Wall clock time and date at job start Tue Mar 31 2020 15:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 C 1.52992 * 109.47295 * 239.99709 * 2 1 3 5 5 C 1.50701 * 109.47154 * 60.00093 * 4 2 1 6 6 H 1.07999 * 120.00063 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99977 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99620 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46534 * 90.00684 * 9 7 5 11 11 H 1.48499 * 109.46900 * 209.99946 * 9 7 5 12 12 H 1.48492 * 109.47466 * 330.00381 * 9 7 5 13 13 C 1.53006 * 109.47214 * 119.99502 * 2 1 3 14 14 N 1.46505 * 109.47199 * 300.00254 * 13 2 1 15 15 C 1.34777 * 119.99567 * 179.97438 * 14 13 2 16 16 O 1.21581 * 120.00076 * 0.02562 * 15 14 13 17 17 C 1.47556 * 119.99443 * 179.97438 * 15 14 13 18 18 C 1.38915 * 120.29905 * 0.02562 * 17 15 14 19 19 C 1.40557 * 118.06525 * 180.25623 * 18 17 15 20 20 C 1.40547 * 121.12623 * 180.31756 * 19 18 17 21 21 C 1.36146 * 119.63600 * 179.67646 * 20 19 18 22 22 C 1.39328 * 120.83651 * 359.67811 * 21 20 19 23 23 C 1.36144 * 121.07185 * 0.04775 * 22 21 20 24 24 C 1.40527 * 119.82931 * 359.97156 * 23 22 21 25 25 N 1.33811 * 120.73958 * 180.02562 * 24 23 22 26 26 C 1.31387 * 121.66041 * 179.97438 * 25 24 23 27 27 O 1.35412 * 119.31999 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.47243 * 300.00347 * 1 2 3 29 29 H 1.08995 * 109.46970 * 60.00026 * 1 2 3 30 30 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47288 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47146 * 299.99770 * 3 2 1 33 33 H 1.09006 * 109.47356 * 59.99722 * 3 2 1 34 34 H 1.09004 * 109.47375 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47444 * 299.99974 * 4 2 1 36 36 H 0.97010 * 119.99903 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47102 * 179.97438 * 13 2 1 38 38 H 1.08997 * 109.46782 * 60.00016 * 13 2 1 39 39 H 0.97003 * 119.99721 * 359.97438 * 14 13 2 40 40 H 1.08002 * 120.96324 * 359.97340 * 18 17 15 41 41 H 1.07998 * 120.18175 * 359.40315 * 20 19 18 42 42 H 1.08006 * 119.58097 * 179.69893 * 21 20 19 43 43 H 1.07998 * 119.46418 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.08178 * 179.97438 * 23 22 21 45 45 H 0.96696 * 114.00408 * 269.98043 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2480 0.3985 -5.2572 10 1 2.2255 1.4408 -5.6612 11 1 1.0838 -0.5808 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8769 -0.4912 3.6696 16 8 2.5759 -1.4797 3.7811 17 6 1.3854 0.2048 4.8743 18 6 0.5868 1.3350 4.7540 19 6 0.1494 1.9641 5.9323 20 6 -0.6664 3.1077 5.8856 21 6 -1.0780 3.6889 7.0459 22 6 -0.7063 3.1606 8.2804 23 6 0.0782 2.0510 8.3623 24 6 0.5242 1.4219 7.1875 25 7 1.2955 0.3301 7.2469 26 6 1.7222 -0.2727 6.1602 27 8 2.5011 -1.3744 6.2754 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2491 36 1 2.8617 -1.8824 -4.7335 37 1 3.1300 -0.7216 1.2491 38 1 1.6767 -1.7488 1.2494 39 1 0.9942 0.7584 2.3564 40 1 0.3138 1.7217 3.7832 41 1 -0.9614 3.5256 4.9345 42 1 -1.7008 4.5705 7.0089 43 1 -1.0458 3.6393 9.1870 44 1 0.3571 1.6553 9.3278 45 1 3.4487 -1.1844 6.3089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345889893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:40 Heat of formation + Delta-G solvation = -33.435058 kcal Electronic energy + Delta-G solvation = -27191.588991 eV Core-core repulsion = 23366.878845 eV Total energy + Delta-G solvation = -3824.710146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40049 -39.62099 -38.37506 -37.02337 -36.09573 -34.20452 -33.42793 -32.12792 -30.70525 -30.08862 -27.19882 -26.58517 -26.44173 -24.93708 -23.95555 -22.92935 -22.43306 -20.85606 -19.32006 -18.88099 -18.30053 -17.49332 -16.72660 -16.36439 -16.02028 -15.66581 -15.28097 -14.94854 -14.74122 -14.62912 -14.45659 -14.02402 -13.75139 -13.62168 -13.60483 -13.11718 -12.80296 -12.30223 -12.24915 -12.09922 -12.06342 -11.75157 -11.66700 -11.23490 -11.06678 -10.91973 -10.89365 -10.69055 -10.46809 -10.30733 -10.25344 -9.93875 -9.66354 -9.21967 -9.10304 -8.97073 -8.79523 -8.65448 -8.39289 -6.03180 -4.04763 -0.17926 0.22823 1.46349 2.20424 3.12042 3.12646 3.28296 3.33557 3.35796 3.37251 3.71656 4.10853 4.14552 4.29651 4.38320 4.42134 4.68829 4.75969 4.87815 4.97105 5.26416 5.27530 5.32273 5.41110 5.50971 5.55698 5.58736 5.67299 5.87729 5.95751 6.00466 6.08152 6.14316 6.21704 6.31936 6.35655 6.45657 6.56135 6.66877 6.98971 7.01283 7.06069 7.29049 7.53244 7.59300 7.61779 7.71808 7.95007 8.26546 8.36848 8.99873 9.58546 11.08195 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002522 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.914967 B =11100.468118 C =12308.466386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.129 3.871 14 N -0.716 5.716 15 C 0.554 3.446 16 O -0.519 6.519 17 C -0.195 4.195 18 C -0.005 4.005 19 C -0.122 4.122 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.103 4.103 24 C 0.167 3.833 25 N -0.502 5.502 26 C 0.395 3.605 27 O -0.459 6.459 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.395 0.605 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 11.734 22.784 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.339 3.661 16 O -0.396 6.396 17 C -0.202 4.202 18 C -0.031 4.031 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.143 4.143 22 C -0.107 4.107 23 C -0.122 4.122 24 C 0.045 3.955 25 N -0.222 5.222 26 C 0.200 3.800 27 O -0.266 6.266 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.231 0.769 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -5.866 10.259 23.533 26.334 hybrid contribution -0.348 1.248 -1.793 2.211 sum -6.214 11.506 21.741 25.370 Atomic orbital electron populations 1.21771 0.95254 1.01303 1.00158 1.20919 0.95486 0.95860 0.95056 1.21772 1.00655 0.95866 1.00160 1.19093 0.96408 0.95275 0.89387 1.21163 1.31268 1.12108 0.90491 0.92269 1.25015 0.95314 0.95059 0.99101 1.69961 1.36892 1.22940 1.23487 0.86648 0.79164 0.79415 0.83075 1.20772 1.21323 1.19958 1.21694 0.99090 0.96147 0.82458 1.46132 1.53098 1.31845 1.05726 1.17788 0.81247 0.84329 0.82756 1.90822 1.37271 1.25080 1.86417 1.21278 1.04826 0.98715 0.95347 1.22007 0.90862 0.91579 0.98637 1.18780 1.01718 0.98483 0.93460 1.21081 0.95651 0.93776 0.99503 1.20955 1.00570 1.00542 0.92216 1.21001 0.96157 0.95205 0.98342 1.20833 0.98218 0.95826 0.97290 1.18673 0.93471 0.90628 0.92707 1.67565 1.13929 1.08717 1.31945 1.19188 0.90336 0.84480 0.85973 1.84715 1.21622 1.25283 1.95003 0.95460 0.91296 0.93224 0.93244 0.91311 0.95454 0.96273 0.96250 0.93000 0.91477 0.91464 0.76875 0.83350 0.84671 0.85152 0.84994 0.84411 0.73249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.26 7.65 -34.44 -0.26 -13.53 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.13 2.18 4.56 -4.04 -0.02 2.16 16 14 N -0.72 -9.99 4.91 -61.34 -0.30 -10.29 16 15 C 0.55 8.31 7.77 -12.46 -0.10 8.22 16 16 O -0.52 -9.53 15.14 -16.68 -0.25 -9.78 16 17 C -0.19 -2.47 5.90 -104.71 -0.62 -3.08 16 18 C 0.00 -0.05 9.38 -38.46 -0.36 -0.41 16 19 C -0.12 -1.19 5.74 -106.80 -0.61 -1.80 16 20 C -0.08 -0.58 9.77 -39.46 -0.39 -0.96 16 21 C -0.12 -0.75 9.96 -39.93 -0.40 -1.14 16 22 C -0.09 -0.54 9.94 -39.93 -0.40 -0.94 16 23 C -0.10 -0.88 9.97 -39.47 -0.39 -1.27 16 24 C 0.17 1.85 6.61 -84.79 -0.56 1.29 16 25 N -0.50 -6.51 10.33 -10.76 -0.11 -6.63 16 26 C 0.39 5.29 7.74 -16.60 -0.13 5.16 16 27 O -0.46 -6.15 11.59 -39.90 -0.46 -6.61 16 28 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 33 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.40 4.51 4.23 -40.82 -0.17 4.34 16 40 H 0.15 1.05 6.47 -52.49 -0.34 0.72 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.41 3.72 9.06 45.56 0.41 4.13 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -33.34 369.02 -8.94 -42.28 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.16 Total: 4.09 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.93 Total: -9.15 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.32 Total: -42.22 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.72 Total: -16.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.34 -8.94 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345889893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.841 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds