Wall clock time and date at job start Tue Mar 31 2020 15:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 C 1.52992 * 109.47295 * 239.99709 * 2 1 3 5 5 C 1.50701 * 109.47154 * 60.00093 * 4 2 1 6 6 H 1.07999 * 120.00063 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99977 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99620 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46534 * 90.00684 * 9 7 5 11 11 H 1.48499 * 109.46900 * 209.99946 * 9 7 5 12 12 H 1.48492 * 109.47466 * 330.00381 * 9 7 5 13 13 C 1.53006 * 109.47214 * 119.99502 * 2 1 3 14 14 N 1.46505 * 109.47199 * 300.00254 * 13 2 1 15 15 C 1.34777 * 119.99567 * 179.97438 * 14 13 2 16 16 O 1.21581 * 120.00076 * 0.02562 * 15 14 13 17 17 C 1.47556 * 119.99443 * 179.97438 * 15 14 13 18 18 C 1.38915 * 120.29905 * 0.02562 * 17 15 14 19 19 C 1.40557 * 118.06525 * 180.25623 * 18 17 15 20 20 C 1.40547 * 121.12623 * 180.31756 * 19 18 17 21 21 C 1.36146 * 119.63600 * 179.67646 * 20 19 18 22 22 C 1.39328 * 120.83651 * 359.67811 * 21 20 19 23 23 C 1.36144 * 121.07185 * 0.04775 * 22 21 20 24 24 C 1.40527 * 119.82931 * 359.97156 * 23 22 21 25 25 N 1.33811 * 120.73958 * 180.02562 * 24 23 22 26 26 C 1.31387 * 121.66041 * 179.97438 * 25 24 23 27 27 O 1.35412 * 119.31999 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.47243 * 300.00347 * 1 2 3 29 29 H 1.08995 * 109.46970 * 60.00026 * 1 2 3 30 30 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47288 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47146 * 299.99770 * 3 2 1 33 33 H 1.09006 * 109.47356 * 59.99722 * 3 2 1 34 34 H 1.09004 * 109.47375 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47444 * 299.99974 * 4 2 1 36 36 H 0.97010 * 119.99903 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47102 * 179.97438 * 13 2 1 38 38 H 1.08997 * 109.46782 * 60.00016 * 13 2 1 39 39 H 0.97003 * 119.99721 * 359.97438 * 14 13 2 40 40 H 1.08002 * 120.96324 * 359.97340 * 18 17 15 41 41 H 1.07998 * 120.18175 * 359.40315 * 20 19 18 42 42 H 1.08006 * 119.58097 * 179.69893 * 21 20 19 43 43 H 1.07998 * 119.46418 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.08178 * 179.97438 * 23 22 21 45 45 H 0.96696 * 114.00408 * 269.98043 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2480 0.3985 -5.2572 10 1 2.2255 1.4408 -5.6612 11 1 1.0838 -0.5808 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8769 -0.4912 3.6696 16 8 2.5759 -1.4797 3.7811 17 6 1.3854 0.2048 4.8743 18 6 0.5868 1.3350 4.7540 19 6 0.1494 1.9641 5.9323 20 6 -0.6664 3.1077 5.8856 21 6 -1.0780 3.6889 7.0459 22 6 -0.7063 3.1606 8.2804 23 6 0.0782 2.0510 8.3623 24 6 0.5242 1.4219 7.1875 25 7 1.2955 0.3301 7.2469 26 6 1.7222 -0.2727 6.1602 27 8 2.5011 -1.3744 6.2754 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2491 36 1 2.8617 -1.8824 -4.7335 37 1 3.1300 -0.7216 1.2491 38 1 1.6767 -1.7488 1.2494 39 1 0.9942 0.7584 2.3564 40 1 0.3138 1.7217 3.7832 41 1 -0.9614 3.5256 4.9345 42 1 -1.7008 4.5705 7.0089 43 1 -1.0458 3.6393 9.1870 44 1 0.3571 1.6553 9.3278 45 1 3.4487 -1.1844 6.3089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345889893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:39 Heat of formation + Delta-G solvation = -56.811669 kcal Electronic energy + Delta-G solvation = -27192.602677 eV Core-core repulsion = 23366.878845 eV Total energy + Delta-G solvation = -3825.723832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21214 -40.71461 -39.31295 -38.43254 -36.86899 -35.38988 -34.70321 -33.78023 -31.49697 -30.74349 -29.08488 -27.94452 -27.74089 -25.86075 -25.02569 -24.38551 -23.11608 -22.00062 -20.27157 -20.06527 -19.19736 -18.60184 -18.31100 -17.62069 -16.97287 -16.62220 -16.47874 -16.32700 -15.87113 -15.56327 -15.33399 -15.08497 -14.96989 -14.74914 -14.50757 -14.38251 -14.19057 -13.92056 -13.77686 -12.99556 -12.86749 -12.71874 -12.64025 -12.57869 -12.43428 -12.39675 -12.32218 -12.21695 -11.97125 -11.69656 -11.52649 -11.35304 -11.00106 -10.86474 -10.51196 -10.50022 -10.17375 -9.74765 -9.28441 -8.12592 -6.20290 -0.88598 -0.52337 0.81149 1.42945 1.43851 1.44337 1.54452 2.00482 2.14871 2.45647 2.51659 2.98706 3.22212 3.34580 3.45960 3.54349 3.74302 3.95044 4.05879 4.09126 4.19971 4.23059 4.31199 4.34382 4.55375 4.62083 4.69838 4.72588 4.78670 4.91087 4.97198 5.04666 5.10237 5.14329 5.29498 5.34996 5.37045 5.45955 5.48384 5.52762 5.54950 5.58556 5.82155 5.84163 5.91479 6.30979 6.43068 6.52395 6.75657 6.95224 7.14016 7.47559 8.99917 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002522 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.914967 B =11100.468118 C =12308.466386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.258 1.258 13 C 0.142 3.858 14 N -0.701 5.701 15 C 0.558 3.442 16 O -0.562 6.562 17 C -0.220 4.220 18 C 0.018 3.982 19 C -0.135 4.135 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.068 4.068 23 C -0.128 4.128 24 C 0.143 3.857 25 N -0.525 5.525 26 C 0.375 3.625 27 O -0.480 6.480 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.072 0.928 34 H -0.014 1.014 35 H -0.015 1.015 36 H 0.259 0.741 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.411 0.589 40 H 0.182 0.818 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.139 0.861 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 16.129 23.789 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.182 1.182 13 C 0.018 3.982 14 N -0.354 5.354 15 C 0.345 3.655 16 O -0.442 6.442 17 C -0.226 4.226 18 C -0.008 4.008 19 C -0.137 4.137 20 C -0.099 4.099 21 C -0.137 4.137 22 C -0.088 4.088 23 C -0.147 4.147 24 C 0.022 3.978 25 N -0.245 5.245 26 C 0.181 3.819 27 O -0.289 6.289 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.005 0.995 35 H 0.003 0.997 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.250 0.750 40 H 0.199 0.801 41 H 0.184 0.816 42 H 0.183 0.817 43 H 0.182 0.818 44 H 0.157 0.843 45 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -8.890 14.706 24.557 29.972 hybrid contribution 0.506 0.000 -1.926 1.991 sum -8.385 14.706 22.631 28.262 Atomic orbital electron populations 1.21719 0.93511 1.01020 1.01825 1.20709 0.96759 0.96437 0.92524 1.21717 1.00022 0.94412 1.01858 1.18986 0.94351 0.94217 0.92386 1.21593 1.30310 1.12065 0.90940 0.90693 1.25961 0.95743 0.95862 1.02780 1.70126 1.38896 1.25005 1.24035 0.85546 0.79244 0.78071 0.78784 1.20176 1.21828 1.18168 1.21276 0.98075 0.95398 0.83420 1.45812 1.53150 1.32044 1.04440 1.18126 0.80279 0.83716 0.83411 1.90797 1.39258 1.27121 1.87016 1.20945 1.07619 1.00537 0.93547 1.22354 0.88481 0.89677 1.00277 1.19012 1.02475 0.99599 0.92636 1.21471 0.94412 0.92458 1.01524 1.21440 0.99771 1.01033 0.91473 1.21453 0.93683 0.93521 1.00132 1.21019 0.99781 0.97178 0.96721 1.19167 0.93666 0.90450 0.94511 1.67537 1.15032 1.09907 1.32009 1.19335 0.91030 0.84862 0.86668 1.84663 1.22692 1.26401 1.95158 0.90987 0.92301 0.94590 0.94388 0.92320 0.90919 0.99522 0.99665 0.93252 0.93107 0.93514 0.74972 0.80054 0.81582 0.81680 0.81829 0.84290 0.72092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 2 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 3 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.68 7.65 25.60 0.20 -26.48 16 6 H 0.08 3.61 5.68 -2.91 -0.02 3.60 16 7 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 8 N -0.94 -56.71 13.29 21.45 0.28 -56.43 16 9 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 13 C 0.14 4.91 4.56 86.38 0.39 5.31 16 14 N -0.70 -18.64 4.91 -466.24 -2.29 -20.93 16 15 C 0.56 16.81 7.77 86.70 0.67 17.48 16 16 O -0.56 -21.67 15.14 17.03 0.26 -21.41 16 17 C -0.22 -5.46 5.90 -19.92 -0.12 -5.58 16 18 C 0.02 0.30 9.38 23.00 0.22 0.52 16 19 C -0.14 -2.23 5.74 -21.28 -0.12 -2.35 16 20 C -0.08 -0.73 9.77 22.35 0.22 -0.52 16 21 C -0.12 -0.78 9.96 22.05 0.22 -0.56 16 22 C -0.07 -0.57 9.94 22.04 0.22 -0.35 16 23 C -0.13 -1.94 9.97 22.34 0.22 -1.72 16 24 C 0.14 3.02 6.61 40.27 0.27 3.28 16 25 N -0.52 -13.94 10.33 -301.41 -3.11 -17.05 16 26 C 0.38 10.45 7.74 85.50 0.66 11.11 16 27 O -0.48 -13.93 11.59 -66.05 -0.77 -14.69 16 28 H 0.07 1.61 6.86 -2.38 -0.02 1.60 16 29 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.06 1.95 6.62 -2.38 -0.02 1.93 16 33 H 0.07 1.58 6.86 -2.38 -0.02 1.56 16 34 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 35 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.41 7.87 4.23 -92.71 -0.39 7.48 16 40 H 0.18 1.65 6.47 -2.91 -0.02 1.63 16 41 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 42 H 0.17 0.01 8.06 -2.91 -0.02 -0.01 16 43 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.42 8.76 9.06 -74.06 -0.67 8.09 16 Total: -1.00 -78.14 369.02 1.14 -77.00 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.02 Total: 15.28 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.76 Total: -6.60 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -5.12 Total: -94.41 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.51 Total: -36.11 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -78.14 1.14 -77.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345889893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.188 kcal (2) G-P(sol) polarization free energy of solvation -78.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds