Wall clock time and date at job start Tue Mar 31 2020 15:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47073 * 2 1 4 4 C 1.53003 * 109.46680 * 174.93857 * 3 2 1 5 5 C 1.52997 * 109.47588 * 293.96326 * 4 3 2 6 6 C 1.50699 * 109.47261 * 294.93679 * 3 2 1 7 7 C 1.41235 * 126.70480 * 275.24058 * 6 3 2 8 8 C 1.36877 * 103.84402 * 180.11689 * 7 6 3 9 9 C 1.47429 * 126.94990 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00004 * 359.71249 * 9 8 7 11 11 N 1.34780 * 120.00064 * 179.71025 * 9 8 7 12 12 C 1.38947 * 119.99753 * 185.56876 * 11 9 8 13 13 C 1.38697 * 120.29147 * 20.67640 * 12 11 9 14 14 C 1.38189 * 120.03236 * 180.29392 * 13 12 11 15 15 C 1.38891 * 120.62103 * 359.44625 * 14 13 12 16 16 C 1.36445 * 120.58930 * 0.55419 * 15 14 13 17 17 C 1.40751 * 119.94333 * 359.72656 * 16 15 14 18 18 C 1.41037 * 120.30310 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99739 * 208.37038 * 18 17 16 20 20 C 1.39973 * 120.00033 * 28.37184 * 18 17 16 21 21 N 1.30845 * 119.99963 * 12.23553 * 20 18 17 22 22 Si 1.86808 * 120.00237 * 192.23444 * 20 18 17 23 23 H 1.48499 * 109.46804 * 59.99933 * 22 20 18 24 24 H 1.48495 * 109.46948 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46702 * 300.00135 * 22 20 18 26 26 O 1.34658 * 106.10386 * 359.66862 * 8 7 6 27 27 N 1.20888 * 111.45901 * 0.22402 * 26 8 7 28 28 H 1.09003 * 109.47056 * 65.58971 * 1 2 3 29 29 H 1.09001 * 109.47046 * 185.59081 * 1 2 3 30 30 H 1.08995 * 109.47009 * 305.59039 * 1 2 3 31 31 H 1.08999 * 109.47089 * 239.99917 * 2 1 3 32 32 H 1.08998 * 109.47036 * 120.00444 * 2 1 3 33 33 H 1.09002 * 109.47026 * 54.94356 * 3 2 1 34 34 H 1.08999 * 109.47356 * 53.97254 * 4 3 2 35 35 H 1.09004 * 109.46804 * 173.96723 * 4 3 2 36 36 H 1.08995 * 109.47374 * 185.76081 * 5 4 3 37 37 H 1.09001 * 109.47099 * 305.76069 * 5 4 3 38 38 H 1.09000 * 109.46966 * 65.75717 * 5 4 3 39 39 H 1.08000 * 128.07414 * 0.03256 * 7 6 3 40 40 H 0.96997 * 120.00246 * 5.57205 * 11 9 8 41 41 H 1.08005 * 119.98935 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.69334 * 179.69907 * 14 13 12 43 43 H 1.08007 * 119.70826 * 180.30497 * 15 14 13 44 44 H 1.08004 * 120.03008 * 179.74527 * 16 15 14 45 45 H 0.97007 * 119.99598 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1273 5 6 3.9627 0.8980 1.4999 6 6 1.6427 2.1158 -1.2883 7 6 2.3379 2.0651 -2.5167 8 6 1.5758 2.8317 -3.3563 9 6 1.8416 3.1223 -4.7770 10 8 2.8305 2.6645 -5.3165 11 7 0.9885 3.8954 -5.4778 12 6 1.1751 4.0749 -6.8429 13 6 1.9325 3.1691 -7.5706 14 6 2.1197 3.3561 -8.9269 15 6 1.5457 4.4408 -9.5773 16 6 0.7959 5.3475 -8.8863 17 6 0.5944 5.1837 -7.5030 18 6 -0.1798 6.1160 -6.7814 19 1 0.0164 6.2841 -5.7327 20 6 -1.2023 6.8234 -7.4243 21 7 -1.6013 6.4582 -8.6157 22 14 -1.9973 8.2886 -6.5813 23 1 -0.9658 9.3206 -6.3054 24 1 -3.0445 8.8601 -7.4656 25 1 -2.6132 7.8501 -5.3031 26 8 0.5305 3.2613 -2.6241 27 7 0.5894 2.8537 -1.4875 28 1 -0.3633 0.4247 -0.9358 29 1 -0.3633 -1.0228 0.1001 30 1 -0.3633 0.5981 0.8357 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6046 1.9818 0.8412 34 1 3.9952 0.8161 -0.6526 35 1 3.9371 2.4631 0.0198 36 1 5.0405 0.9941 1.6307 37 1 3.4504 1.4634 2.2784 38 1 3.6805 -0.1526 1.5685 39 1 3.2571 1.5442 -2.7407 40 1 0.2443 4.3264 -5.0292 41 1 2.3799 2.3194 -7.0762 42 1 2.7145 2.6500 -9.4873 43 1 1.6976 4.5700 -10.6388 44 1 0.3572 6.1899 -9.4004 45 1 -2.3097 6.9487 -9.0614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344334425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:08 Heat of formation + Delta-G solvation = 16.920573 kcal Electronic energy + Delta-G solvation = -27258.041110 eV Core-core repulsion = 23435.514548 eV Total energy + Delta-G solvation = -3822.526562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.07996 -41.35971 -39.03216 -38.54837 -35.74222 -35.54230 -34.25973 -33.20718 -32.56990 -31.53998 -30.26724 -28.02565 -27.24072 -25.46664 -24.39816 -23.73427 -23.27508 -22.32854 -21.67251 -20.60297 -19.50706 -19.09463 -18.83671 -18.09408 -17.30426 -16.98307 -16.35023 -16.19295 -15.90345 -15.61105 -15.56038 -15.01299 -14.83231 -14.75049 -14.50879 -14.41663 -14.07853 -13.62492 -13.47720 -13.22784 -12.92587 -12.91929 -12.78430 -12.70925 -12.63695 -12.29519 -12.16802 -12.08911 -11.94871 -11.62839 -11.60412 -11.55666 -11.31051 -11.08278 -11.02997 -10.83420 -10.71852 -9.33420 -8.85364 -8.53520 -6.34017 -0.37710 0.84320 1.01430 1.10326 1.41454 1.51222 1.52770 1.54807 1.97457 2.20817 2.24807 2.76822 2.91131 3.38330 3.71001 3.78495 3.85019 3.94745 4.04687 4.12870 4.34720 4.36872 4.53645 4.54373 4.60542 4.61704 4.73624 4.75552 4.82813 4.86296 4.97829 5.02512 5.06679 5.15283 5.20260 5.22933 5.25289 5.29151 5.37447 5.40434 5.49742 5.73578 5.78133 6.02553 6.17073 6.20492 6.50812 6.64358 6.87010 6.90865 6.98364 7.09812 8.33817 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.003025 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.899656 B = 9254.841723 C =10519.504231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.008 4.008 4 C -0.117 4.117 5 C -0.149 4.149 6 C 0.033 3.967 7 C -0.142 4.142 8 C -0.084 4.084 9 C 0.585 3.415 10 O -0.535 6.535 11 N -0.614 5.614 12 C 0.004 3.996 13 C -0.113 4.113 14 C -0.223 4.223 15 C -0.117 4.117 16 C -0.168 4.168 17 C 0.076 3.924 18 C -0.492 4.492 19 H 0.081 0.919 20 C 0.040 3.960 21 N -0.823 5.823 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.258 1.258 26 O 0.098 5.902 27 N -0.360 5.360 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.199 0.801 40 H 0.416 0.584 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 -8.954 17.000 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.027 4.027 4 C -0.155 4.155 5 C -0.206 4.206 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.149 4.149 9 C 0.371 3.629 10 O -0.414 6.414 11 N -0.255 5.255 12 C -0.091 4.091 13 C -0.133 4.133 14 C -0.242 4.242 15 C -0.136 4.136 16 C -0.188 4.188 17 C 0.072 3.928 18 C -0.522 4.522 19 H 0.099 0.901 20 C -0.176 4.176 21 N -0.449 5.449 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.182 1.182 26 O 0.029 5.971 27 N -0.064 5.064 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.216 0.784 40 H 0.253 0.747 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.460 -8.826 17.218 19.856 hybrid contribution -0.363 0.788 -0.424 0.965 sum 4.097 -8.038 16.795 19.065 Atomic orbital electron populations 1.21799 0.96367 1.02116 1.00881 1.21639 0.95478 0.93927 1.04013 1.19918 0.97573 0.95877 0.89377 1.21585 0.92049 1.02084 0.99789 1.21793 1.01810 1.01770 0.95276 1.24052 0.91318 0.98437 0.98761 1.23052 1.02579 1.00170 0.90572 1.24022 0.92430 1.03944 0.94546 1.16770 0.82967 0.80408 0.82742 1.90732 1.28373 1.53892 1.68427 1.42785 1.28701 1.46305 1.07692 1.17909 1.10473 0.98143 0.82562 1.21164 0.99383 0.98375 0.94351 1.20683 1.07809 1.01581 0.94166 1.20775 0.98109 0.95639 0.99070 1.20963 1.02157 1.00986 0.94698 1.17674 0.92014 0.89925 0.93183 1.19544 1.14431 1.20304 0.97897 0.90081 1.26654 0.96206 0.99527 0.95186 1.69848 1.23776 1.36893 1.14356 0.85290 0.78094 0.77570 0.79080 1.18753 1.19470 1.18182 1.85008 1.39709 1.56470 1.15908 1.73736 1.21469 1.14145 0.97007 0.95406 0.91385 0.92413 0.91486 0.88086 0.88991 0.90553 0.92199 0.91823 0.92395 0.91249 0.78359 0.74656 0.85475 0.86312 0.86778 0.87199 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.63 71.98 0.69 -1.92 16 2 C -0.11 -1.57 5.27 30.60 0.16 -1.41 16 3 C -0.01 -0.13 2.32 -11.54 -0.03 -0.16 16 4 C -0.12 -1.53 4.91 30.59 0.15 -1.38 16 5 C -0.15 -1.40 9.55 71.98 0.69 -0.71 16 6 C 0.03 0.78 5.33 43.55 0.23 1.02 16 7 C -0.14 -3.65 10.18 22.69 0.23 -3.42 16 8 C -0.08 -2.67 7.29 24.37 0.18 -2.49 16 9 C 0.59 22.60 7.65 86.66 0.66 23.26 16 10 O -0.53 -22.72 13.85 -4.02 -0.06 -22.78 16 11 N -0.61 -25.84 5.15 -305.25 -1.57 -27.42 16 12 C 0.00 0.18 6.52 38.93 0.25 0.43 16 13 C -0.11 -5.34 8.76 22.37 0.20 -5.14 16 14 C -0.22 -10.01 10.04 22.41 0.22 -9.79 16 15 C -0.12 -5.43 9.96 22.01 0.22 -5.21 16 16 C -0.17 -8.65 8.61 22.47 0.19 -8.46 16 17 C 0.08 3.95 5.56 -21.17 -0.12 3.83 16 18 C -0.49 -24.79 8.34 23.38 0.19 -24.60 16 19 H 0.08 3.85 7.13 -2.91 -0.02 3.83 16 20 C 0.04 1.90 5.23 85.26 0.45 2.35 16 21 N -0.82 -41.23 10.89 21.83 0.24 -40.99 16 22 Si 0.98 36.66 29.58 68.60 2.03 38.69 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 26 O 0.10 3.10 11.05 65.66 0.73 3.83 16 27 N -0.36 -10.45 11.82 -48.83 -0.58 -11.02 16 28 H 0.03 0.61 7.38 -2.39 -0.02 0.59 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.94 6.51 -2.39 -0.02 0.92 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 0.92 7.82 -2.39 -0.02 0.90 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.51 6.77 -2.39 -0.02 0.49 16 39 H 0.20 4.23 7.85 -2.91 -0.02 4.21 16 40 H 0.42 16.46 7.26 -92.71 -0.67 15.78 16 41 H 0.13 5.87 5.48 -2.91 -0.02 5.85 16 42 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 43 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.11 5.85 6.24 -2.91 -0.02 5.83 16 45 H 0.29 13.18 8.30 -92.70 -0.77 12.41 16 Total: -1.00 -59.69 372.65 5.72 -53.97 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.35 Total: 39.50 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.58 Total: -33.79 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -1.91 Total: -79.43 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.67 Total: -18.95 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -59.69 5.72 -53.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344334425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.891 kcal (2) G-P(sol) polarization free energy of solvation -59.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds