57954 -20.93752 -20.44198 -19.28251 -18.10320 -17.67402 -17.32720 -16.46996 -15.97412 -15.41807 -15.16612 -14.96355 -14.67496 -14.40156 -14.23901 -14.04171 -13.68073 -13.58690 -13.06007 -12.78065 -12.70507 -12.36506 -12.30178 -12.01705 -11.82407 -11.66355 -11.63460 -11.47385 -11.22596 -11.20653 -11.07528 -10.94942 -10.85681 -10.56903 -10.33236 -10.05353 -9.84177 -9.61687 -9.55216 -9.31626 -9.00856 -7.46127 -7.05331 -6.75108 -4.47145 0.93056 2.06443 2.63360 2.80568 2.90089 3.01716 3.04343 3.17271 3.54724 3.66917 3.85075 3.87306 4.37227 4.56937 4.62238 4.77856 4.82792 4.96065 5.05950 5.12517 5.15917 5.26678 5.40802 5.46014 5.48930 5.57939 5.63520 5.66005 5.77351 5.82909 5.92595 5.93597 6.05529 6.09895 6.28654 6.42513 6.53206 6.74415 6.94943 7.05928 7.17161 7.53777 7.60927 7.80203 7.99529 8.02968 8.12861 8.30997 8.44562 8.61372 8.72935 8.86465 10.09377 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.003025 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.899656 B = 9254.841723 C =10519.504231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.008 4.008 4 C -0.119 4.119 5 C -0.152 4.152 6 C 0.020 3.980 7 C -0.162 4.162 8 C -0.063 4.063 9 C 0.576 3.424 10 O -0.513 6.513 11 N -0.609 5.609 12 C 0.008 3.992 13 C -0.099 4.099 14 C -0.222 4.222 15 C -0.113 4.113 16 C -0.145 4.145 17 C 0.105 3.895 18 C -0.469 4.469 19 H 0.077 0.923 20 C 0.078 3.922 21 N -0.792 5.792 22 Si 0.910 3.090 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.264 1.264 26 O 0.114 5.886 27 N -0.348 5.348 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.179 0.821 40 H 0.412 0.588 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.123 0.877 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -8.028 14.932 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.028 4.028 4 C -0.157 4.157 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.184 4.184 8 C -0.130 4.130 9 C 0.360 3.640 10 O -0.392 6.392 11 N -0.249 5.249 12 C -0.086 4.086 13 C -0.118 4.118 14 C -0.242 4.242 15 C -0.132 4.132 16 C -0.165 4.165 17 C 0.101 3.899 18 C -0.498 4.498 19 H 0.095 0.905 20 C -0.140 4.140 21 N -0.418 5.418 22 Si 0.734 3.266 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.188 1.188 26 O 0.042 5.958 27 N -0.049 5.049 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.196 0.804 40 H 0.249 0.751 41 H 0.142 0.858 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.141 0.859 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.794 -7.894 15.158 17.507 hybrid contribution -0.220 0.624 0.133 0.675 sum 3.574 -7.270 15.291 17.304 Atomic orbital electron populations 1.21787 0.95454 1.01522 1.02309 1.21620 0.96383 0.94690 1.02765 1.19700 0.96318 0.95487 0.91251 1.21579 0.93511 1.02221 0.98373 1.21806 1.01383 1.01226 0.96500 1.23490 0.92678 0.99824 0.97842 1.22702 1.02744 1.02015 0.90977 1.24524 0.90937 1.01856 0.95645 1.16560 0.83855 0.81795 0.81755 1.90764 1.27677 1.53376 1.67338 1.42803 1.28014 1.45534 1.08546 1.17757 1.11096 0.98608 0.81126 1.20959 0.99004 0.98119 0.93749 1.20345 1.08202 1.01433 0.94210 1.20520 0.98802 0.96052 0.97817 1.20927 1.00855 1.00423 0.94291 1.17347 0.91025 0.88939 0.92607 1.19312 1.13663 1.19379 0.97466 0.90535 1.25861 0.96091 0.97401 0.94689 1.69788 1.23134 1.35755 1.13092 0.86331 0.79067 0.81199 0.80004 1.18811 1.20254 1.18823 1.85010 1.39537 1.55698 1.15527 1.73727 1.20439 1.13317 0.97453 0.92732 0.92622 0.92575 0.91434 0.90668 0.89314 0.91113 0.91391 0.92393 0.92597 0.92322 0.80362 0.75139 0.85842 0.89006 0.89234 0.85912 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.63 37.16 0.36 -1.08 16 2 C -0.12 -0.97 5.27 -26.73 -0.14 -1.12 16 3 C -0.01 -0.08 2.32 -91.77 -0.21 -0.29 16 4 C -0.12 -0.94 4.91 -26.73 -0.13 -1.07 16 5 C -0.15 -0.95 9.55 37.16 0.35 -0.60 16 6 C 0.02 0.25 5.33 -82.17 -0.44 -0.19 16 7 C -0.16 -2.20 10.18 -38.94 -0.40 -2.60 16 8 C -0.06 -1.02 7.29 -36.33 -0.26 -1.28 16 9 C 0.58 11.02 7.65 -12.52 -0.10 10.93 16 10 O -0.51 -10.90 13.85 5.28 0.07 -10.83 16 11 N -0.61 -12.50 5.15 -10.46 -0.05 -12.55 16 12 C 0.01 0.19 6.52 -83.22 -0.54 -0.35 16 13 C -0.10 -2.31 8.76 -39.43 -0.35 -2.66 16 14 C -0.22 -5.04 10.04 -39.36 -0.39 -5.44 16 15 C -0.11 -2.61 9.96 -39.99 -0.40 -3.01 16 16 C -0.15 -3.64 8.61 -39.28 -0.34 -3.97 16 17 C 0.10 2.64 5.56 -106.64 -0.59 2.05 16 18 C -0.47 -11.49 8.34 -37.87 -0.32 -11.81 16 19 H 0.08 1.77 7.13 -52.49 -0.37 1.39 16 20 C 0.08 1.84 5.23 -17.32 -0.09 1.75 16 21 N -0.79 -19.43 10.89 55.55 0.61 -18.82 16 22 Si 0.91 17.80 29.58 -169.99 -5.03 12.77 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 O 0.11 1.80 11.05 15.50 0.17 1.97 16 27 N -0.35 -5.16 11.82 33.52 0.40 -4.77 16 28 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.33 6.77 -51.93 -0.35 -0.02 16 39 H 0.18 2.11 7.85 -52.49 -0.41 1.70 16 40 H 0.41 7.86 7.26 -40.82 -0.30 7.56 16 41 H 0.12 2.84 5.48 -52.48 -0.29 2.56 16 42 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 43 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.12 3.14 6.24 -52.48 -0.33 2.82 16 45 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -27.35 372.65 -8.32 -35.67 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.12 Total: 11.67 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -3.99 Total: -20.73 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.95 Total: -36.14 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.24 Total: -8.86 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.35 -8.32 -35.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344334425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.205 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds